dbBact

Experiment ID: 889

Field	Description
name	the comparative analysis of the ruminal bacterial population in reindeer (rangifer tarandus l.) from the russian arctic zone: regional and seasonal effects
sra	prjna576999
doi	https://doi.org/10.3390/ani11030911
datamd5	6328a98aa28c09e34accdda4204373f0
mapmd5	84d968f43d98b659b486ced42609ef99

Annotations for experiment:

term enrichment score

Term	Score
siberia	0.500000
rangifer tarandus	0.500000
reindeer	0.500000
tundra	0.307692
LOWER IN woodland	0.250000
LOWER IN yamalo-nenets autonomous okrug	0.250000
woodland	0.250000
yamalo-nenets autonomous okrug	0.250000
LOWER IN nenets autonomous okrug	0.250000
nenets autonomous okrug	0.222222
ruminal fluid	0.200000
russia	0.166667
rumen	0.074074
LOWER IN winter season	0.071429
winter season	0.066667
summer season	0.058824
LOWER IN summer season	0.058824

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN woodland	0.500000
LOWER IN yamalo-nenets autonomous okrug	0.500000
woodland	0.500000
yamalo-nenets autonomous okrug	0.500000
LOWER IN nenets autonomous okrug	0.500000
siberia	0.333333
rangifer tarandus	0.333333
reindeer	0.333333
nenets autonomous okrug	0.333333
tundra	0.200000
ruminal fluid	0.111111
russia	0.090909
LOWER IN winter season	0.045455
winter season	0.041667
rumen	0.038462
summer season	0.035714
LOWER IN summer season	0.035714

Fraction of annotations for the query sequences containing the term

Term	Score
rumen	1.000000
russia	1.000000
siberia	1.000000
ruminal fluid	1.000000
rangifer tarandus	1.000000
reindeer	1.000000
tundra	0.666667
summer season	0.166667
LOWER IN winter season	0.166667
nenets autonomous okrug	0.166667
LOWER IN woodland	0.166667
LOWER IN yamalo-nenets autonomous okrug	0.166667
winter season	0.166667
LOWER IN summer season	0.166667
woodland	0.166667
yamalo-nenets autonomous okrug	0.166667
LOWER IN nenets autonomous okrug	0.166667

Number of experiments associating the term to the sequence

Term	Score
summer season	1.000000
LOWER IN winter season	1.000000
tundra	1.000000
rumen	1.000000
russia	1.000000
siberia	1.000000
ruminal fluid	1.000000
rangifer tarandus	1.000000
reindeer	1.000000
nenets autonomous okrug	1.000000
LOWER IN woodland	1.000000
LOWER IN yamalo-nenets autonomous okrug	1.000000
winter season	1.000000
LOWER IN summer season	1.000000
woodland	1.000000
yamalo-nenets autonomous okrug	1.000000
LOWER IN nenets autonomous okrug	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
889	amnon	dominant rumen, russia, siberia, ruminal fluid, rangifer tarandus, reindeer	2022-04-01	v3	1 / 8	approved	No
889	amnon	high in woodland yamalo-nenets autonomous okrug compared to nenets autonomous okrug in tundra rumen russia siberia ruminal fluid rangifer tarandus reindeer	2022-04-01	v3	1 / 151	approved	No
889	amnon	high in winter season compared to summer season in tundra rumen russia siberia ruminal fluid rangifer tarandus reindeer	2022-04-01	v3	1 / 205	approved	No
889	amnon	high in nenets autonomous okrug compared to woodland yamalo-nenets autonomous okrug in tundra rumen russia siberia ruminal fluid rangifer tarandus reindeer	2022-04-01	v3	1 / 247	approved	No
889	amnon	common rumen, russia, siberia, ruminal fluid, rangifer tarandus, reindeer	2022-04-01	v3	1 / 469	approved	No
889	amnon	high in summer season compared to winter season in tundra rumen russia siberia ruminal fluid rangifer tarandus reindeer	2022-04-01	v3	1 / 647	approved	No

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