Experiment ID: 910

Field Description
nameevolution of rumen and oral microbiota in calves is influenced by age and time of weaning
sraprjeb41435
doihttps://doi.org/10.1186/s42523-021-00095-3
datamd5f8f6c5d146f1ce6c6c5dad0b3e8f60e5
mapmd570986aa42c6c2c83b010ddafdf291f83

Annotations for experiment:

term enrichment score
TermScore
calve0.500000
age 140 days0.424242
juvenile stage0.400000
holstein dairy cow0.400000
age 70 days0.285714
age 42 days0.222222
mouth mucosa0.162162
LOWER IN age 70 days0.142857
LOWER IN age 140 days0.142857
LOWER IN oral cavity0.111111
LOWER IN mouth mucosa0.105263
LOWER IN rumen0.105263
bos taurus0.100000
oral cavity0.093750
germany0.076923
rumen0.066667
research facility0.010695
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN age 70 days0.500000
LOWER IN age 140 days0.500000
calve0.333333
age 140 days0.333333
age 70 days0.333333
age 42 days0.333333
juvenile stage0.250000
holstein dairy cow0.250000
LOWER IN oral cavity0.166667
LOWER IN mouth mucosa0.142857
LOWER IN rumen0.142857
mouth mucosa0.090909
bos taurus0.052632
oral cavity0.050000
germany0.040000
rumen0.038462
research facility0.005376
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
juvenile stage1.000000
bos taurus1.000000
germany1.000000
calve1.000000
holstein dairy cow1.000000
oral cavity0.750000
mouth mucosa0.750000
age 140 days0.583333
rumen0.250000
age 70 days0.250000
age 42 days0.166667
LOWER IN oral cavity0.083333
LOWER IN mouth mucosa0.083333
LOWER IN rumen0.083333
LOWER IN age 70 days0.083333
LOWER IN age 140 days0.083333
Number of experiments associating the term to the sequence
TermScore
rumen1.000000
LOWER IN oral cavity1.000000
LOWER IN mouth mucosa1.000000
research facility1.000000
juvenile stage1.000000
bos taurus1.000000
germany1.000000
calve1.000000
holstein dairy cow1.000000
age 140 days1.000000
oral cavity1.000000
mouth mucosa1.000000
LOWER IN rumen1.000000
LOWER IN age 70 days1.000000
age 70 days1.000000
LOWER IN age 140 days1.000000
age 42 days1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
910amnondominant research facility, juvenile stage, rumen, bos taurus, germany, calve, holstein dairy cow, age 140 days2022-05-20v11 / 6approvedNo
910amnondominant research facility, juvenile stage, oral cavity, mouth mucosa, bos taurus, germany, calve, holstein dairy cow, age 140 days2022-05-20v11 / 9approvedNo
910amnondominant research facility, juvenile stage, oral cavity, mouth mucosa, bos taurus, germany, calve, holstein dairy cow, age 70 days2022-05-20v11 / 10approvedNo
910amnondominant research facility, juvenile stage, oral cavity, mouth mucosa, bos taurus, germany, calve, age 42 days, holstein dairy cow2022-05-20v11 / 15approvedNo
910amnoncommon research facility, juvenile stage, oral cavity, mouth mucosa, bos taurus, germany, calve, holstein dairy cow, age 70 days2022-05-20v11 / 191approvedNo
910amnoncommon research facility, juvenile stage, oral cavity, mouth mucosa, bos taurus, germany, calve, age 42 days, holstein dairy cow2022-05-20v11 / 202approvedNo
910amnoncommon research facility, juvenile stage, oral cavity, mouth mucosa, bos taurus, germany, calve, holstein dairy cow, age 140 days2022-05-20v11 / 245approvedNo
910amnon high in age 70 days compared to age 140 days in research facility juvenile stage oral cavity mouth mucosa bos taurus germany calve holstein dairy cow 2022-05-20v11 / 276approvedNo
910amnon high in age 140 days compared to age 70 days in research facility juvenile stage oral cavity mouth mucosa bos taurus germany calve holstein dairy cow 2022-05-20v11 / 302approvedNo
910amnoncommon research facility, juvenile stage, rumen, bos taurus, germany, calve, holstein dairy cow, age 140 days2022-05-20v11 / 510approvedNo
910amnon high in oral cavity mouth mucosa compared to rumen in research facility juvenile stage bos taurus germany calve holstein dairy cow age 140 days 2022-05-20v11 / 1194approvedNo
910amnon high in rumen compared to oral cavity mouth mucosa in research facility juvenile stage bos taurus germany calve holstein dairy cow age 140 days 2022-05-20v11 / 1744approvedNo

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