Experiment ID: 787

Field Description
namereal-time monitoring of ruminal microbiota reveals their roles in dairy goats during subacute ruminal acidosis
doihttps://doi.org/10.1038/s41522-021-00215-6
sraprjna662847
mapmd515a35b1b88c49fc2c171fcf58e5e1be9
datamd578df6f4dc25ec45a3611ce0c7bceca21

Annotations for experiment:

term enrichment score
TermScore
dairy goat0.666667
shanxi province0.500000
acidosis0.428571
subacute rumen acidosis0.428571
ruminal fluid0.285714
capra hircus0.285714
goat0.285714
LOWER IN acidosis0.200000
LOWER IN subacute rumen acidosis0.200000
5-6 hours0.200000
LOWER IN 1-2 hours0.200000
1-2 hours0.200000
LOWER IN 5-6 hours0.200000
rumen0.095238
research facility0.013514
china0.011561
control0.010657
LOWER IN control0.010363
Fraction of dbbact annotations with this term covered by the query
TermScore
dairy goat0.500000
LOWER IN acidosis0.500000
LOWER IN subacute rumen acidosis0.500000
acidosis0.500000
subacute rumen acidosis0.500000
5-6 hours0.500000
LOWER IN 1-2 hours0.500000
1-2 hours0.500000
LOWER IN 5-6 hours0.500000
shanxi province0.333333
ruminal fluid0.166667
capra hircus0.166667
goat0.166667
rumen0.050000
research facility0.006803
china0.005814
control0.005405
LOWER IN control0.005405
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
rumen1.000000
ruminal fluid1.000000
capra hircus1.000000
china1.000000
shanxi province1.000000
goat1.000000
dairy goat1.000000
control0.375000
acidosis0.375000
subacute rumen acidosis0.375000
LOWER IN acidosis0.125000
LOWER IN subacute rumen acidosis0.125000
LOWER IN control0.125000
5-6 hours0.125000
LOWER IN 1-2 hours0.125000
1-2 hours0.125000
LOWER IN 5-6 hours0.125000
Exp. ID User ID Description Date Region Flag Sequences
787amnondominant control, research facility, rumen, ruminal fluid, capra hircus, china, shanxi province, goat, dairy goat2021-05-23v3No1 / 11
787amnoncommon in high grain diet induced subacute acidosis (dominant research facility, rumen, ruminal fluid, acidosis, capra hircus, china, shanxi province, goat, dairy goat, subacute rumen acidosis)2021-05-23v3No1 / 15
787amnonhigher in first 2 hours compared to 5-6 hours following eating ( high in 1-2 hours compared to 5-6 hours in research facility rumen ruminal fluid capra hircus china shanxi province goat dairy goat )2021-05-23v3No1 / 96
787amnonlower in first 2 hours compared to 5-6 hours following eating ( high in 5-6 hours compared to 1-2 hours in research facility rumen ruminal fluid capra hircus china shanxi province goat dairy goat )2021-05-23v3No1 / 101
787amnonhigher in excess grain induced rumen acidosis compared to healthy controls ( high in acidosis subacute rumen acidosis compared to control in research facility rumen ruminal fluid capra hircus china shanxi province goat dairy goat )2021-05-23v3No1 / 207
787amnoncommon in high grain diet induced subacute acidosis (common research facility, rumen, ruminal fluid, acidosis, capra hircus, china, shanxi province, goat, dairy goat, subacute rumen acidosis)2021-05-23v3No1 / 463
787amnonlower in excess grain induced rumen acidosis compared to healthy controls ( high in control compared to acidosis subacute rumen acidosis in research facility rumen ruminal fluid capra hircus china shanxi province goat dairy goat )2021-05-23v3No1 / 504
787amnoncommon control, research facility, rumen, ruminal fluid, capra hircus, china, shanxi province, goat, dairy goat2021-05-23v3No1 / 700

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