Experiment ID: 710

Field Description
namea quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
doihttps://doi.org/10.1038/s41467-020-16224-6
sraprjna575097
mapmd5a8529cc86fa78ca87dbeb78570d6af66
datamd5d0517eabd64c1970834fc8c8a5fe442e

Annotations for experiment:

term enrichment score
TermScore
swiss webster0.484848
ketogenic diet0.250000
LOWER IN ketogenic diet0.142857
contaminant0.142857
LOWER IN small intestine0.133333
mouse chow0.133333
small intestine0.133333
control diet0.117647
LOWER IN stomach0.111111
LOWER IN control diet0.086957
LOWER IN mouse chow0.086957
stomach0.080000
state of california0.080000
LOWER IN feces0.066667
mouse0.035635
mus musculus0.031683
research facility0.013877
united states of america0.008264
feces0.006536
Fraction of dbbact annotations with this term covered by the query
TermScore
swiss webster0.333333
ketogenic diet0.200000
LOWER IN ketogenic diet0.200000
contaminant0.200000
LOWER IN small intestine0.166667
small intestine0.166667
LOWER IN stomach0.111111
mouse chow0.083333
control diet0.071429
LOWER IN control diet0.071429
LOWER IN mouse chow0.071429
stomach0.062500
LOWER IN feces0.047619
state of california0.041667
mouse0.018182
mus musculus0.016129
research facility0.006993
united states of america0.004149
feces0.003300
Fraction of annotations for the query sequences containing the term
TermScore
state of california1.000000
united states of america1.000000
swiss webster0.888889
research facility0.888889
mus musculus0.888889
mouse0.888889
feces0.333333
mouse chow0.333333
control diet0.333333
ketogenic diet0.333333
LOWER IN small intestine0.111111
LOWER IN stomach0.111111
LOWER IN control diet0.111111
LOWER IN mouse chow0.111111
LOWER IN ketogenic diet0.111111
contaminant0.111111
contamination0.111111
LOWER IN feces0.111111
small intestine0.111111
stomach0.111111
Exp. ID User ID Description Date Region Flag Sequences
710amnon high in small intestine stomach compared to feces in state of california swiss webster research facility united states of america mus musculus mouse 2028-05-20v4No1 / 4
710amnondominant mouse chow, control diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 13
710amnondominant ketogenic diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 16
710amnonsuspected contaminant (common in blanks) (contamination)2028-05-20v4No1 / 28
710amnon high in control diet mouse chow compared to ketogenic diet in state of california united states of america swiss webster research facility feces mus musculus mouse 2028-05-20v4No1 / 49
710amnon high in ketogenic diet compared to control diet mouse chow in state of california united states of america swiss webster research facility feces mus musculus mouse 2028-05-20v4No1 / 107
710amnoncommon ketogenic diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 141
710amnoncommon mouse chow, control diet, state of california, swiss webster, research facility, united states of america, mus musculus, mouse2028-05-20v4No1 / 151
710amnon high in feces compared to small intestine stomach in state of california swiss webster research facility united states of america mus musculus mouse 2028-05-20v4No1 / 329

Problems / suggestions? Please email info AT dbbact DOT org