Experiment ID: 83

Field Description
nameillumina miseq phylogenetic amplicon sequencing shows a large reduction of an uncharacterised succinivibrionaceae and an increase of the methanobrevibacter gottschalkii clade in feed restricted cattle
srasrp060573
datamd57676226aed130ef7e756d8fc9fa30199
mapmd5dda6182df57ade04db6279634d15777e

Annotations for experiment:

term enrichment score
TermScore
holstein-friesian bull0.666667
ireland0.400000
restricted feed0.200000
LOWER IN normal feed0.200000
LOWER IN restricted diet0.200000
660 days0.200000
LOWER IN 605 days0.200000
605 days0.200000
LOWER IN 660 days0.200000
rumen solids0.200000
LOWER IN rumen liquid0.200000
LOWER IN rumen solids0.200000
rumen liquid0.181818
bos taurus0.153846
normal diet0.153846
rumen0.142857
age0.080000
diet0.071429
LOWER IN control0.013245
control0.013158
Fraction of dbbact annotations with this term covered by the query
TermScore
holstein-friesian bull0.500000
restricted feed0.500000
LOWER IN normal feed0.500000
LOWER IN restricted diet0.500000
660 days0.500000
LOWER IN 605 days0.500000
605 days0.500000
LOWER IN 660 days0.500000
rumen solids0.500000
LOWER IN rumen liquid0.500000
LOWER IN rumen solids0.500000
rumen liquid0.333333
ireland0.250000
normal diet0.200000
bos taurus0.083333
rumen0.076923
age0.047619
diet0.041667
LOWER IN control0.006993
control0.006944
Fraction of annotations for the query sequences containing the term
TermScore
bos taurus1.000000
rumen1.000000
holstein-friesian bull1.000000
ireland1.000000
diet0.250000
age0.250000
restricted feed0.125000
LOWER IN control0.125000
LOWER IN normal feed0.125000
control0.125000
LOWER IN restricted diet0.125000
normal diet0.125000
660 days0.125000
LOWER IN 605 days0.125000
605 days0.125000
LOWER IN 660 days0.125000
rumen solids0.125000
LOWER IN rumen liquid0.125000
rumen liquid0.125000
LOWER IN rumen solids0.125000

Problems / suggestions? Please email info AT dbbact DOT org