dbBact

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Experiment ID: 891

Field	Description
name	persistent gut microbiota immaturity in malnourished bangladeshi children
doi	https://doi.org/10.1038/nature13421
sra	prjeb5482
mapmd5	ad4d1e5601630f559532b7b1e7fa19bf
datamd5	fa9e9733a3b8e4dbc352694b2f1693d0

Annotations for experiment:

term enrichment score

Term	Score
urban slum	0.666667
dhaka	0.666667
bangladesh	0.500000
1-year-old human stage	0.100000
under-1-year-old human stage	0.086957
LOWER IN 1-year-old human stage	0.083333
infant stage	0.076923
LOWER IN under-1-year-old human stage	0.074074
infant	0.064516
homo sapiens	0.006897
feces	0.005780

Fraction of dbbact annotations with this term covered by the query

Term	Score
urban slum	0.500000
dhaka	0.500000
bangladesh	0.333333
1-year-old human stage	0.055556
LOWER IN 1-year-old human stage	0.055556
LOWER IN under-1-year-old human stage	0.047619
under-1-year-old human stage	0.047619
infant stage	0.040000
infant	0.033333
homo sapiens	0.003460
feces	0.002899

Fraction of annotations for the query sequences containing the term

Term	Score
urban slum	1.000000
infant stage	1.000000
dhaka	1.000000
bangladesh	1.000000
infant	1.000000
homo sapiens	1.000000
feces	1.000000
1-year-old human stage	0.500000
under-1-year-old human stage	0.500000
LOWER IN under-1-year-old human stage	0.166667
LOWER IN 1-year-old human stage	0.166667

Number of experiments associating the term to the sequence

Term	Score
LOWER IN under-1-year-old human stage	1.000000
1-year-old human stage	1.000000
urban slum	1.000000
infant stage	1.000000
dhaka	1.000000
bangladesh	1.000000
infant	1.000000
homo sapiens	1.000000
feces	1.000000
LOWER IN 1-year-old human stage	1.000000
under-1-year-old human stage	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
891	amnon	dominant urban slum, under-1-year-old human stage, infant stage, dhaka, bangladesh, infant, homo sapiens, feces	2022-04-03	v4	1 / 7	approved	No
891	amnon	common under-1-year-old human stage, urban slum, infant stage, dhaka, bangladesh, infant, homo sapiens, feces	2022-04-03	v4	1 / 8	approved	No
891	amnon	dominant urban slum, 1-year-old human stage, infant stage, dhaka, bangladesh, infant, homo sapiens, feces	2022-04-03	v4	1 / 14	approved	No
891	amnon	common 1-year-old human stage, urban slum, infant stage, dhaka, bangladesh, infant, homo sapiens, feces	2022-04-03	v4	1 / 25	approved	No
891	amnon	high in under-1-year-old human stage compared to 1-year-old human stage in infant infant stage urban slum homo sapiens feces dhaka bangladesh	2022-04-03	v4	1 / 42	approved	No
891	amnon	high in 1-year-old human stage compared to under-1-year-old human stage in urban slum infant stage dhaka bangladesh infant homo sapiens feces	2022-04-03	v4	1 / 363	approved	No

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