dbBact

Field	Description
name	the effect of cigarette smoking on the oral and nasal microbiota
doi	https://doi.org/10.1186/s40168-016-0226-6
sra	prjna316469
mapmd5	cd27cac002c6c6d932964e776afc6bbe
datamd5	6c301595c1f7ec046d688c7350b8a994

term enrichment score

Term	Score
dorsum of tongue	0.186047
oral wash	0.183673
LOWER IN oral wash	0.183673
state of new york	0.153846
hard palate	0.146341
gingiva	0.146341
keratinized gingiva	0.146341
buccal mucosa	0.145455
external naris	0.127660
palatine tonsil	0.120000
mouth mucosa	0.112676
oral cavity	0.111801
LOWER IN oral cavity	0.111801
supragingival dental plaque	0.107143
supragingival plaque	0.092308
pair of nares	0.077922
dentition	0.057692
LOWER IN gingiva	0.054054
LOWER IN keratinized gingiva	0.054054
LOWER IN hard palate	0.054054
smoker	0.052632
cigarette smoking	0.052632
LOWER IN external naris	0.051282
nicotine dependence	0.051282
LOWER IN non-smoker	0.051282
LOWER IN palatine tonsil	0.050000
LOWER IN buccal mucosa	0.050000
mouth	0.048193
LOWER IN supragingival dental plaque	0.047619
LOWER IN mouth mucosa	0.045455
LOWER IN supragingival plaque	0.044444
LOWER IN pair of nares	0.040816
saliva	0.034682
LOWER IN dentition	0.034483
LOWER IN saliva	0.024691
adult	0.011494
united states of america	0.008065
homo sapiens	0.007353

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN gingiva	0.500000
LOWER IN keratinized gingiva	0.500000
dorsum of tongue	0.500000
LOWER IN hard palate	0.500000
hard palate	0.500000
gingiva	0.500000
keratinized gingiva	0.500000
smoker	0.333333
cigarette smoking	0.333333
LOWER IN external naris	0.250000
external naris	0.250000
nicotine dependence	0.250000
LOWER IN non-smoker	0.250000
LOWER IN palatine tonsil	0.200000
LOWER IN buccal mucosa	0.200000
palatine tonsil	0.200000
buccal mucosa	0.200000
oral wash	0.142857
LOWER IN oral wash	0.142857
LOWER IN supragingival dental plaque	0.142857
supragingival dental plaque	0.142857
LOWER IN mouth mucosa	0.111111
mouth mucosa	0.111111
LOWER IN supragingival plaque	0.100000
supragingival plaque	0.100000
state of new york	0.083333
oral cavity	0.071429
LOWER IN pair of nares	0.071429
LOWER IN oral cavity	0.071429
pair of nares	0.071429
LOWER IN dentition	0.043478
dentition	0.043478
mouth	0.041667
saliva	0.021739
LOWER IN saliva	0.021739
adult	0.005780
united states of america	0.004049
homo sapiens	0.003690

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
united states of america	1.000000
adult	1.000000
state of new york	1.000000
oral cavity	0.257143
oral wash	0.257143
LOWER IN oral cavity	0.257143
LOWER IN oral wash	0.257143
dorsum of tongue	0.114286
mouth mucosa	0.114286
buccal mucosa	0.114286
saliva	0.085714
palatine tonsil	0.085714
dentition	0.085714
supragingival plaque	0.085714
supragingival dental plaque	0.085714
pair of nares	0.085714
external naris	0.085714
hard palate	0.085714
gingiva	0.085714
keratinized gingiva	0.085714
mouth	0.057143
LOWER IN gingiva	0.028571
LOWER IN keratinized gingiva	0.028571
LOWER IN pair of nares	0.028571
LOWER IN external naris	0.028571
LOWER IN palatine tonsil	0.028571
LOWER IN dentition	0.028571
LOWER IN supragingival plaque	0.028571
LOWER IN supragingival dental plaque	0.028571
LOWER IN mouth mucosa	0.028571
LOWER IN buccal mucosa	0.028571
LOWER IN hard palate	0.028571
LOWER IN saliva	0.028571
nicotine dependence	0.028571
smoker	0.028571
cigarette smoking	0.028571
LOWER IN non-smoker	0.028571

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
806	amnon	high in nicotine dependence smoker cigarette smoking compared to non-smoker in homo sapiens united states of america mouth mucosa adult state of new york buccal mucosa	2021-06-19	v3	No	1 / 1
806	amnon	high in mouth mucosa buccal mucosa compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 3
806	amnon	high in hard palate compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 5
806	amnon	high in oral cavity oral wash compared to saliva in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 7
806	amnon	high in dentition supragingival plaque supragingival dental plaque compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 10
806	amnon	high in palatine tonsil compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 11
806	amnon	high in saliva compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 12
806	amnon	dominant homo sapiens, united states of america, adult, state of new york, gingiva, keratinized gingiva	2021-06-19	v3	No	1 / 12
806	amnon	dominant homo sapiens, united states of america, oral cavity, adult, state of new york, oral wash, mouth	2021-06-19	v3	No	1 / 13
806	amnon	dominant homo sapiens, united states of america, adult, state of new york, dorsum of tongue	2021-06-19	v3	No	1 / 15
806	amnon	dominant homo sapiens, united states of america, dentition, adult, state of new york, supragingival plaque, supragingival dental plaque	2021-06-19	v3	No	1 / 15
806	amnon	high in dorsum of tongue compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 17
806	amnon	dominant homo sapiens, united states of america, adult, state of new york, hard palate	2021-06-19	v3	No	1 / 18
806	amnon	dominant homo sapiens, united states of america, mouth mucosa, adult, state of new york, buccal mucosa	2021-06-19	v3	No	1 / 18
806	amnon	dominant homo sapiens, united states of america, pair of nares, adult, state of new york, external naris	2021-06-19	v3	No	1 / 18
806	amnon	dominant homo sapiens, united states of america, adult, state of new york, palatine tonsil	2021-06-19	v3	No	1 / 19
806	amnon	dominant homo sapiens, united states of america, saliva, adult, state of new york	2021-06-19	v3	No	1 / 21
806	amnon	common homo sapiens, united states of america, adult, state of new york, gingiva, keratinized gingiva	2021-06-19	v3	No	1 / 22
806	amnon	high in gingiva keratinized gingiva compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 28
806	amnon	common homo sapiens, united states of america, adult, state of new york, dorsum of tongue	2021-06-19	v3	No	1 / 29
806	amnon	common homo sapiens, united states of america, adult, state of new york, hard palate	2021-06-19	v3	No	1 / 31
806	amnon	high in pair of nares external naris compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 32
806	amnon	common homo sapiens, united states of america, pair of nares, adult, state of new york, external naris	2021-06-19	v3	No	1 / 38
806	amnon	common homo sapiens, united states of america, mouth mucosa, adult, state of new york, buccal mucosa	2021-06-19	v3	No	1 / 40
806	amnon	common homo sapiens, united states of america, dentition, adult, state of new york, supragingival plaque, supragingival dental plaque	2021-06-19	v3	No	1 / 41
806	amnon	high in oral cavity oral wash compared to hard palate in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 48
806	amnon	common homo sapiens, united states of america, adult, state of new york, palatine tonsil	2021-06-19	v3	No	1 / 48
806	amnon	high in oral cavity oral wash compared to mouth mucosa buccal mucosa in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 57
806	amnon	high in oral cavity oral wash compared to dentition supragingival plaque supragingival dental plaque in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 58
806	amnon	common homo sapiens, united states of america, oral cavity, adult, state of new york, oral wash, mouth	2021-06-19	v3	No	1 / 86
806	amnon	high in oral cavity oral wash compared to palatine tonsil in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 87
806	amnon	common homo sapiens, united states of america, saliva, adult, state of new york	2021-06-19	v3	No	1 / 106
806	amnon	high in dorsum of tongue compared to oral cavity oral wash in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 126
806	amnon	high in oral cavity oral wash compared to pair of nares external naris in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 178
806	amnon	high in oral cavity oral wash compared to gingiva keratinized gingiva in homo sapiens united states of america adult state of new york	2021-06-19	v3	No	1 / 288

Experiment ID: 806

Annotations for experiment: