Experiment ID: 776

Field Description
namececal microbiome profile of hawaiian feral chickens and pasture-raised broiler (commercial) chickens determined using 16s rrna amplicon sequencing
sraprjna644775
doihttps://doi.org/10.1016/j.psj.2021.101181
datamd52eae5b7b9cc2589ea6c8d0c3353a65cd
mapmd5c5f30b069ec422fbce7e0b0eca0ea8ab

Annotations for experiment:

term enrichment score
TermScore
age 15-20 weeks0.500000
feral0.500000
hawaii0.333333
age 5 weeks0.333333
LOWER IN age 15-20 weeks0.250000
LOWER IN feral0.250000
LOWER IN broiler chicken0.200000
LOWER IN age 5 weeks0.200000
broiler chicken0.181818
LOWER IN research facility0.153846
LOWER IN captive0.142857
LOWER IN wild0.100000
chicken0.095238
gallus gallus0.090909
captive0.060606
wild0.052632
caecum0.040000
research facility0.010638
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN age 15-20 weeks0.500000
LOWER IN feral0.500000
age 15-20 weeks0.500000
feral0.500000
age 5 weeks0.250000
LOWER IN broiler chicken0.250000
LOWER IN age 5 weeks0.250000
hawaii0.200000
LOWER IN research facility0.142857
LOWER IN captive0.125000
broiler chicken0.111111
LOWER IN wild0.071429
chicken0.050000
gallus gallus0.047619
captive0.032258
wild0.027778
caecum0.020408
research facility0.005376
Fraction of annotations for the query sequences containing the term
TermScore
caecum1.000000
gallus gallus1.000000
hawaii1.000000
chicken1.000000
research facility0.500000
captive0.500000
broiler chicken0.500000
age 5 weeks0.500000
age 15-20 weeks0.500000
feral0.500000
wild0.500000
LOWER IN age 15-20 weeks0.166667
LOWER IN feral0.166667
LOWER IN wild0.166667
LOWER IN research facility0.166667
LOWER IN captive0.166667
LOWER IN broiler chicken0.166667
LOWER IN age 5 weeks0.166667
Number of experiments associating the term to the sequence
TermScore
research facility1.000000
caecum1.000000
gallus gallus1.000000
hawaii1.000000
chicken1.000000
captive1.000000
broiler chicken1.000000
age 5 weeks1.000000
LOWER IN age 15-20 weeks1.000000
LOWER IN feral1.000000
LOWER IN wild1.000000
age 15-20 weeks1.000000
feral1.000000
wild1.000000
LOWER IN research facility1.000000
LOWER IN captive1.000000
LOWER IN broiler chicken1.000000
LOWER IN age 5 weeks1.000000

Problems / suggestions? Please visit the dbBact forum