dbBact

×

Experiment ID: 715

Field	Description
name	signatures within the esophageal microbiome are associated with host genetics, age, and disease
sra	prjeb25236
doi	https://doi.org/10.1186/s40168-018-0611-4
mapmd5	b11ca8c81bce31e4f7f7f8f4fab3d337
datamd5	e7a2a6fdcab854266429b030c2c22ea9

Annotations for experiment:

term enrichment score

Term	Score
oesophageal brush	0.615385
esophagus	0.380952
LOWER IN age 60-79 years	0.285714
age 30-40 years	0.285714
LOWER IN age 30-40 years	0.285714
LOWER IN age 20-30 years	0.285714
age 60-79 years	0.285714
age 20-30 years	0.250000
contaminant	0.200000
australia	0.090909
adult	0.013962
homo sapiens	0.008466

Fraction of dbbact annotations with this term covered by the query

Term	Score
oesophageal brush	0.500000
LOWER IN age 60-79 years	0.500000
age 30-40 years	0.500000
LOWER IN age 30-40 years	0.500000
LOWER IN age 20-30 years	0.500000
age 60-79 years	0.500000
age 20-30 years	0.333333
esophagus	0.250000
contaminant	0.200000
australia	0.047619
adult	0.007042
homo sapiens	0.004255

Fraction of annotations for the query sequences containing the term

Term	Score
australia	1.000000
oesophageal brush	0.800000
esophagus	0.800000
adult	0.800000
homo sapiens	0.800000
LOWER IN age 60-79 years	0.200000
age 30-40 years	0.200000
age 20-30 years	0.200000
contaminant	0.200000
contamination	0.200000
LOWER IN age 30-40 years	0.200000
LOWER IN age 20-30 years	0.200000
age 60-79 years	0.200000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
715	amnon	higher in blank compared to esophagus samples (contamination)	2028-05-22	v4	No	1 / -3
715	amnon	high in age 60-79 years compared to age 30-40 years age 20-30 years in oesophageal brush esophagus australia adult homo sapiens	2028-05-22	v4	No	1 / -3
715	amnon	dominant oesophageal brush, esophagus, australia, adult, homo sapiens	2028-05-22	v4	No	1 / 11
715	amnon	high in age 30-40 years age 20-30 years compared to age 60-79 years in oesophageal brush esophagus australia adult homo sapiens	2028-05-22	v4	No	1 / 15
715	amnon	common oesophageal brush, esophagus, australia, adult, homo sapiens	2028-05-22	v4	No	1 / 85

Problems / suggestions? Please email info AT dbbact DOT org