Experiment ID: 873

Field Description
nameprjna395034
namepopulation structure of human gut bacteria in a diverse cohort from rural tanzania and botswana
doihttps://doi.org/10.1186/s13059-018-1616-9
mapmd5afd740d786a29dda0bd97ed7f27b2187
datamd577befb04acab21e175eea1ae68e1526e

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN botswana1.000000
botswana1.000000
urban community0.500000
LOWER IN urban community0.500000
LOWER IN hadza0.500000
hadza0.500000
tanzania0.250000
LOWER IN tanzania0.250000
LOWER IN hunter gatherer0.250000
hunter gatherer0.250000
commonwealth of pennsylvania0.111111
LOWER IN commonwealth of pennsylvania0.111111
rural community0.090909
LOWER IN rural community0.090909
human adult stage0.045455
africa0.026316
LOWER IN africa0.026316
adult0.005780
united states of america0.004049
LOWER IN united states of america0.004049
homo sapiens0.003690
feces0.003185
maasai0.000000
sandawe0.000000
burunge0.000000
LOWER IN maasai0.000000
LOWER IN sandawe0.000000
LOWER IN burunge0.000000
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
adult1.000000
human adult stage1.000000
rural community0.750000
africa0.666667
tanzania0.500000
commonwealth of pennsylvania0.416667
botswana0.333333
united states of america0.250000
urban community0.250000
LOWER IN botswana0.166667
LOWER IN tanzania0.166667
LOWER IN africa0.083333
LOWER IN rural community0.083333
LOWER IN united states of america0.083333
LOWER IN commonwealth of pennsylvania0.083333
LOWER IN urban community0.083333
maasai0.083333
sandawe0.083333
burunge0.083333
LOWER IN hunter gatherer0.083333
LOWER IN hadza0.083333
hunter gatherer0.083333
hadza0.083333
LOWER IN maasai0.083333
LOWER IN sandawe0.083333
LOWER IN burunge0.083333
Exp. ID User ID Description Date Region Flag Sequences
873amnondominant feces, homo sapiens, united states of america, adult, commonwealth of pennsylvania, human adult stage, urban community2022-03-03v1No1 / 12
873amnondominant feces, homo sapiens, adult, tanzania, africa, rural community, human adult stage2022-03-03v1No1 / 14
873amnondominant feces, homo sapiens, adult, africa, rural community, botswana, human adult stage2022-03-03v1No1 / 15
873amnon high in hunter gatherer hadza compared to maasai sandawe burunge in feces homo sapiens adult tanzania africa commonwealth of pennsylvania rural community human adult stage 2022-03-03v1No1 / 37
873amnon high in maasai sandawe burunge compared to hunter gatherer hadza in feces homo sapiens adult tanzania africa commonwealth of pennsylvania rural community human adult stage 2022-03-03v1No1 / 46
873amnon high in tanzania rural community botswana compared to united states of america commonwealth of pennsylvania urban community in feces homo sapiens adult human adult stage 2022-03-03v1No1 / 73
873amnoncommon feces, homo sapiens, adult, africa, rural community, botswana, human adult stage2022-03-03v1No1 / 81
873amnoncommon feces, homo sapiens, united states of america, adult, commonwealth of pennsylvania, human adult stage, urban community2022-03-03v1No1 / 112
873amnoncommon feces, homo sapiens, adult, tanzania, africa, rural community, human adult stage2022-03-03v1No1 / 125
873amnon high in botswana compared to tanzania in feces homo sapiens adult africa rural community human adult stage 2022-03-03v1No1 / 226
873amnon high in united states of america commonwealth of pennsylvania urban community compared to tanzania africa rural community botswana in feces homo sapiens adult human adult stage 2022-03-03v1No1 / 227
873amnon high in tanzania compared to botswana in feces homo sapiens adult africa rural community human adult stage 2022-03-03v1No1 / 333

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