Experiment ID: 787

Field Description
namereal-time monitoring of ruminal microbiota reveals their roles in dairy goats during subacute ruminal acidosis
doihttps://doi.org/10.1038/s41522-021-00215-6
sraprjna662847
mapmd515a35b1b88c49fc2c171fcf58e5e1be9
datamd578df6f4dc25ec45a3611ce0c7bceca21

Annotations for experiment:

term enrichment score
TermScore
dairy goat0.666667
acidosis0.428571
subacute rumen acidosis0.428571
shanxi province0.400000
capra hircus0.285714
goat0.285714
ruminal fluid0.250000
LOWER IN acidosis0.200000
LOWER IN subacute rumen acidosis0.200000
5-6 hours0.200000
LOWER IN 1-2 hours0.200000
LOWER IN 5-6 hours0.200000
1-2 hours0.200000
rumen0.083333
research facility0.012270
china0.010753
control0.010381
LOWER IN control0.010101
Fraction of dbbact annotations with this term covered by the query
TermScore
dairy goat0.500000
LOWER IN acidosis0.500000
LOWER IN subacute rumen acidosis0.500000
acidosis0.500000
subacute rumen acidosis0.500000
5-6 hours0.500000
LOWER IN 1-2 hours0.500000
LOWER IN 5-6 hours0.500000
1-2 hours0.500000
shanxi province0.250000
capra hircus0.166667
goat0.166667
ruminal fluid0.142857
rumen0.043478
research facility0.006173
china0.005405
control0.005263
LOWER IN control0.005263
Fraction of annotations for the query sequences containing the term
TermScore
capra hircus1.000000
goat1.000000
china1.000000
research facility1.000000
ruminal fluid1.000000
rumen1.000000
shanxi province1.000000
dairy goat1.000000
control0.375000
acidosis0.375000
subacute rumen acidosis0.375000
LOWER IN acidosis0.125000
LOWER IN subacute rumen acidosis0.125000
LOWER IN control0.125000
5-6 hours0.125000
LOWER IN 1-2 hours0.125000
LOWER IN 5-6 hours0.125000
1-2 hours0.125000
Number of experiments associating the term to the sequence
TermScore
control1.000000
capra hircus1.000000
goat1.000000
china1.000000
research facility1.000000
ruminal fluid1.000000
rumen1.000000
shanxi province1.000000
dairy goat1.000000
LOWER IN acidosis1.000000
LOWER IN subacute rumen acidosis1.000000
acidosis1.000000
subacute rumen acidosis1.000000
LOWER IN control1.000000
5-6 hours1.000000
LOWER IN 1-2 hours1.000000
LOWER IN 5-6 hours1.000000
1-2 hours1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
787amnondominant control, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat2021-05-23v31 / 11approvedNo
787amnoncommon in high grain diet induced subacute acidosis (dominant acidosis, subacute rumen acidosis, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat)2021-05-23v31 / 15approvedNo
787amnonhigher in first 2 hours compared to 5-6 hours following eating ( high in 1-2 hours compared to 5-6 hours in capra hircus goat china research facility ruminal fluid rumen shanxi province dairy goat )2021-05-23v31 / 96approvedNo
787amnonlower in first 2 hours compared to 5-6 hours following eating ( high in 5-6 hours compared to 1-2 hours in dairy goat shanxi province rumen ruminal fluid research facility china goat capra hircus )2021-05-23v31 / 101approvedNo
787amnonhigher in excess grain induced rumen acidosis compared to healthy controls ( high in subacute rumen acidosis acidosis compared to control in dairy goat shanxi province rumen ruminal fluid research facility china goat capra hircus )2021-05-23v31 / 207approvedNo
787amnoncommon in high grain diet induced subacute acidosis (common acidosis, subacute rumen acidosis, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat)2021-05-23v31 / 463approvedNo
787amnonlower in excess grain induced rumen acidosis compared to healthy controls ( high in control compared to acidosis subacute rumen acidosis in dairy goat shanxi province rumen ruminal fluid research facility china goat capra hircus )2021-05-23v31 / 504approvedNo
787amnoncommon control, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat2021-05-23v31 / 700approvedNo

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