Experiment ID: 960

Field Description
namedynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal hiv infection and breastfeeding
doihttps://doi.org/10.1186/s40168-022-01230-1
sraprjna706727
datamd5e7452048f31b6c4d03bae752b10ce8d2
mapmd512c6c3c79e24e4c1c302ad9bbae94747

Annotations for experiment:

term enrichment score
TermScore
edo state0.666667
nigeria0.285714
15-month-old human stage0.266667
9-month-old human stage0.235294
18-month-old human stage0.210526
LOWER IN 9-month-old human stage0.153846
meconium0.153846
LOWER IN 18-month-old human stage0.142857
newborn human stage0.142857
1-month-old human stage0.130435
vagina0.076923
LOWER IN 1-month-old human stage0.071429
oral cavity0.064516
LOWER IN infant0.057143
infant0.055105
LOWER IN adult0.042553
LOWER IN female0.040000
female0.024570
adult0.008532
homo sapiens0.005540
feces0.004782
Fraction of dbbact annotations with this term covered by the query
TermScore
edo state0.500000
LOWER IN 9-month-old human stage0.500000
15-month-old human stage0.500000
meconium0.500000
LOWER IN 18-month-old human stage0.333333
9-month-old human stage0.333333
newborn human stage0.333333
18-month-old human stage0.250000
nigeria0.166667
LOWER IN 1-month-old human stage0.166667
1-month-old human stage0.125000
LOWER IN infant0.076923
vagina0.066667
oral cavity0.050000
LOWER IN adult0.040000
LOWER IN female0.035714
infant0.028571
female0.012987
adult0.004348
homo sapiens0.002778
feces0.002398
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
nigeria1.000000
edo state1.000000
feces0.818182
infant0.772727
female0.227273
adult0.227273
18-month-old human stage0.181818
9-month-old human stage0.181818
15-month-old human stage0.181818
1-month-old human stage0.136364
LOWER IN 18-month-old human stage0.090909
LOWER IN 9-month-old human stage0.090909
oral cavity0.090909
vagina0.090909
meconium0.090909
newborn human stage0.090909
LOWER IN infant0.045455
LOWER IN 1-month-old human stage0.045455
LOWER IN female0.045455
LOWER IN adult0.045455
Number of experiments associating the term to the sequence
TermScore
female1.000000
adult1.000000
LOWER IN infant1.000000
LOWER IN 18-month-old human stage1.000000
feces1.000000
homo sapiens1.000000
nigeria1.000000
edo state1.000000
18-month-old human stage1.000000
LOWER IN 9-month-old human stage1.000000
infant1.000000
9-month-old human stage1.000000
LOWER IN 1-month-old human stage1.000000
LOWER IN female1.000000
LOWER IN adult1.000000
1-month-old human stage1.000000
oral cavity1.000000
15-month-old human stage1.000000
vagina1.000000
meconium1.000000
newborn human stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
960amnoncommon homo sapiens, female, vagina, adult, nigeria, edo state2022-12-20v41 / 7approvedNo
960amnoncommon feces, homo sapiens, infant, nigeria, meconium, edo state, newborn human stage2022-12-20v41 / 8approvedNo
960amnoncommon feces, homo sapiens, infant, nigeria, edo state, 1-month-old human stage2022-12-20v41 / 8approvedNo
960amnondominant feces, homo sapiens, infant, nigeria, meconium, edo state, newborn human stage2022-12-20v41 / 14approvedNo
960amnondominant homo sapiens, female, vagina, adult, nigeria, edo state2022-12-20v41 / 15approvedNo
960amnondominant feces, homo sapiens, infant, nigeria, edo state, 1-month-old human stage2022-12-20v41 / 15approvedNo
960amnondominant feces, homo sapiens, female, adult, nigeria, edo state2022-12-20v41 / 17approvedNo
960amnondominant homo sapiens, oral cavity, infant, nigeria, edo state, 15-month-old human stage2022-12-20v41 / 17approvedNo
960amnondominant feces, homo sapiens, infant, nigeria, edo state, 9-month-old human stage2022-12-20v41 / 22approvedNo
960amnondominant feces, homo sapiens, infant, nigeria, edo state, 15-month-old human stage2022-12-20v41 / 22approvedNo
960amnoncommon feces, homo sapiens, infant, nigeria, edo state, 9-month-old human stage2022-12-20v41 / 24approvedNo
960amnondominant feces, homo sapiens, infant, nigeria, edo state, 18-month-old human stage2022-12-20v41 / 24approvedNo
960amnoncommon feces, homo sapiens, infant, nigeria, edo state, 15-month-old human stage2022-12-20v41 / 30approvedNo
960amnoncommon homo sapiens, oral cavity, infant, nigeria, edo state, 15-month-old human stage2022-12-20v41 / 36approvedNo
960amnon high in 1-month-old human stage compared to 9-month-old human stage in feces homo sapiens infant nigeria edo state 2022-12-20v41 / 37approvedNo
960amnoncommon feces, homo sapiens, infant, nigeria, edo state, 18-month-old human stage2022-12-20v41 / 50approvedNo
960amnon high in 9-month-old human stage compared to 18-month-old human stage in feces homo sapiens infant nigeria edo state 2022-12-20v41 / 74approvedNo
960amnoncommon feces, homo sapiens, female, adult, nigeria, edo state2022-12-20v41 / 109approvedNo
960amnon high in infant 18-month-old human stage compared to female adult in feces homo sapiens nigeria edo state 2022-12-20v41 / 178approvedNo
960amnon high in 9-month-old human stage compared to 1-month-old human stage in feces homo sapiens infant nigeria edo state 2022-12-20v41 / 244approvedNo
960amnon high in 18-month-old human stage compared to 9-month-old human stage in feces homo sapiens infant nigeria edo state 2022-12-20v41 / 407approvedNo
960amnon high in female adult compared to infant 18-month-old human stage in feces homo sapiens nigeria edo state 2022-12-20v41 / 1392approvedNo

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