dbBact

Experiment ID: 911

Field	Description
name	profile of gut microbiota in patients with traumatic thoracic spinal cord injury and its clinical implications: a case-control study in a rehabilitation setting
sra	prjna669472
doi	https://doi.org/10.1080/21655979.2021.1955543
datamd5	549e3a208f602b6567a03733c522501d
mapmd5	a24d0d3a02e92fb24829aff93b4b5b32

Annotations for experiment:

term enrichment score

Term	Score
spinal cord injury	0.500000
nanjing city prefecture	0.400000
LOWER IN spinal cord injury	0.250000
human adult stage	0.055556
china	0.009615
LOWER IN control	0.009259
control	0.009217
homo sapiens	0.005495
feces	0.004739

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN spinal cord injury	0.500000
spinal cord injury	0.500000
nanjing city prefecture	0.250000
human adult stage	0.028571
china	0.004831
LOWER IN control	0.004762
control	0.004651
homo sapiens	0.002755
feces	0.002375

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
nanjing city prefecture	1.000000
china	1.000000
human adult stage	1.000000
control	0.500000
spinal cord injury	0.500000
LOWER IN spinal cord injury	0.166667
LOWER IN control	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
control	1.000000
nanjing city prefecture	1.000000
china	1.000000
human adult stage	1.000000
LOWER IN spinal cord injury	1.000000
spinal cord injury	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
911	amnon	high in spinal cord injury compared to control in feces homo sapiens nanjing city prefecture china human adult stage	2022-05-21	v4	1 / 21	approved	No
911	amnon	dominant feces, homo sapiens, control, nanjing city prefecture, china, human adult stage	2022-05-21	v4	1 / 21	approved	No
911	amnon	dominant feces, homo sapiens, nanjing city prefecture, spinal cord injury, china, human adult stage	2022-05-21	v4	1 / 25	approved	No
911	amnon	common feces, homo sapiens, nanjing city prefecture, spinal cord injury, china, human adult stage	2022-05-21	v4	1 / 51	approved	No
911	amnon	high in control compared to spinal cord injury in feces homo sapiens nanjing city prefecture china human adult stage	2022-05-21	v4	1 / 56	approved	No
911	amnon	common feces, homo sapiens, control, nanjing city prefecture, china, human adult stage	2022-05-21	v4	1 / 81	approved	No

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