dbBact

Experiment ID: 728

Field	Description
name	fecal microbiota of toxigenic clostridioides difficile-associated diarrhea
sra	prjna493204
doi	https://doi.org/10.3389/fmicb.2018.03331
datamd5	84d6e77b48dd54064d4bbb34783eba38
mapmd5	68d4ea7eb15c7b9209045b15e37379b6

Annotations for experiment:

term enrichment score

Term	Score
valladolid	0.571429
clostridium difficile	0.333333
clostridium difficile infection	0.307692
clostridium difficile intestinal infectious disease	0.266667
hospital	0.173913
pathogen	0.111111
kingdom of spain	0.075472
adult	0.008602
homo sapiens	0.005502
feces	0.004734

Fraction of dbbact annotations with this term covered by the query

Term	Score
valladolid	0.500000
clostridium difficile	0.333333
clostridium difficile infection	0.200000
clostridium difficile intestinal infectious disease	0.166667
hospital	0.100000
pathogen	0.066667
kingdom of spain	0.040000
adult	0.004329
homo sapiens	0.002762
feces	0.002375

Fraction of annotations for the query sequences containing the term

Term	Score
feces	0.666667
homo sapiens	0.666667
hospital	0.666667
adult	0.666667
kingdom of spain	0.666667
clostridium difficile intestinal infectious disease	0.666667
clostridium difficile infection	0.666667
valladolid	0.666667
pathogen	0.333333
clostridium difficile	0.333333

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
hospital	1.000000
adult	1.000000
kingdom of spain	1.000000
clostridium difficile intestinal infectious disease	1.000000
clostridium difficile infection	1.000000
valladolid	1.000000
pathogen	1.000000
clostridium difficile	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
728	amnon	clostridium difficile pathogen (other pathogen, clostridium difficile)	2021-01-05	v3	1 / 1	approved	No
728	amnon	common feces, homo sapiens, hospital, adult, kingdom of spain, clostridium difficile intestinal infectious disease, clostridium difficile infection, valladolid	2021-01-05	v3	1 / 16	approved	No
728	amnon	dominant feces, homo sapiens, hospital, adult, kingdom of spain, clostridium difficile intestinal infectious disease, clostridium difficile infection, valladolid	2021-01-05	v3	1 / 21	approved	No

Problems / suggestions? Please visit the dbBact forum