dbBact

Experiment ID: 850

Field	Description
name	microbiome compositions from infertile couples seeking in vitro fertilization, using 16s rrna gene sequencing methods: any correlation to clinical outcomes?
sra	prjna762524
sra	https://dx.doi.org/10.3389%2ffcimb.2021.709372
datamd5	eaa788acb579bceb130edaa796236336
mapmd5	4914ff37c088dc597ed404ab2998e084

Annotations for experiment:

term enrichment score

Term	Score
anambra state	0.666667
in vitro fertilization clinic	0.666667
semen	0.545455
sperm	0.545455
nigeria	0.285714
LOWER IN vagina	0.222222
LOWER IN female organism	0.142857
vagina	0.114286
male organism	0.107143
female organism	0.093023
adult	0.008621
homo sapiens	0.005510

Fraction of dbbact annotations with this term covered by the query

Term	Score
semen	0.500000
sperm	0.500000
anambra state	0.500000
in vitro fertilization clinic	0.500000
LOWER IN vagina	0.250000
nigeria	0.166667
LOWER IN female organism	0.111111
vagina	0.066667
male organism	0.058824
female organism	0.052632
adult	0.004329
homo sapiens	0.002762

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
adult	1.000000
nigeria	1.000000
anambra state	1.000000
in vitro fertilization clinic	1.000000
male organism	0.600000
semen	0.600000
sperm	0.600000
vagina	0.400000
female organism	0.400000
LOWER IN vagina	0.200000
LOWER IN female organism	0.200000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
adult	1.000000
nigeria	1.000000
male organism	1.000000
semen	1.000000
sperm	1.000000
anambra state	1.000000
in vitro fertilization clinic	1.000000
vagina	1.000000
female organism	1.000000
LOWER IN vagina	1.000000
LOWER IN female organism	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
850	amnon	common homo sapiens, vagina, adult, nigeria, female organism, anambra state, in vitro fertilization clinic	2021-12-16	v4	1 / 2	approved	No
850	amnon	common homo sapiens, adult, nigeria, male organism, semen, sperm, anambra state, in vitro fertilization clinic	2021-12-16	v4	1 / 4	approved	No
850	amnon	high in male organism semen sperm compared to vagina female organism in homo sapiens adult nigeria anambra state in vitro fertilization clinic	2021-12-16	v4	1 / 7	approved	No
850	amnon	dominant homo sapiens, vagina, adult, nigeria, female organism, anambra state, in vitro fertilization clinic	2021-12-16	v4	1 / 14	approved	No
850	amnon	dominant homo sapiens, adult, nigeria, male organism, semen, sperm, anambra state, in vitro fertilization clinic	2021-12-16	v4	1 / 15	approved	No

Problems / suggestions? Please visit the dbBact forum