dbBact

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Experiment ID: 850

Field	Description
name	microbiome compositions from infertile couples seeking in vitro fertilization, using 16s rrna gene sequencing methods: any correlation to clinical outcomes?
sra	https://dx.doi.org/10.3389%2ffcimb.2021.709372
sra	prjna762524
mapmd5	4914ff37c088dc597ed404ab2998e084
datamd5	eaa788acb579bceb130edaa796236336

Annotations for experiment:

term enrichment score

Term	Score
in vitro fertilization clinic	0.666667
anambra state	0.666667
sperm	0.545455
semen	0.545455
nigeria	0.285714
LOWER IN vagina	0.250000
LOWER IN female organism	0.153846
male organism	0.127660
vagina	0.121212
female organism	0.097561
adult	0.009662
homo sapiens	0.006173

Fraction of dbbact annotations with this term covered by the query

Term	Score
in vitro fertilization clinic	0.500000
anambra state	0.500000
sperm	0.500000
semen	0.500000
LOWER IN vagina	0.333333
nigeria	0.166667
LOWER IN female organism	0.125000
male organism	0.071429
vagina	0.071429
female organism	0.055556
adult	0.004854
homo sapiens	0.003096

Fraction of annotations for the query sequences containing the term

Term	Score
in vitro fertilization clinic	1.000000
anambra state	1.000000
nigeria	1.000000
adult	1.000000
homo sapiens	1.000000
sperm	0.600000
semen	0.600000
male organism	0.600000
female organism	0.400000
vagina	0.400000
LOWER IN vagina	0.200000
LOWER IN female organism	0.200000

Number of experiments associating the term to the sequence

Term	Score
in vitro fertilization clinic	1.000000
anambra state	1.000000
sperm	1.000000
semen	1.000000
male organism	1.000000
nigeria	1.000000
adult	1.000000
homo sapiens	1.000000
female organism	1.000000
vagina	1.000000
LOWER IN vagina	1.000000
LOWER IN female organism	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
850	amnon	common in vitro fertilization clinic, adult, anambra state, nigeria, female organism, vagina, homo sapiens	2021-12-16	v4	1 / 2	approved	No
850	amnon	common sperm, semen, male organism, in vitro fertilization clinic, anambra state, nigeria, adult, homo sapiens	2021-12-16	v4	1 / 4	approved	No
850	amnon	high in semen sperm male organism compared to vagina female organism in in vitro fertilization clinic anambra state nigeria adult homo sapiens	2021-12-16	v4	1 / 7	approved	No
850	amnon	dominant in vitro fertilization clinic, anambra state, female organism, nigeria, adult, vagina, homo sapiens	2021-12-16	v4	1 / 14	approved	No
850	amnon	dominant in vitro fertilization clinic, anambra state, sperm, semen, male organism, nigeria, adult, homo sapiens	2021-12-16	v4	1 / 15	approved	No

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