dbBact

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Experiment ID: 945

Field	Description
name	the oral microbiome and lung cancer risk: an analysis of 3 prospective cohort studies
doi	https://doi.org/10.1093/jnci/djac149
sra	prjna801882
mapmd5	cbe324fd45a549a2d29eb50cc96ea80b
datamd5	7df1df3e58b34dc85e18ccfaadf4d15d

Annotations for experiment:

term enrichment score

Term	Score
oral wash	0.250000
LOWER IN cigarette smoking	0.222222
LOWER IN smoker	0.222222
smoker	0.222222
cigarette smoking	0.222222
LOWER IN 65-79 year-old human stage	0.222222
25-44 year-old human stage	0.222222
LOWER IN 25-44 year-old human stage	0.222222
65-79 year-old human stage	0.222222
non-smoker	0.200000
LOWER IN non-smoker	0.200000
oral cavity	0.125000
adult	0.010695
united states of america	0.007692
homo sapiens	0.006897

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN cigarette smoking	0.333333
LOWER IN smoker	0.333333
smoker	0.333333
cigarette smoking	0.333333
LOWER IN 65-79 year-old human stage	0.333333
25-44 year-old human stage	0.333333
LOWER IN 25-44 year-old human stage	0.333333
65-79 year-old human stage	0.333333
non-smoker	0.250000
LOWER IN non-smoker	0.250000
oral wash	0.142857
oral cavity	0.066667
adult	0.005376
united states of america	0.003861
homo sapiens	0.003460

Fraction of annotations for the query sequences containing the term

Term	Score
united states of america	1.000000
adult	1.000000
oral wash	1.000000
oral cavity	1.000000
homo sapiens	1.000000
LOWER IN cigarette smoking	0.166667
LOWER IN smoker	0.166667
non-smoker	0.166667
LOWER IN non-smoker	0.166667
smoker	0.166667
cigarette smoking	0.166667
LOWER IN 65-79 year-old human stage	0.166667
25-44 year-old human stage	0.166667
LOWER IN 25-44 year-old human stage	0.166667
65-79 year-old human stage	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
945	amnon	dominant homo sapiens, oral cavity, oral wash, adult, united states of america	2022-11-29	v4	No	1 / 16
945	amnon	high in 65-79 year-old human stage compared to 25-44 year-old human stage in homo sapiens oral cavity oral wash adult united states of america	2022-11-29	v4	No	1 / 63
945	amnon	common united states of america, adult, oral wash, oral cavity, homo sapiens	2022-11-29	v4	No	1 / 67
945	amnon	high in 25-44 year-old human stage compared to 65-79 year-old human stage in united states of america adult oral wash oral cavity homo sapiens	2022-11-29	v4	No	1 / 142
945	amnon	high in smoker cigarette smoking compared to non-smoker in homo sapiens oral cavity oral wash adult united states of america	2022-11-29	v4	No	1 / 242
945	amnon	high in non-smoker compared to cigarette smoking smoker in united states of america adult oral wash oral cavity homo sapiens	2022-11-29	v4	No	1 / 256

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