Experiment ID: 722

Field Description
name16s rrna amplicon sequencing of urban prokaryotic communities in the south bronx river estuary
doihttps://doi.org/10.1128/mra.00182-20
sraprjna606795
mapmd5b4531c48c050b3be43ae01c165158eb8
datamd5e4827c69b0a3b57eb9c7bd47f04b9ecc

Annotations for experiment:

term enrichment score
TermScore
sediment surface0.583333
estuary0.400000
hunts point0.375000
soundview0.375000
oyster reef0.375000
new york city0.250000
LOWER IN soundview0.166667
LOWER IN oyster reef0.166667
LOWER IN hunts point0.166667
LOWER IN sediment surface0.166667
state of new york0.153846
surface water0.130435
marine sediment0.108527
LOWER IN surface water0.090909
LOWER IN marine sediment0.074074
sediment0.059829
sea water0.052174
LOWER IN sediment0.047619
LOWER IN sea water0.044444
united states of america0.008065
Fraction of dbbact annotations with this term covered by the query
TermScore
sediment surface0.500000
hunts point0.500000
soundview0.500000
oyster reef0.500000
LOWER IN soundview0.500000
LOWER IN oyster reef0.500000
LOWER IN hunts point0.500000
LOWER IN sediment surface0.500000
estuary0.250000
new york city0.142857
LOWER IN surface water0.083333
state of new york0.083333
surface water0.083333
marine sediment0.058824
LOWER IN marine sediment0.058824
sediment0.031250
LOWER IN sediment0.031250
LOWER IN sea water0.028571
sea water0.028571
united states of america0.004049
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
estuary1.000000
state of new york1.000000
new york city1.000000
sediment0.700000
marine sediment0.700000
sediment surface0.700000
hunts point0.300000
soundview0.300000
oyster reef0.300000
surface water0.300000
sea water0.300000
LOWER IN surface water0.100000
LOWER IN sea water0.100000
LOWER IN soundview0.100000
LOWER IN oyster reef0.100000
LOWER IN hunts point0.100000
LOWER IN sediment0.100000
LOWER IN marine sediment0.100000
LOWER IN sediment surface0.100000
Exp. ID User ID Description Date Region Flag Sequences
722amnondominant united states of america, estuary, sediment, marine sediment, state of new york, new york city, sediment surface, soundview, oyster reef2021-01-02v4No1 / 8
722amnondominant united states of america, estuary, sediment, marine sediment, state of new york, new york city, sediment surface, hunts point2021-01-02v4No1 / 8
722amnondominant united states of america, estuary, surface water, sea water, state of new york, new york city2021-01-02v4No1 / 20
722amnoncommon united states of america, estuary, surface water, sea water, state of new york, new york city2021-01-02v4No1 / 301
722amnon high in surface water sea water compared to sediment marine sediment sediment surface in united states of america estuary state of new york new york city 2021-01-02v4No1 / 399
722amnon high in soundview oyster reef compared to hunts point in united states of america estuary sediment marine sediment state of new york new york city sediment surface 2021-01-02v4No1 / 469
722amnon high in hunts point compared to soundview oyster reef in united states of america estuary sediment marine sediment state of new york new york city sediment surface 2021-01-02v4No1 / 696
722amnoncommon united states of america, estuary, sediment, marine sediment, state of new york, new york city, sediment surface, soundview, oyster reef2021-01-02v4No1 / 922
722amnoncommon united states of america, estuary, sediment, marine sediment, state of new york, new york city, sediment surface, hunts point2021-01-02v4No1 / 1001
722amnon high in sediment marine sediment sediment surface compared to surface water sea water in united states of america estuary state of new york new york city 2021-01-02v4No1 / 1736

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