Experiment ID: 861

Field Description
namegut microbiome profiling of a rural and urban south african cohort reveals biomarkers of a population in lifestyle transition
doihttps://doi.org/10.1186/s12866-020-02017-w
sraprjeb40733
mapmd5f9acf6009bbd129c1b765d6655ea4f88
datamd5eb9636635aa03bd7c257d0569d223c84

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
bushbuckridge local municipality0.500000
peri-urban community0.500000
LOWER IN soweto0.500000
LOWER IN urban community0.500000
soweto0.500000
urban community0.500000
LOWER IN bushbuckridge local municipality0.500000
LOWER IN peri-urban community0.500000
human middle aged stage0.333333
rural community0.090909
LOWER IN rural community0.090909
south africa0.071429
LOWER IN city0.050000
city0.050000
female0.015873
homo sapiens0.003690
feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
female1.000000
south africa1.000000
rural community0.833333
human middle aged stage0.666667
bushbuckridge local municipality0.500000
peri-urban community0.500000
city0.500000
soweto0.500000
urban community0.500000
LOWER IN city0.166667
LOWER IN soweto0.166667
LOWER IN urban community0.166667
LOWER IN rural community0.166667
LOWER IN bushbuckridge local municipality0.166667
LOWER IN peri-urban community0.166667

Problems / suggestions? Please email info AT dbbact DOT org