Experiment ID: 782

Field Description
nameeffects of aging on the skin and gill microbiota of farmed seabass and seabream
doihttps://doi.org/10.1186/s42523-020-00072-2
sraprjna687505
mapmd55d71a9dc0c8712e84500f07cf27105b5
datamd56280dfc7295618755f15a5ad1673c3dc

Annotations for experiment:

term enrichment score
TermScore
ria formosa0.666667
open water pond0.666667
dicentrarchus labrax0.500000
seabass0.500000
portuguese republic0.500000
sparus aurata0.500000
seabream0.500000
fish farm0.333333
gill0.285714
age 3 years0.222222
LOWER IN age 3 years0.222222
LOWER IN juvenile organism0.166667
juvenile organism0.166667
adult organism0.142857
LOWER IN adult organism0.142857
LOWER IN sparus aurata0.142857
LOWER IN seabream0.142857
LOWER IN dicentrarchus labrax0.142857
LOWER IN seabass0.142857
LOWER IN age 1-2 years0.142857
age 1-2 years0.142857
LOWER IN age 1 year0.125000
age 1 year0.125000
LOWER IN gill0.117647
skin0.057143
LOWER IN skin0.044444
Fraction of dbbact annotations with this term covered by the query
TermScore
dicentrarchus labrax0.500000
seabass0.500000
LOWER IN sparus aurata0.500000
LOWER IN seabream0.500000
ria formosa0.500000
open water pond0.500000
sparus aurata0.500000
seabream0.500000
LOWER IN dicentrarchus labrax0.500000
LOWER IN seabass0.500000
LOWER IN age 1-2 years0.500000
age 1-2 years0.500000
portuguese republic0.333333
age 3 years0.333333
LOWER IN age 3 years0.333333
LOWER IN age 1 year0.250000
age 1 year0.250000
fish farm0.200000
gill0.200000
LOWER IN gill0.200000
LOWER IN juvenile organism0.166667
juvenile organism0.166667
adult organism0.125000
LOWER IN adult organism0.125000
skin0.030303
LOWER IN skin0.030303
Fraction of annotations for the query sequences containing the term
TermScore
fish farm1.000000
portuguese republic1.000000
ria formosa1.000000
open water pond1.000000
dicentrarchus labrax0.500000
seabass0.500000
gill0.500000
skin0.500000
sparus aurata0.500000
seabream0.500000
adult organism0.166667
age 3 years0.166667
LOWER IN juvenile organism0.166667
juvenile organism0.166667
LOWER IN adult organism0.166667
LOWER IN age 3 years0.166667
LOWER IN sparus aurata0.083333
LOWER IN seabream0.083333
LOWER IN gill0.083333
LOWER IN age 1 year0.083333
LOWER IN dicentrarchus labrax0.083333
LOWER IN seabass0.083333
LOWER IN skin0.083333
age 1 year0.083333
LOWER IN age 1-2 years0.083333
age 1-2 years0.083333
Exp. ID User ID Description Date Region Flag Sequences
782amnondominant fish farm, gill, portuguese republic, sparus aurata, ria formosa, open water pond, seabream2021-05-07v4No1 / 12
782amnondominant fish farm, skin, portuguese republic, sparus aurata, ria formosa, open water pond, seabream2021-05-07v4No1 / 13
782amnondominant fish farm, gill, portuguese republic, dicentrarchus labrax, ria formosa, open water pond, seabass2021-05-07v4No1 / 21
782amnondominant fish farm, skin, portuguese republic, dicentrarchus labrax, ria formosa, open water pond, seabass2021-05-07v4No1 / 21
782amnon high in adult organism age 3 years compared to juvenile organism age 1-2 years in fish farm skin portuguese republic sparus aurata ria formosa open water pond seabream 2021-05-06v4No1 / 27
782amnoncommon fish farm, gill, portuguese republic, sparus aurata, ria formosa, open water pond, seabream2021-05-07v4No1 / 40
782amnon high in juvenile organism age 1-2 years compared to adult organism age 3 years in fish farm skin portuguese republic sparus aurata ria formosa open water pond seabream 2021-05-06v4No1 / 41
782amnon high in juvenile organism age 1-2 years compared to adult organism age 3 years in fish farm gill portuguese republic sparus aurata ria formosa open water pond seabream 2021-05-06v4No1 / 43
782amnoncommon fish farm, skin, portuguese republic, sparus aurata, ria formosa, open water pond, seabream2021-05-07v4No1 / 52
782amnon high in adult organism age 3 years compared to juvenile organism age 1-2 years in fish farm gill portuguese republic sparus aurata ria formosa open water pond seabream 2021-05-06v4No1 / 66
782amnon high in juvenile organism age 1 year compared to adult organism age 3 years in fish farm skin portuguese republic dicentrarchus labrax ria formosa open water pond seabass 2021-05-07v4No1 / 67
782amnoncommon fish farm, skin, portuguese republic, dicentrarchus labrax, ria formosa, open water pond, seabass2021-05-07v4No1 / 72
782amnoncommon fish farm, gill, portuguese republic, dicentrarchus labrax, ria formosa, open water pond, seabass2021-05-07v4No1 / 82
782amnon high in juvenile organism age 1 year compared to adult organism age 3 years in fish farm gill portuguese republic dicentrarchus labrax ria formosa open water pond seabass 2021-05-07v4No1 / 87
782amnon high in gill compared to skin in fish farm portuguese republic dicentrarchus labrax ria formosa open water pond seabass 2021-05-06v4No1 / 114
782amnon high in gill compared to skin in fish farm portuguese republic sparus aurata ria formosa open water pond seabream 2021-05-06v4No1 / 132
782amnon high in adult organism age 3 years compared to juvenile organism age 1 year in fish farm gill portuguese republic dicentrarchus labrax ria formosa open water pond seabass 2021-05-07v4No1 / 147
782amnon high in sparus aurata seabream compared to dicentrarchus labrax seabass in fish farm skin portuguese republic ria formosa open water pond 2021-05-06v4No1 / 149
782amnon high in sparus aurata seabream compared to dicentrarchus labrax seabass in fish farm gill portuguese republic ria formosa open water pond 2021-05-06v4No1 / 174
782amnon high in adult organism age 3 years compared to juvenile organism age 1 year in fish farm skin portuguese republic dicentrarchus labrax ria formosa open water pond seabass 2021-05-07v4No1 / 183
782amnon high in skin compared to gill in fish farm portuguese republic dicentrarchus labrax ria formosa open water pond seabass 2021-05-06v4No1 / 304
782amnon high in skin compared to gill in fish farm portuguese republic sparus aurata ria formosa open water pond seabream 2021-05-06v4No1 / 325
782amnon high in dicentrarchus labrax seabass compared to sparus aurata seabream in fish farm skin portuguese republic ria formosa open water pond 2021-05-06v4No1 / 419
782amnon high in dicentrarchus labrax seabass compared to sparus aurata seabream in fish farm gill portuguese republic ria formosa open water pond 2021-05-06v4No1 / 477

Problems / suggestions? Please email info AT dbbact DOT org