dbBact

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Experiment ID: 715

Field	Description
name	signatures within the esophageal microbiome are associated with host genetics, age, and disease
sra	prjeb25236
doi	https://doi.org/10.1186/s40168-018-0611-4
mapmd5	b11ca8c81bce31e4f7f7f8f4fab3d337
datamd5	e7a2a6fdcab854266429b030c2c22ea9

Annotations for experiment:

term enrichment score

Term	Score
oesophageal brush	0.615385
esophagus	0.380952
LOWER IN third decade human stage	0.250000
LOWER IN 65-79 year-old human stage	0.222222
65-79 year-old human stage	0.222222
LOWER IN fourth decade human stage	0.200000
contaminant	0.200000
third decade human stage	0.181818
fourth decade human stage	0.153846
australia	0.064516
adult	0.009650
homo sapiens	0.006168

Fraction of dbbact annotations with this term covered by the query

Term	Score
oesophageal brush	0.500000
LOWER IN third decade human stage	0.333333
esophagus	0.250000
LOWER IN 65-79 year-old human stage	0.250000
65-79 year-old human stage	0.250000
LOWER IN fourth decade human stage	0.200000
contaminant	0.200000
third decade human stage	0.166667
fourth decade human stage	0.125000
australia	0.033333
adult	0.004854
homo sapiens	0.003096

Fraction of annotations for the query sequences containing the term

Term	Score
australia	1.000000
oesophageal brush	0.800000
esophagus	0.800000
adult	0.800000
homo sapiens	0.800000
third decade human stage	0.200000
LOWER IN 65-79 year-old human stage	0.200000
fourth decade human stage	0.200000
LOWER IN third decade human stage	0.200000
65-79 year-old human stage	0.200000
LOWER IN fourth decade human stage	0.200000
contaminant	0.200000
contamination	0.200000

Number of experiments associating the term to the sequence

Term	Score
oesophageal brush	1.000000
esophagus	1.000000
australia	1.000000
adult	1.000000
homo sapiens	1.000000
third decade human stage	1.000000
LOWER IN 65-79 year-old human stage	1.000000
fourth decade human stage	1.000000
LOWER IN third decade human stage	1.000000
65-79 year-old human stage	1.000000
LOWER IN fourth decade human stage	1.000000
contaminant	1.000000
contamination	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
715	amnon	high in 65-79 year-old human stage compared to third decade human stage fourth decade human stage in oesophageal brush esophagus australia adult homo sapiens	2028-05-22	v4	1 / 4	approved	No
715	amnon	higher in blank compared to esophagus samples (contamination)	2028-05-22	v4	1 / 4	approved	No
715	amnon	dominant oesophageal brush, esophagus, australia, adult, homo sapiens	2028-05-22	v4	1 / 18	approved	No
715	amnon	high in third decade human stage fourth decade human stage compared to 65-79 year-old human stage in oesophageal brush esophagus australia adult homo sapiens	2028-05-22	v4	1 / 22	approved	No
715	amnon	common oesophageal brush, esophagus, australia, adult, homo sapiens	2028-05-22	v4	1 / 92	approved	No

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