Experiment ID: 963

Field Description
namegrowth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome
sraprjna751585
doihttps://doi.org/10.1038/s42003-022-03239-6
mapmd550ea68857a2e84a6437f2934a4420567
datamd58dd477c333da6b86182667425db51a28

Annotations for experiment:

term enrichment score
TermScore
state of indiana1.000000
age 5 weeks0.424242
age 1 week0.222222
broiler chicken0.222222
age 3 weeks0.200000
LOWER IN age 3 weeks0.200000
male organism0.181818
LOWER IN avilamycin0.153846
LOWER IN virginiamycin0.153846
avilamycin0.153846
virginiamycin0.153846
LOWER IN age 5 weeks0.133333
LOWER IN age 1 week0.117647
chicken0.105263
gallus gallus0.100000
caecum0.046512
research facility0.012270
control0.010204
LOWER IN control0.010204
united states of america0.007692
Fraction of dbbact annotations with this term covered by the query
TermScore
state of indiana1.000000
LOWER IN avilamycin1.000000
LOWER IN virginiamycin1.000000
avilamycin1.000000
virginiamycin1.000000
age 5 weeks0.333333
LOWER IN age 5 weeks0.333333
age 3 weeks0.250000
LOWER IN age 3 weeks0.250000
LOWER IN age 1 week0.200000
age 1 week0.200000
broiler chicken0.125000
male organism0.100000
chicken0.055556
gallus gallus0.052632
caecum0.023810
research facility0.006173
control0.005263
LOWER IN control0.005263
united states of america0.003861
Fraction of annotations for the query sequences containing the term
TermScore
chicken1.000000
gallus gallus1.000000
caecum1.000000
research facility1.000000
male organism1.000000
broiler chicken1.000000
united states of america1.000000
state of indiana1.000000
age 5 weeks0.583333
age 1 week0.250000
age 3 weeks0.166667
LOWER IN age 3 weeks0.166667
control0.166667
LOWER IN control0.166667
LOWER IN age 1 week0.083333
LOWER IN age 5 weeks0.083333
LOWER IN avilamycin0.083333
LOWER IN virginiamycin0.083333
avilamycin0.083333
virginiamycin0.083333
Exp. ID User ID Description Date Region Flag Sequences
963amnon high in virginiamycin compared to control in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana age 5 weeks 2022-12-21v4No1 / 2
963amnon high in avilamycin compared to control in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana age 5 weeks 2022-12-21v4No1 / 5
963amnon high in control compared to virginiamycin in age 5 weeks state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-21v4No1 / 7
963amnondominant chicken, gallus gallus, caecum, research facility, male organism, broiler chicken, united states of america, state of indiana, age 5 weeks2022-12-21v4No1 / 19
963amnondominant chicken, gallus gallus, caecum, research facility, male organism, broiler chicken, united states of america, state of indiana, age 1 week2022-12-20v4No1 / 19
963amnon high in control compared to avilamycin in age 5 weeks state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-21v4No1 / 23
963amnon high in age 1 week compared to age 3 weeks in state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-20v4No1 / 36
963amnon high in age 3 weeks compared to age 5 weeks in state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-20v4No1 / 58
963amnoncommon age 1 week, state of indiana, united states of america, broiler chicken, male organism, research facility, caecum, gallus gallus, chicken2022-12-20v4No1 / 74
963amnon high in age 5 weeks compared to age 3 weeks in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana 2022-12-20v4No1 / 109
963amnoncommon age 5 weeks, state of indiana, united states of america, broiler chicken, male organism, research facility, caecum, gallus gallus, chicken2022-12-21v4No1 / 171
963amnon high in age 3 weeks compared to age 1 week in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana 2022-12-20v4No1 / 196

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