Experiment ID: 710

Field Description
namea quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
doihttps://doi.org/10.1038/s41467-020-16224-6
sraprjna575097
mapmd5a8529cc86fa78ca87dbeb78570d6af66
datamd5d0517eabd64c1970834fc8c8a5fe442e

Annotations for experiment:

term enrichment score
TermScore
swiss webster0.484848
ketogenic diet0.250000
LOWER IN ketogenic diet0.142857
contaminant0.142857
LOWER IN small intestine0.133333
small intestine0.133333
control diet0.117647
mouse chow0.111111
LOWER IN control diet0.086957
LOWER IN mouse chow0.083333
LOWER IN stomach0.076923
stomach0.076923
state of california0.074074
mouse0.034409
mus musculus0.031189
research facility0.013502
united states of america0.008065
feces0.006309
LOWER IN feces0.006192
Fraction of dbbact annotations with this term covered by the query
TermScore
swiss webster0.333333
ketogenic diet0.200000
LOWER IN ketogenic diet0.200000
contaminant0.200000
LOWER IN small intestine0.166667
small intestine0.166667
control diet0.071429
LOWER IN control diet0.071429
mouse chow0.066667
LOWER IN mouse chow0.066667
LOWER IN stomach0.058824
stomach0.058824
state of california0.038462
mouse0.017544
mus musculus0.015873
research facility0.006803
united states of america0.004049
feces0.003185
LOWER IN feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
state of california1.000000
research facility0.888889
mus musculus0.888889
mouse0.888889
swiss webster0.888889
feces0.333333
mouse chow0.333333
control diet0.333333
ketogenic diet0.333333
LOWER IN stomach0.111111
LOWER IN small intestine0.111111
LOWER IN mouse chow0.111111
LOWER IN control diet0.111111
LOWER IN ketogenic diet0.111111
contaminant0.111111
contamination0.111111
stomach0.111111
small intestine0.111111
LOWER IN feces0.111111
Exp. ID User ID Description Date Region Flag Sequences
710amnon high in stomach small intestine compared to feces in united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v4No1 / 4
710amnondominant united states of america, research facility, mus musculus, state of california, mouse, mouse chow, swiss webster, control diet2028-05-20v4No1 / 13
710amnondominant united states of america, research facility, mus musculus, state of california, mouse, ketogenic diet, swiss webster2028-05-20v4No1 / 16
710amnonsuspected contaminant (common in blanks) (contamination)2028-05-20v4No1 / 28
710amnon high in mouse chow control diet compared to ketogenic diet in feces united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v4No1 / 49
710amnon high in ketogenic diet compared to mouse chow control diet in feces united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v4No1 / 107
710amnoncommon united states of america, research facility, mus musculus, state of california, mouse, ketogenic diet, swiss webster2028-05-20v4No1 / 141
710amnoncommon united states of america, research facility, mus musculus, state of california, mouse, mouse chow, swiss webster, control diet2028-05-20v4No1 / 151
710amnon high in feces compared to stomach small intestine in united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v4No1 / 329

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