Experiment ID: 722

Field Description
name16s rrna amplicon sequencing of urban prokaryotic communities in the south bronx river estuary
doihttps://doi.org/10.1128/mra.00182-20
sraprjna606795
mapmd5b4531c48c050b3be43ae01c165158eb8
datamd5e4827c69b0a3b57eb9c7bd47f04b9ecc

Annotations for experiment:

term enrichment score
TermScore
sediment surface0.583333
estuary0.500000
hunts point0.375000
oyster reef0.375000
soundview0.375000
state of new york0.333333
new york city0.285714
LOWER IN soundview0.166667
LOWER IN oyster reef0.166667
LOWER IN hunts point0.166667
LOWER IN sediment surface0.166667
surface water0.139535
LOWER IN surface water0.133333
LOWER IN marine sediment0.125000
LOWER IN sediment0.117647
marine sediment0.114754
LOWER IN sea water0.100000
sediment0.075676
sea water0.053571
united states of america0.008811
Fraction of dbbact annotations with this term covered by the query
TermScore
sediment surface0.500000
hunts point0.500000
oyster reef0.500000
soundview0.500000
LOWER IN soundview0.500000
LOWER IN oyster reef0.500000
LOWER IN hunts point0.500000
LOWER IN sediment surface0.500000
estuary0.333333
state of new york0.200000
LOWER IN surface water0.200000
new york city0.166667
LOWER IN marine sediment0.166667
LOWER IN sediment0.142857
LOWER IN sea water0.100000
surface water0.090909
marine sediment0.062500
sediment0.040000
sea water0.029412
united states of america0.004425
Fraction of annotations for the query sequences containing the term
TermScore
estuary1.000000
united states of america1.000000
state of new york1.000000
new york city1.000000
sediment0.700000
marine sediment0.700000
sediment surface0.700000
hunts point0.300000
oyster reef0.300000
soundview0.300000
surface water0.300000
sea water0.300000
LOWER IN sea water0.100000
LOWER IN surface water0.100000
LOWER IN soundview0.100000
LOWER IN oyster reef0.100000
LOWER IN hunts point0.100000
LOWER IN sediment surface0.100000
LOWER IN marine sediment0.100000
LOWER IN sediment0.100000
Exp. ID User ID Description Date Region Flag Sequences
722amnondominant estuary, marine sediment, sediment, united states of america, state of new york, new york city, sediment surface, hunts point2021-01-02v4No1 / 8
722amnondominant estuary, marine sediment, sediment, united states of america, state of new york, new york city, sediment surface, oyster reef, soundview2021-01-02v4No1 / 8
722amnondominant estuary, united states of america, state of new york, new york city, sea water, surface water2021-01-02v4No1 / 20
722amnoncommon estuary, united states of america, state of new york, new york city, sea water, surface water2021-01-02v4No1 / 301
722amnon high in surface water sea water compared to sediment surface marine sediment sediment in estuary new york city state of new york united states of america 2021-01-02v4No1 / 399
722amnon high in soundview oyster reef compared to hunts point in estuary marine sediment sediment united states of america state of new york new york city sediment surface 2021-01-02v4No1 / 469
722amnon high in hunts point compared to soundview oyster reef in estuary marine sediment sediment united states of america state of new york new york city sediment surface 2021-01-02v4No1 / 696
722amnoncommon estuary, marine sediment, sediment, united states of america, state of new york, new york city, sediment surface, oyster reef, soundview2021-01-02v4No1 / 922
722amnoncommon estuary, marine sediment, sediment, united states of america, state of new york, new york city, sediment surface, hunts point2021-01-02v4No1 / 1001
722amnon high in sediment marine sediment sediment surface compared to sea water surface water in estuary united states of america state of new york new york city 2021-01-02v4No1 / 1736

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