Experiment ID: 710

Field Description
namea quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
doihttps://doi.org/10.1038/s41467-020-16224-6
sraprjna575097
mapmd5a8529cc86fa78ca87dbeb78570d6af66
datamd5d0517eabd64c1970834fc8c8a5fe442e

Annotations for experiment:

term enrichment score
TermScore
swiss webster0.484848
ketogenic diet0.285714
LOWER IN ketogenic diet0.153846
control diet0.142857
LOWER IN small intestine0.142857
contaminant0.142857
small intestine0.142857
mouse chow0.133333
LOWER IN stomach0.111111
LOWER IN control diet0.100000
LOWER IN mouse chow0.086957
state of california0.083333
stomach0.080000
LOWER IN feces0.071429
mouse0.035635
mus musculus0.031683
research facility0.015610
united states of america0.008811
feces0.007220
Fraction of dbbact annotations with this term covered by the query
TermScore
swiss webster0.333333
ketogenic diet0.250000
LOWER IN ketogenic diet0.250000
LOWER IN small intestine0.200000
contaminant0.200000
small intestine0.200000
LOWER IN stomach0.111111
control diet0.090909
LOWER IN control diet0.090909
mouse chow0.083333
LOWER IN mouse chow0.071429
stomach0.062500
LOWER IN feces0.052632
state of california0.043478
mouse0.018182
mus musculus0.016129
research facility0.007874
united states of america0.004425
feces0.003650
Fraction of annotations for the query sequences containing the term
TermScore
state of california1.000000
united states of america1.000000
swiss webster0.888889
research facility0.888889
mus musculus0.888889
mouse0.888889
feces0.333333
mouse chow0.333333
control diet0.333333
ketogenic diet0.333333
LOWER IN small intestine0.111111
LOWER IN stomach0.111111
LOWER IN control diet0.111111
LOWER IN mouse chow0.111111
LOWER IN ketogenic diet0.111111
contaminant0.111111
contamination0.111111
LOWER IN feces0.111111
small intestine0.111111
stomach0.111111
Exp. ID User ID Description Date Region Flag Sequences
710amnon high in small intestine stomach compared to feces in state of california swiss webster research facility united states of america mus musculus mouse 2028-05-20v4No1 / -3
710amnondominant mouse chow, control diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 6
710amnondominant ketogenic diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 9
710amnonsuspected contaminant (common in blanks) (contamination)2028-05-20v4No1 / 21
710amnon high in control diet mouse chow compared to ketogenic diet in state of california united states of america swiss webster research facility feces mus musculus mouse 2028-05-20v4No1 / 42
710amnon high in ketogenic diet compared to control diet mouse chow in state of california united states of america swiss webster research facility feces mus musculus mouse 2028-05-20v4No1 / 100
710amnoncommon ketogenic diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 134
710amnoncommon mouse chow, control diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 144
710amnon high in feces compared to small intestine stomach in state of california swiss webster research facility united states of america mus musculus mouse 2028-05-20v4No1 / 322

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