Experiment ID: 873

Field Description
nameprjna395034
namepopulation structure of human gut bacteria in a diverse cohort from rural tanzania and botswana
doihttps://doi.org/10.1186/s13059-018-1616-9
mapmd5afd740d786a29dda0bd97ed7f27b2187
datamd577befb04acab21e175eea1ae68e1526e

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN botswana0.500000
LOWER IN tanzania0.500000
LOWER IN africa0.500000
botswana0.500000
LOWER IN commonwealth of pennsylvania0.500000
burunge0.500000
sandawe0.500000
maasai0.500000
LOWER IN hadza0.500000
LOWER IN burunge0.500000
LOWER IN sandawe0.500000
LOWER IN maasai0.500000
urban community0.333333
LOWER IN urban community0.333333
LOWER IN hunter gatherer0.333333
hadza0.333333
africa0.200000
hunter gatherer0.200000
tanzania0.166667
LOWER IN rural community0.125000
LOWER IN united states of america0.090909
commonwealth of pennsylvania0.083333
rural community0.062500
human adult stage0.052632
adult0.004854
united states of america0.003546
homo sapiens0.003096
feces0.002611
Fraction of annotations for the query sequences containing the term
TermScore
human adult stage1.000000
adult1.000000
homo sapiens1.000000
feces1.000000
rural community0.750000
africa0.666667
tanzania0.500000
commonwealth of pennsylvania0.416667
botswana0.333333
urban community0.250000
united states of america0.250000
LOWER IN botswana0.166667
LOWER IN tanzania0.166667
LOWER IN africa0.083333
LOWER IN rural community0.083333
LOWER IN urban community0.083333
LOWER IN commonwealth of pennsylvania0.083333
LOWER IN united states of america0.083333
burunge0.083333
sandawe0.083333
maasai0.083333
LOWER IN hunter gatherer0.083333
LOWER IN hadza0.083333
LOWER IN burunge0.083333
LOWER IN sandawe0.083333
LOWER IN maasai0.083333
hunter gatherer0.083333
hadza0.083333
Number of experiments associating the term to the sequence
TermScore
LOWER IN botswana1.000000
tanzania1.000000
human adult stage1.000000
rural community1.000000
africa1.000000
adult1.000000
homo sapiens1.000000
feces1.000000
LOWER IN tanzania1.000000
LOWER IN africa1.000000
LOWER IN rural community1.000000
urban community1.000000
commonwealth of pennsylvania1.000000
united states of america1.000000
botswana1.000000
LOWER IN urban community1.000000
LOWER IN commonwealth of pennsylvania1.000000
LOWER IN united states of america1.000000
burunge1.000000
sandawe1.000000
maasai1.000000
LOWER IN hunter gatherer1.000000
LOWER IN hadza1.000000
LOWER IN burunge1.000000
LOWER IN sandawe1.000000
LOWER IN maasai1.000000
hunter gatherer1.000000
hadza1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
873amnondominant urban community, human adult stage, commonwealth of pennsylvania, adult, united states of america, homo sapiens, feces2022-03-03v11 / 12approvedNo
873amnondominant human adult stage, rural community, africa, tanzania, adult, homo sapiens, feces2022-03-03v11 / 14approvedNo
873amnondominant human adult stage, botswana, rural community, africa, adult, homo sapiens, feces2022-03-03v11 / 15approvedNo
873amnon high in hunter gatherer hadza compared to burunge sandawe maasai in tanzania rural community africa human adult stage commonwealth of pennsylvania adult homo sapiens feces 2022-03-03v11 / 37approvedNo
873amnon high in burunge sandawe maasai compared to hunter gatherer hadza in human adult stage rural community commonwealth of pennsylvania africa tanzania adult homo sapiens feces 2022-03-03v11 / 46approvedNo
873amnon high in tanzania botswana rural community compared to urban community commonwealth of pennsylvania united states of america in human adult stage adult homo sapiens feces 2022-03-03v11 / 73approvedNo
873amnoncommon botswana, human adult stage, rural community, africa, adult, homo sapiens, feces2022-03-03v11 / 81approvedNo
873amnoncommon urban community, commonwealth of pennsylvania, united states of america, human adult stage, adult, homo sapiens, feces2022-03-03v11 / 112approvedNo
873amnoncommon tanzania, human adult stage, rural community, africa, adult, homo sapiens, feces2022-03-03v11 / 125approvedNo
873amnon high in botswana compared to tanzania in africa rural community human adult stage adult homo sapiens feces 2022-03-03v11 / 226approvedNo
873amnon high in urban community commonwealth of pennsylvania united states of america compared to tanzania botswana africa rural community in human adult stage adult feces homo sapiens 2022-03-03v11 / 227approvedNo
873amnon high in tanzania compared to botswana in human adult stage rural community africa adult homo sapiens feces 2022-03-03v11 / 333approvedNo

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