dbBact Experiment List

Exp. ID Name
2Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles, and gastrointestinal complaints
3bacillus as a potential diagnostic marker for yellow tongue coating
4the core gut microbiome of the american cockroach, periplaneta americana, is stable and resilient to dietary shifts
5the core gut microbiome of the american cockroach, periplaneta americana, is stable and resilient to dietary shifts
wild type samples
6urinary microbiota associated with preterm birth: results from the conditions affecting neurocognitive development and learning in early childhood (candle) study
7urinary microbiota associated with preterm birth: results from the conditions affecting neurocognitive development and learning in early childhood (candle) study
8pop mice
9multifaceted impacts of the stony coral porites astreoides on picoplankton abundance and community composition
association of host genome with intestinal microbial composition in a large healthy cohort
12reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome
13spatial heterogeneity of gut microbial composition along the gastrointestinal tract in natural populations of house mice
14mouse biopsies pilot
15oligotyping reveals differences between gut microbiomes of free-ranging sympatric namibian carnivores (acinonyx jubatus, canis mesomelas) on a bacterial species-like level
16the fecal microbiome in cats with diarrhea
17diet diversity and gut microbial diversity
18characterizing the gut microbiome of the last population of undomesticated horses living in the wild, the przewalski horse
19the treatment-naive microbiome in new-onset crohn’s disease
20american gut 6-2016
21strain diversity and host specificity in a specialized gut symbiont of honeybees and bumblebees
151comparison of master mix 2016
22compare bacteria in stool from hiv positive and negative
23human biopsies pilot
24rapid change of fecal microbiome and disappearance of clostridium difficile in a colonized infant after transition from breast milk to cow milk
25illumina miseq platform analysis caecum bacterial communities of rex rabbits fed with different antibiotics
26the shared microbiota of humans and companion animals as evaluated from staphylococcus carriage sites
27evaluation of composition and individual variability of rumen microbiota in yaks by 16s rrna high-throughput sequencing technology
28dining local: the microbial diet of a snail that grazes microbial communities is geographically structured
29emergence shapes the structure of the seed microbiota
30exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity
31samples of breast milk from a breast milk biorepository
32salivary microbiomes of indigenous tsimane mothers and infants are distinct despite frequent premastication
33the bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus
34bacterial communities in the rhizospheres of three mangrove tree species from beilun estuary, china
groups of pregnant women from tanzania were designated nourished, malnourished or overnourished. select participants were supplemented with probiotic yogurt and followed through pregnancy to parturition
55changes in the eye microbiota associated with contact lens wearing
36gut microbiota signatures of longevity
37using a control to better understand phyllosphere microbiota
38alterations of the human gut microbiome in multiple sclerosis
39influence of whole-wheat consumption on fecal microbial ecology of obese diabetic mice
115the influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon (coreius guichenoti, 1874)
372inflammation-induced iga+ cells dismantle anti-liver cancer immunity
40using community analysis to explore bacterial indicators for disease suppression of tobacco bacterial wilt
41amplicon sequencing of mice colonic microbiota
chronic psychological stress disrupted the composition of the murine colonic microbiota and accelerated a murine model of inflammatory bowel disease
42amplicon sequencing of mice colonic microbiota
chronic psychological stress disrupted the composition of the murine colonic microbiota and accelerated a murine model of inflammatory bowel disease
45longitudinal analysis of the intestinal microbiota in persistently stunted young children in south india
46the effect of antibiotic mediated gut microbiome perturbation on diabetes development in nod mice.
47lowry ptsd mice
to assess the effect of pre-immunizing with mycobacterium vaccae on a model of acute stress in mice
48the developing hypopharyngeal microbiota in early life
49shifts in the gut microbiome observed in wildlife faecal samples exposed to natural weather conditions: lessons from time-series analyses using next-generation sequencing for application in field studies
50symbiotic bacteria in gills and guts of chinese mitten crab (eriocheir sinensis) differ from the free-living bacteria in water
51hiv-associated gut microbiome
an altered intestinal mucosal microbiome in hiv-1 infection is associated with mucosal and systemic immune activation and endotoxemia
52characterization of the microbiome of nipple aspirate fluid of breast cancer survivors
53interconnected microbiomes and resistomes in low-income human habitats
54salivary gluten degradation and oral microbial profiles in health and celiac disease
95microbiome in the apical root canal system of teeth with post-treatment apical periodontitis
56from microhabitat of floral nectar up to biogeographic scale: novel insights on neutral and niche bacterial assemblies
57apis mellifera forager microbiome study
no apparent correlation between honey bee forager gut microbiota and honey production
58changes in the eye microbiota associated with contact lens wearing
59strain diversity and host specificity in a specialized gut symbiont of honeybees and bumblebees
60distinctive gut microbial community structure in both the wild and farmed swan goose
61the skin microbiome in allergen-induced canine atopic dermatitis
62differences in gut metabolites and microbial composition and functions between egyptian and u.s. children are consistent with their diets
63american gut
64preliminary analysis of salivary microbiome and their potential roles in oral lichen planus
65the gut microbiome of the sea urchin, lytechinus variegatus, from its natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles
66on the ecosystemic network of saliva in healthy young adults
67exploring the impact of post harvest processing on the microbiota and metabolite profiles during a case of green coffee bean production
68buchnera has changed flatmate but the repeated replacement of co-obligate symbionts is not associated with the ecological expansions of their aphid hosts
69composition and predicted metabolic capacity of upper and lower airway microbiota of healthy dogs in relation to the fecal microbiota
71physiological and microbial adjustments to diet quality permit facultative herbivory in an omnivorous lizard
72the association of specific constituents of the fecal microbiota with immune-mediated brain disease in dogs
73the distinct features of microbial ‘dysbiosis’ of crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred
74diet rapidly and reproducibly alters the human gut microbiome
75the microbiome of uncontacted amerindians
130the core microbiome bonds the alpine bog vegetation to a transkingdom metacommunity
76comparison of rhizome from seleniferus and non-seleniferous soils
77australian seaweed
78the role of social connectivity in gut microbial transmission and consequences for pathogen defense
79marine mammal skin microbiomes
116characterization of the intestinal microbiota in pacific white shrimp, litopenaeus vannamei, fed diets with different lipid sources
80phylogenetic and ecological factors impact the gut microbiota of two neotropical primate species
81community-level differences in the microbiome of healthy wild mallards and those infected by influenza a viruses
82methane production in dairy cows correlates with rumen methanogenic and bacterial community structure
83illumina miseq phylogenetic amplicon sequencing shows a large reduction of an uncharacterised succinivibrionaceae and an increase of the methanobrevibacter gottschalkii clade in feed restricted cattle
84identifying the microbial cohorts associated with drought-driven carbon release from peatland ecosystems.
85response of gut health and microbiota to sulfide exposure in pacific white shrimp litopenaeus vannamei
86bacterial topography of the healthy human lower respiratory tract
87bacterial topography of the healthy human lower respiratory tract
88characterization of fecal microbiome of cape buffalo
89social environment has a primary influence on the microbial and odor profiles of a chemically signaling songbird
90high-throughput sequencing of microbial community diversity and dynamics during douchi fermentation
91cultivation-independent comprehensive investigations on bacterial communitie in serofluid dish, a traditional chinese fermented food
92variations in airborne bacterial communities at high altitudes over the noto peninsula (japan) in response to asian dust events
93symbiotic bacteria associated with a bobtail squid reproductive system are detectable in the environment, and stable in the host and developing eggs
94dynamics of the fecal microbiome in patients with recurrent and nonrecurrent clostridium difficile infection
96subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status
97deep characterization of the microbiomes of calophya spp. (hemiptera: calophyidae) gall-inducing psyllids reveals the absence of plant pathogenic bacteria and three dominant endosymbionts
98defining the core citrus leaf- and root-associated microbiota: factors associated with community structure and implications for managing huanglongbing (citrus greening) disease
99most of the dominant members of amphibian skin bacterial communities can be readily cultured
100biogeographic patterns in below-ground diversity in new york city's central park are similar to those observed globally
101the soil microbiome influences grapevine-associated microbiota
102oral microbiome in hiv-associated periodontitis
103patterns of variation in diversity of the mississippi river microbiome over 1,300 kilometers
104identification of key components of the healthy periodontium microbiome that protect against aggressive periodontitis by metagenomic sequencing
105microbiome of deep dentinal caries lesions in teeth with symptomatic irreversible pulpitis
106clustering of subgingival microbiota reveals microbial disease ecotypes associated with clinical stages of periodontitis in a cross-sectional study
107unique and shared responses of the gut microbiota to prolonged fasting: a comparative study across five classes of vertebrate hosts
108unique and shared responses of the gut microbiota to prolonged fasting: a comparative study across five classes of vertebrate hosts
109impact of water chemistry, pipe material and stagnation on the building plumbing microbiome
110the impact of sampling, pcr, and sequencing replication on discerning changes in drinking water bacterial community over diurnal time-scales
111microbial community compositions in the gastrointestinal tract of chinese mongolian sheep using illumina miseq sequencing revealed high microbial diversity
112influence of endogenous and exogenous estrogenic endocrine on intestinal microbiota in zebrafish
113the role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish
114larval exposure to polychlorinated biphenyl 126 (pcb-126) causes persistent alteration of the amphibian gut microbiota
117the enteric nervous system promotes intestinal health by constraining microbiota composition
118metamorphosis of a butterfly-associated bacterial community
119chronic trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of lactobacilli
120enterotype may drive the dietary-associated cardiometabolic risk factors
121members of the human gut microbiota involved in recovery from vibrio cholerae infection
122genetic determinants of the gut microbiome in uk twins
123the antipsychotic olanzapine interacts with the gut microbiome to cause weight gain in mouse
124akkermansia muciniphila mediates negative effects of ifnγ on glucose metabolism
125host genotype and gut microbiome modulate insulin secretion and diet-induced metabolic phenotypes
126barley rhizosphere 16s
response of the rhizosphere prokaryotic community of barley (hordeum vulgare l.) to elevated atmospheric co2 concentration in open-top chambers
127development of the chick microbiome: how early exposure influences future microbial diversity
128impact of urban land use on the bacterial phyllosphere of ivy (hedera sp.)
129the cacti microbiome: interplay between habitat-filtering and host-specificity
131the effect of heritability and host genetics on the gut microbiota and metabolic syndrome
132alterations of the human gut microbiome in multiple sclerosis
133the infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development
134unearthing microbial diversity of taxus rhizosphere via miseq high-throughput amplicon sequencing and isolate characterization
135tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming
136microbial diversity within the trichodesmium holobiont
137kinship, inbreeding and fine-scale spatial structure influence gut microbiota in a hindgut-fermenting tortoise
138polymetallic nodules, sediments, and deep waters in the equatorial north pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities
139polymetallic nodules, sediments, and deep waters in the equatorial north pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities
140microbial community composition and diversity in caspian sea sediments
141microbial community composition and diversity in caspian sea sediments
142biogeochemical and microbial variation across 5500 km of antarctic surface sediment implicates organic matter as a driver of benthic community structure
143pcr mastermix test
knight lab
144differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with giardia duodenalis infection: impact of hookworms and coccidia
145water management impacts rice methylmercury and the soil microbiome
146solanum lycopersicum (tomato) hosts robust phyllosphere and rhizosphere bacterial communities when grown in soil amended with various organic and synthetic fertilizers
147high diversity of planctomycetes in soils of two lichen-dominated sub-arctic ecosystems of northwestern siberia
183by their own devices: invasive argentine ants have shifted diet without clear aid from symbiotic microbes
255ontogenetic characterization of the intestinal microbiota of channel catfish through 16s rrna gene sequencing reveals insights on temporal shifts and the influence of environmental microbes
148well to well contamination
149amphibian gut microbiota shifts differentially in community structure but converges on habitatspecific predicted functions
150the fecal microbiome of dogs with exocrine pancreatic insufficiency
152dust and nose
154effects of uranium concentration on microbial community structure and functional potential
155rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields
156application of struvite alters the antibiotic resistome in soil, rhizosphere, and phyllosphere
157weaned beef calves fed selenium-biofortified alfalfa hay have an enriched nasal microbiota compared with healthy controls
158the feline skin microbiota: the bacteria inhabiting the skin of healthy and allergic cats
159microbiome patterns across the gastrointestinal tract of the rabbitfish siganus fuscescens
160unravelling riverine microbial communities under wastewater treatment plant effluent discharge in large urban areas
161stress response, gut microbial diversity and sexual signals correlate with social interactions
162multi-omics analysis of periodontal pocket microbial communities pre- and posttreatment
163ost species shapes the co-occurrence patterns rather than diversity of stomach bacterial communities in pikas
164bacterial microbiota in small brown planthopper populations with different rice viruses
165the gut microbiota in larvae of the housefly musca domestica and their horizontal transfer through feeding
166effect of freshwater mussels on the vertical distribution of anaerobic ammonia oxidizers and other nitrogen- transforming microorganisms in upper mississippi river sediment
167a bidirectional association between the gut microbiota and cns disease in a biphasic murine model of multiple sclerosis
168the functional potential and active populations of the pit mud microbiome for the production of chinese strong-flavour liquor
169characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course
170microbial community structure and function decoupling across a phosphorus gradient in streams
171drought stress results in a compartment-specific restructuring of the rice root-associated microbiomes
172burkholderia of plant-beneficial group are symbiotically associated with bordered plant bugs (heteroptera: pyrrhocoroidea: largidae)
173the salivary microbiome as an indicator of carcinogenesis in patients with oropharyngeal squamous cell carcinoma: a pilot study
174spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence
175understanding the variation of microbial community in heavy metals contaminated soil using high throughput sequencing
176topical antimicrobial treatments can elicit shifts to resident skin bacterial communities and reduce colonization by staphylococcus aureus competitors
177comparison of collection methods for fecal samples in microbiome studies
178hotspots for selected metal elements and microbes accumulation and the corresponding water quality deterioration potential in an unchlorinated drinking water distribution system
179fluoride depletes acidogenic taxa in oral but not gut microbial communities in mice
180comparison of microbiomes between red poultry mite populations (dermanyssus gallinae): predominance of bartonella-like bacteria
181colony contact contributes to the diversity of gut bacteria in bumblebees (bombus terrestris)
182by their own devices: invasive argentine ants have shifted diet without clear aid from symbiotic microbes
184dramatic differences in gut bacterial densities correlate with diet and habitat in rainforest ants
185gut microbiome predictors of treatment response and recurrence in primary clostridium difficile infection
186alteration of the rat cecal microbiome during colonization with the helminth hymenolepis diminuta
187a benign helminth alters the host immune system and the gut microbiota in a rat model system
188chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome
189microbial landscape of the grapevine endosphere in the context of pierce’s disease
190seasonal cycling in the gut microbiome of the hadza hunter-gatherers of tanzania
191replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of us women
192the structure of the brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens
193the nasal microbiota of dairy farmers is more complex than oral microbiota, reflects occupational exposure, and provides competition for staphylococci
194linking spatial structure and community-level biotic interactions through cooccurrence and time series modeling of the human intestinal microbiota
195urban transit system microbial communities differ by surface type and interaction with humans and the environment
196impact of water heater temperature setting and water use frequency on the building plumbing microbiome
197a cross-sectional comparative study of gut bacterial community of indian and finnish children
198ecological differentiation in planktonic and sediment-associated chemotrophic microbial populations in yellowstone hot springs
199microbes and associated soluble and volatile chemicals on periodically wet household surfaces
200wastewater treatment plant effluent introduces recoverable shifts in microbial community composition in receiving streams
201a distinctive and host-restricted gut microbiota in populations of a cactophilic drosophila species
254strong impact of anthropogenic contamination on the co-occurrence patterns of a riverine microbial community
202variations in oral microbiota associated with oral cancer
203host genetic control of the oral microbiome in health and disease
204spatiotemporal variation of bacterial and archaeal communities in sediments of a drinking reservoir, beijing, china
205novel microbial assemblages dominate weathered sulfide-bearing rock from copper-nickel deposits in the duluth complex, minnesota, usa
334interleukin 1α-deficient mice have an altered gut microbiota leading to protection from dextran sodium sulfate-induced colitis
505pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom
206origin-dependent variations in the atmospheric microbiome community in eastern mediterranean dust storms
207fecal microbial characterization of hospitalized patients with suspected infectious diarrhea shows significant dysbiosis
208mitigation of colitis with novasil clay therapy
209extensive core microbiome in drone-captured whale blow supports a framework for health monitoring
210regulators of gut motility revealed by a gnotobiotic model of diet-microbiome interactions related to travel
211genetic and environmental control of host-gut microbiota interactions
212molecular exploration of fecal microbiome in quinoa-supplemented obese mice
213microbial composition predicts genital tract inflammation and persistent bacterial vaginosis in adolescent south african women
214interactions between gut microbiota, host genetics and diet in the development of metabolic syndrome
215distinctive microbiomes and metabolites linked with weight loss after gastric bypass, but not gastric banding
216effects of subchronic oral toxic metal exposure on the intestinal microbiota of mice
217aging and serum mcp-1 are associated with gut microbiome composition in a murine model
218effect of milk and milk containing lactobacillus casei on the intestinal microbiota of mice
219modeling environmental risk factors of autism in mice induces ibd-related gut microbial dysbiosis and hyperserotonemia
220dietary perturbations alter the ecological significance of ingested lactobacillus plantarum in the digestive tract
221modulation of gut microbiome composition and function in experimental colitis treated with sulfasalazine
22216s rrna gene profiling of planktonic and biofilm microbial populations in the gulf of guinea using illumina ngs
223regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern zhejiang, east china sea
224primary productivity of snow algae communities on stratovolcanoes of the pacific northwest
225impact of age-related mitochondrial dysfunction and exercise on intestinal microbiota composition
226cyanobacterial harmful algal blooms are a biological disturbance to western lake erie bacterial communities
227maturation of the infant respiratory microbiota, environmental drivers and health consequences: a prospective cohort study
228compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences
229bacterial communities vary between sinuses in chronic rhinosinusitis patients
230three distinct pneumotypes characterize the microbiome of the lung in balb/cj mice
231characterization of the urinary microbiome in healthy dogs
232a longitudinal study of the diabetic skin and wound microbiome
233early life dynamics of the human gut virome and bacterial microbiome in infants
234spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography
235global-scale structure of the eelgrass microbiome
236microbial communities in sediment from zostera marina patches, but not the z. marina leaf or root microbiomes, vary in relation to distance from patch edge
237morphological and genetic factors shape the microbiome of a seabird species (oceanodroma leucorhoa) more than environmental and social factors
238metformin is associated with higher relative abundance of mucin-degrading akkermansia muciniphila and several short-chain fatty acid producing microbiota in the gut
239the human gut microbiome as a screening tool for colorectal cancer
240the dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.
241 variation in microbiome lps immunogenicity contributes to autoimmunity in humans
242gut microbiome diversity among cheyenne and arapaho individuals from western oklahoma
243within gut physicochemical variation does not correspond to distinct resident fungal and bacterial communities in the tree-killing xylophage, anoplophora glabripennis
244gut microbiomes and reproductive isolation in drosophila
245distinct patterns in human milk microbiota and fatty acid profiles across specific geographic locations
246saliva from obese individuals suppresses the release of aroma compounds from wine
247whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber
248salt-responsive gut commensal modulates th17 axis and disease
249gut bacteria from multiple sclerosis patients modulate human t cells and exacerbate symptoms in mouse models
250fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils
251exploring fungal diversity in deep-sea sediments from okinawa trough using high-throughput illumina sequencing
252wastewater pollution differently affects the antibiotic resistance gene pool and biofilm bacterial communities across streambed compartments
253active microorganisms thrive among extremely diverse communities in cloud water
256composition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences
257characterizing bacterial communities in tilapia pond surface sediment and their responses to pond differences and temporal variations
258immune response and mortality risk relate to distinct lung microbiomes in hivpneumonia patients
296spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the north china plain
259organic amendments shift the phosphorus-correlated microbial cooccurrence pattern in the peanut rhizosphere network during long-term fertilization regimes
260subgingival microbiome colonization and cytokine production during early dental implant healing
261dietary energy drives the dynamic response of bovine rumen viral communities
262modulation of the tick gut milieu by a secreted tick protein favors borrelia burgdorferi colonization
263quality of irrigation water affects soil functionality and bacterial community stability to heat disturbance
264impacts of diarrhea on the immune system, intestinal environment, and expression of pgrps in new zealand rabbits
265identifying the core seed bank of a complex boreal bacterial metacommunity
266host genotype and age shape the leaf and root microbiomes of a wild perennial plant
267effect of dietary probiotic supplementation on intestinal microbiota and physiological conditions of nile tilapia (oreochromis niloticus) under waterborne cadmium exposure
268a single vibrionales 16s rrna oligotype dominates the intestinal microbiome in two geographically separated atlantic cod populations
269characterization of a microbial community developing during refrigerated storage of vacuum packed yao meat, a chinese traditional food
270agelas wasting syndrome alters prokaryotic symbiont communities of the caribbean brown tube sponge, agelas tubulata
271co-occurrence patterns of soybean rhizosphere microbiome at a continental scale
272oral microbiota: microbial biomarkers of metabolic syndrome independent of host genetic factors
273maturation of the gut microbiome and risk of asthma in childhood
274ecological plasticity in the gastrointestinal microbiomes of ethiopian chlorocebus monkeys
275temporal and regional variability in the skin microbiome of humpback whales along the western antarctic peninsula
276subsistence strategies in traditional societies distinguish gut microbiomes
277comparing the healthy nose and nasopharynx microbiota reveals continuity as well as niche-specificity
278oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy
279gut region influences the diversity and interactions of bacterial communities in pikas (ochotona curzoniae and ochotona daurica)
280the gorgonian coral eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation
281diets alter the gut microbiome of crocodile lizards
282tide as steering factor in structuring archaeal and bacterial ammonia-oxidizing communities in mangrove forest soils dominated by avicennia germinans and rhizophora mangle
283pycnoscelus surinamensis cockroach gut microbiota respond consistently to a fungal diet without mirroring those of fungus-farming termites
284household triclosan and triclocarban effects on the infant and maternal microbiome
285relationship of the middle ear effusion microbiome to secretory mucin production in pediatric patients with chronic otitis media
28616s rrna gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones
287long-range transported bioaerosols captured in snow cover on mount tateyama, japan: impacts of asian-dust events on airborne bacterial dynamics relating to ice-nucleation activities
288characterization of the juvenile green turtle (chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats
289variable responses of human microbiomes to dietary supplementation with resistant starch
290recent urbanization in china is correlated with a westernized microbiome encoding increased virulence and antibiotic resistance genes
291bacterial microbiome of the nose of healthy dogs and dogs with nasal disease
292gut microbiota offers universal biomarkers across ethnicity in inflammatory bowel disease diagnosis and infliximab response prediction
293prior dietary practices and connections to a human gut microbial metacommunity alter responses to diet interventions
294reduction of butyrate- and methane-producing microorganisms in patients with irritable bowel syndrome
295plant genotype-specific archaeal and bacterial endophytes but similar bacillus antagonists colonize mediterranean olive trees
297dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease
298bacteria increase arid-land soil surface temperature through the production of sunscreens
299bacterial alterations in salivary microbiota and their association in oral cancer
300physical activity differentially affects the cecal microbiota of ovariectomized female rats selectively bred for high and low aerobic capacity
301variation of the microbiota and metabolome along the canine gastrointestinal tract
302comprehensive molecular characterization of bacterial communities in feces of pet birds using 16s marker sequencing
303high intake of orange juice and cola differently affects metabolic risk in healthy subjects
304microbial community structure of sea spray aerosols at three california beaches.
305bacterial community changes in an industrial algae production system
306microbiome dynamics during ensiling of corn with and without lactobacillus plantarum inoculant
307experimental chagas disease-induced perturbations of the fecal microbiome and metabolome
308katharoseq enables high-throughput microbiome analysis from low-biomass samples
309rhizosphere bacterial community composition depends on plant diversity legacy in soil and plant species identity
310gut microbial diversity in women with polycystic ovary syndrome correlates with hyperandrogenism
311the impact of vegan production on the kimchi microbiome
312microbiota composition may predict anti-tnf alpha response in spondyloarthritis patients: an exploratory study
313dietary live yeast and increased water temperature influence the gut microbiota of rainbow trout
314the significance of the diversity and composition of the cecal microbiota of the tibetan swine
315opportunistic pathogens are abundant in the gut of cultured giant spiny frog (paa spinosa)
316evidence of ash tree (fraxinus spp.) specific associations with soil bacterial community structure and functional capacity
317primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16s rrna gene amplicon analysis of coastal marine bacterioplankton
318incubation with macroalgae induces large shifts in water column microbiota, but minor changes to the epibiota of co-occurring macroalgae
319investigating colonization of the healthy adult gastrointestinal tract by fungi
320fecal microbiota signatures are associated with response to ustekinumab therapy among crohn’s disease patients
321oral antibiotic treatment of mice exacerbates the disease severity of multiple flavivirus infections
322early-life diet affects host microbiota and later-life defenses against parasites in frogs
323microbial community richness distinguishes shark species microbiomes in south florida
324the influence of diet and environment on the gut microbial community of field crickets
325microbiota-accessible carbohydrates suppress clostridium difficile infection in a murine model
326obese mice losing weight due to trans-10,cis-12 conjugated linoleic acid supplementation or food restriction harbor distinct gut microbiota
327injectable antimicrobials in commercial feedlot cattle and their effect on the nasopharyngeal microbiota and antimicrobial resistance
328changes in mouse gut bacterial community in response to different types of drinking water
329multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
330multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
331multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
332influence of the intestinal microbiota on the immunogenicity of oral rotavirus vaccine given to infants in south india
333dysbiosis of gut microbiota with reduced trimethylamine-n-oxide level in patients with large-artery atherosclerotic stroke or transient ischemic attack
335features of the bronchial bacterial microbiome associated with atopy, asthma, and responsiveness to inhaled corticosteroid treatment
336comparative analyses of the gut microbiota among three different wild geese species in the genus anser
337new york city house mice (mus musculus) as potential reservoirs for pathogenic bacteria and antimicrobial resistance determinants
338cutaneous microbiota of the japanese giant salamander (andrias japonicus), a representative of an ancient amphibian clade
339changes in the intestinal microbiota following the administration of azithromycin in a randomised placebo-controlled trial among infants in south india
340faecal microbiota of cats with insulin-treated diabetes mellitus
341drinking water microbiome assembly induced by water stagnation
342diversity and community structure of marine microbes around the benham rise underwater plateau, northeastern philippines
343the influence of flower anatomy and apple cultivar on the apple flower phytobiome
344fecal microbiota composition drives immune activation in hiv-infected individuals
345the nasal microbiome mirrors and potentially shapes olfactory function
346instar- and host-associated differentiation of bacterial communities in the mediterranean fruit fly ceratitis capitata
347disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
348the short-term impact of probiotic consumption on the oral cavity microbiome
349beneficial changes of gut microbiota and metabolism in weaned rats with lactobacillus acidophilus ncfm and bifidobacterium lactis bi-07 supplementation
350the microbial reproductive ecology of white-faced capuchins (cebus capucinus)
351ocean warming alters predicted microbiome functionality in a common sea urchin
352comparison of small gut and whole gut microbiota of first-degree relatives with adult patients with celiac disease and controls
353captivity and exposure to the emerging fungal pathogen batrachochytrium salamandrivorans are linked to perturbation and dysbiosis of the amphibian skin microbiome
354bacterial biogeography of adult airways in atopic asthma
355alternate life history phases of a common seaweed have distinct microbial surface communities
356high soil microbial activity in the winter season enhances nitrogen cycling in a cool-temperate deciduous forest
357structure and function of the global topsoil microbiome
358the benign helminth hymenolepis diminuta ameliorates chemically induced colitis in a rat model system
359diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest
360plant compartment and biogeography affect microbiome composition in cultivated and native agave species
361the plant is crucial: specific composition and function of the phyllosphere microbiome of indoor ornamentals
362microbial community diferentiation between active and inactive sulfde chimneys of the kolumbo submarine volcano, hellenic volcanic arc
363multi-omic biogeography of the gastrointestinal microbiota of a pre-weaned lamb
364diversity and metabolic potential of the microbiota associated with a soil arthropod
365the bacteriome at the onset of type 1 diabetes: a study from four geographically distant african and asian countries
366the nile river microbiome reveals a remarkably stable community between wet and dry seasons, and sampling sites, in a large urban metropolis (cairo, egypt)
367the biology of fog: results from coastal maine and namib desert reveal common drivers of fog microbial composition
368gut microbiota in human sle and a mouse model of lupus
369functional gut microbiota remodeling contributes to the caloric restriction-induced metabolic improvements
370variations in the structure of airborne bacterial communities in tsogt-ovoo of gobi desert area during dust events
371changes in the gut microbiota of urban subjects during an immersion in the traditional diet and lifestyle of a rainforest village
373distinct rhizosphere effect on active and total bacterial communities in paddy soils
374assessment of bacterial communities associated with the skin of costa rican amphibians at la selva biological station
375metagenomic analysis of rhizosphere microflora of oil-contaminated soil planted with barley and alfalfa
376salt marsh sediment bacterial communities maintain original population structure after transplantation across a latitudinal gradient
377disruption of skin microbiota contributes to salamander disease
378do different probing depths exhibit striking differences in microbial profiles?
379the effect of the timing of exposure to campylobacter jejuni on the gut microbiome and inflammatory responses of broiler chickens
380correlations between gut microbiota community structures of tibetans and geography
381glucocorticoids modulate gastrointestinal microbiome in a wild bird
382temperature-controlled thermophilic bacterial communities in hot springs of western sichuan, china
383ketogenic diet enhances neurovascular function with altered gut microbiome in young healthy mice
384lung microbiome is influenced by the environment and asthmatic status in an equine model of asthma
385post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous fmt
personalized gut mucosal colonization resistance to empiric probiotics is associated with unique host and microbiome features
386altitudinal variation of the gut microbiota in wild house mice
387the gut microbiota modulates energy metabolism in the hibernating brown bear ursus arctos
388development of the tonsil microbiome in pigs and effects of stress on the microbiome
389development of the tonsillar microbiome in pigs from newborn through weaning
390gut microbiome analysis identifies potential aetiological factors in acute gastroenteritis
391vitamin a deficiency impacts the structural segregation of gut microbiota in children with persistent diarrhea
392high-throughput sequencing of gut microbiota in rainbow trout (oncorhynchus mykiss) fed larval and pre-pupae stages of black soldier fly (hermetia illucens)
393an exploration of prevotella-rich microbiomes in hiv and men who have sex with men
394disease severity and immune activity relate to distinct interkingdom gut microbiome states in ethnically distinct ulcerative colitis patients
395safety, clinical response, and microbiome findings following fecal microbiota transplant in children with inflammatory bowel disease
396host selectively contributes to shaping intestinal microbiota of carnivorous and omnivorous fish
397the evolution of abdominal microbiomes in fungus growing ants
398quantitative microbiome profiling links gut community variation to microbial load
399gut microbiota density influences host physiology and is shaped by host and microbial factors
400us immigration westernizes the human gut microbiome
401endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota
402bacterial survival strategies in an alkaline tailing site and the physiological mechanisms of dominant phylotypes as revealed by metagenomic analyses
403a long-term survey unveils strong seasonal patterns in the airborne microbiome coupled to general and regional atmospheric circulations
404gut microbiota is associated with obesity and cardiometabolic disease in a population in the midst of westernization
405the gut microbiota mediates the anti-seizure effects of the ketogenic diet
406the effects of captivity on the mammalian gut microbiome
407seasonality of the gut microbiota of free-ranging white-faced capuchins in a tropical dry forest
408dietary specialization in mutualistic acacia-ants affects relative abundance but not identity of host-associated bacteria
409spatial variation of the native colon microbiota in healthy adults
410compositional and temporal changes in the gut microbiome of pediatric ulcerative colitis patients are linked to disease course
411characterization of wild and captive baboon gut microbiota and their antibiotic resistomes
412long-term effects of manure and chemical fertilizers on soil antibiotic resistome
413intermittent hypoxia and hypercapnia, a hallmark of obstructive sleep apnea, alters the gut microbiome and metabolome
414contrasting responses of bacterial and fungal communities to aggregate-size fractions and long-term fertilizations in soils of northeastern china
415the structure and function of the global citrus rhizosphere microbiome
416low-abundant bacteria drive compositional changes in the gut microbiota after dietary alteration
417habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved
418coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
419zengye decoction induces alterations to metabolically active gut microbiota in aged constipated rats
420organic farming improves soil microbial abundance and diversity under greenhouse condition: a case study in shanghai (eastern china)
421effects of cd, cu, zn and their combined action on microbial biomass and bacterial community structure
422the chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales
423skin and gut microbiomes of a wild mammal respond to different environmental cues
424core gut microbiota in jinhua pigs and its correlation with strain, farm and weaning age
425stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa
426prokaryotic community shifts during soil formation on sands in the tundra zone
427environmental temperature alters the digestive performance and gut microbiota of a terrestrial amphibian
428gut microbiota dysbiosis worsens the severity of acute pancreatitis in patients and mice
429a high salt diet modulates the gut microbiota and short chain fatty acids production in a salt-sensitive hypertension rat model
430diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study
449a lachnospiraceae-dominated bacterial signature in the fecal microbiota of hiv-infected individuals from colombia, south america
431hibernation leads to altered gut communities in bumblebee queens (bombus terrestris)
432exploring variation in phyllosphere microbial communities across four hemlock species
433spatial variations of prokaryotic communities in surface water from india ocean to chinese marginal seas and their underlining environmental determinants
434rescue of fructose-induced metabolic syndrome by antibiotics or faecal transplantation in a rat model of obesity
435marginal zinc deficiency and environmentally relevant concentrations of arsenic elicit combined effects on the gut microbiome
436the fecal microbiome and serum concentrations of indoxyl sulfate and p‐cresol sulfate in cats with chronic kidney disease
437interhost dispersal alters microbiome assembly and can overwhelm host innate immunity in an experimental zebrafish model
438the gut microbiota of healthy aged chinese is similar to that of the healthy young
439microbial diversity in the rumen, reticulum, omasum, and abomasum of yak on a rapid fattening regime in an agro-pastoral transition zone
440the gut of the finch: uniqueness of the gut microbiome of the galápagos vampire finch
441nonsteroidal anti-inflammatory drugs alter the microbiota and exacerbate clostridium difficile colitis while dysregulating the inflammatory response.
442compound polysaccharides ameliorate experimental colitis by modulating gut microbiota composition and function
443nutrient dynamics and stream order influence microbial community patterns along a 2914 kilometer transect of the mississippi river
444contrasting beneficial and pathogenic microbial communities across consecutive cropping fields of greenhouse strawberry
445ecological and molecular characterization of a coral black band disease outbreak in the red sea during a bleaching event
446dysbiosis and early mortality in zebrafish larvae exposed to subclinical concentrations of streptomycin
447intermittent fasting promotes white adipose browning and decreases obesity by shaping the gut microbiota
448exploration of the fecal microbiota and biomarker discovery in equine grass sickness
450mississippi river plume enriches microbial diversity in the northern gulf of mexico
451metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional chinese fermented food
452conversion from long-term cultivated wheat field to jerusalem artichoke plantation changed soil fungal communities
453foliar microbiome transplants confer disease resistance in a critically-endangered plant
454père david deer gut microbiome changes across captive and translocated populations: implications for conservation
455data on the gut and saliva microbiota from a cohort of atherosclerosis patients determined by 16s rrna gene sequencing
456the lung microbiota of healthy mice are highly variable, cluster by environment, and reflect variation in baseline lung innate immunity
457polydextrose changes the gut microbiome and attenuates fasting triglyceride and cholesterol levels in western diet fed mice
458effects of vendor and genetic background on the composition of the fecal microbiota of inbred mice
459freshwater recirculating aquaculture system operations drive biofilter bacterial community shifts around a stable nitrifying consortium of ammonia-oxidizing archaea and comammox nitrospira
460chamber bioaerosol study: outdoor air and human occupants as sources of indoor airborne microbes
461microbial interactions lead to rapid micro-scale successions on model marine particles
462the populus holobiont: dissecting the effects of plant niches and genotype on the microbiome
463dietary lipid levels could improve growth and intestinal microbiota of juvenile swimming crab, portunus trituberculatus
464scattered far and wide: a broadly distributed temperate dune grass finds familiar fungal root associates in its invasive range
465drought stress results in a compartment-specific restructuring of the rice root-associated microbiomes
466rapid microbiome changes in freshly deposited cow feces under field conditions
467effects of arabinoxylan and resistant starch on intestinal microbiota and short-chain fatty acids in subjects with metabolic syndrome: a randomised crossover study
468the temporal dynamics of the tracheal microbiome in tracheostomised patients with and without lower respiratory infections
487impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions
469lung microbiome and host immune tone in subjects with idiopathic pulmonary fibrosis treated with inhaled interferon-γ
470reduction of salmonella shedding by sows during gestation in relation to its fecal microbiome
471do host-associated gut microbiota mediate the effect of an herbicide on disease risk in frogs?
472heterogeneity of methane seep biomes in the northeast pacific
473differential co-occurrence relationships shaping ecotype diversification within thaumarchaeota populations in the coastal ocean water column
474direct and indirect effects of a ph gradient bring insights into the mechanisms driving prokaryotic community structures
475indoor-air microbiome in an urban subway network: diversity and dynamics
476fluoxetine-induced alteration of murine gut microbial community structure: evidence for a microbial endocrinology-based mechanism of action responsible for fluoxetine-induced side effects
477gut microbiome transition across a lifestyle gradient in himalaya
478comparative analysis of the bacterial community compositions of the shrimp intestine, surrounding water and sediment
479the influence of the host plant is the major ecological determinant of soil presence of the nitrogen-fixing root nodule symbiont, cluster ii frankia
480phylogenetic and functional potential links ph and n2o emissions in pasture soils
481bacillus velezensis ap193 exerts probiotic effects in channel catfish (ictalurus punctatus) and reduces aquaculture pond eutrophication
482intestinal parasitic infection alters bacterial gut microbiota in children
483microbiomes of the polychaete hydroides elegans (polychaeta: serpulidae) across its life-history stages
484dynamics of human gut microbiota and short-chain fatty acids in response to dietary interventions with three fermentable fibers
485distribution, community composition and potential metabolic activity of bacterioplankton in an urbanized mediterranean sea coastal zone
486methane seep carbonates host distinct, diverse, and dynamic microbial assemblages
488faecal microbiota in dogs with multicentric lymphoma
489is there a link between aging and microbiome diversity in exceptional mammalian longevity?
490amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
491linseed oil supplementation of lambs’ diet in early life leads to persistent changes in rumen microbiome structure
492community richness of amphibian skin bacteria correlates with bioclimate at the global scale
493comparison of the oral microbiome in mouthwash and whole saliva samples
494bifidobacteria or fiber protects against dietinduced microbiota-mediated colonic mucus deterioration
49516s rrna amplicon sequencing characterization of caecal microbiome composition of broilers and free-range slow-growing chickens throughout their productive lifespan
496a compendium of multi-omic sequence information from the saanich inlet water column
497fecal microbiota transplant from highly feed efficient donors shows little effects on age-related changes in feed efficiency-associated fecal microbiota in chickens
498the intestinal microbiota of tadpoles differs from those of syntopic aquatic invertebrates
499the intestinal microbiota of tadpoles differs from those of syntopic aquatic invertebrates
500deep ocean prokaryotic communities are remarkably malleable when facing long-term starvation
501structure and function of the bacterial and fungal gut microbiota of neotropical butterflies
502gut microbiome differences between patients with schizophrenia and healthy subjects i
503plasmodium berghei anka causes intestinal malaria associated with dysbiosis
504large-scale seaweed cultivation diverges water and sediment microbial communities in the coast of nan'ao island, south china sea
506shifts in soil bacterial and archaeal communities during freeze-thaw cycles in a seasonal frozen marsh, northeast china
507the bacterial community of quesnel lake sediments impacted by a catastrophic mine tailings spill differ in composition from those at undisturbed locations – two years post-spill
508molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes
509urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in nigerian adolescents
510unraveling the environmental and anthropogenic drivers of bacterial community changes in the estuary of bilbao and its tributaries
511microbial ecology of snow reveals taxa-specific biogeographical structure
512structural and functional differentiation of the microbial community in the surface and subsurface peat of two minerotrophic fens in china
513occurrence and diversity of antibiotic resistance in untreated hospital wastewater
514core bacterial community composition of a cryptoendolithic ecosystem in the grand staircase-escalante national monument, utah
515how hosts taxonomy, trophy, and endosymbionts shape microbiome diversity in beetles
516defining dysbiosis in patients with urolithiasis
517the fecal, oral, and skin microbiota of children with chagas disease treated with benznidazole
518beef cattle fecal microbiota response to toxic tall fescue grazing
519the oral microbiome in the elderly with dental caries and health
520alterations of gastric mucosal microbiota across different stomach microhabitats in a cohort of 276 patients with gastric cancer
521the maturing development of gut microbiota in commercial piglets during the weaning transition
522intestinal barrier function and the gut microbiome are differentially affected in mice fed a western-style diet or drinking water supplemented with fructose
523concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the chicago area
524salivary mycobiome dysbiosis and its potential impact on bacteriome shifts and host immunity in oral lichen planus
525ground beef microbiome changes with antimicrobial decontamination interventions and product storage
526the human gallbladder microbiome is related to the physiological state and the biliary metabolic profile
527biogeography of soil bacterial populations in the jutulsessen and ahlmannryggen of western dronning maud land, antarctica
528racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
529the long term microbiota and metabolic status in patients with colorectal cancer after curative colon surgery
530comparative analysis and characterization of the gut microbiota of four farmed snakes from southern china
531hiseq base molecular characterization of soil microbial community, diversity structure, and predictive functional profiling in continuous cucumber planted soil affected by diverse cropping systems in an intensive greenhouse region of northern china
532microbiome and metabolome profiles associated with different types of short bowel syndrome: implications for treatment
533the association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in fiji
534bacterial community composition and diversity in koshi river, the largest river of nepal
535deciphering the complex interplay between microbiota, hpv, inflammation and cancer through cervicovaginal metabolic profiling
536variability in snake skin microbial assemblages across spatial scales and disease states
537effects of the captive and wild environment on diversity of the gut microbiome of deer mice (peromyscus maniculatus)
538comparison of co-housing and littermate methods for microbiota standardization in mouse models
539fermentation of enset (ensete ventricosum) in the gamo highlands of ethiopia: physicochemical and microbial community dynamics
540domestic canines do not display evidence of gut microbial dysbiosis in the presence of clostridioides (clostridium) difficile, despite cellular susceptibility to its toxins
541the koala (phascolarctos cinereus) faecal microbiome differs with diet in a wild population
542microbiome profiles of ligature-induced periodontitis in nonhuman primates across the lifespan
543snow algae communities in antarctica–metabolic and taxonomic composition
54416s rrna amplicon profiling of cranberry (vaccinium macrocarpon ait.) flower and berry surfaces
545deep-sea anthropogenic macrodebris harbours rich and diverse communities of bacteria and archaea
546oxidative stress in the oral cavity is driven by individual-specific bacterial communities
547metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (capsicum annuum l.) sauce
548microbiomes of velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot
549the microbial biosphere of the coral acropora cervicornis in northeastern puerto rico
550microbiota in the coelomic fluid of two common coastal starfish species and characterization of an abundant helicobacter-related taxon
551composition of bacterial and archaeal communities in the rumen of dromedary camel using cdna-amplicon sequencing
552bacterial but not fungal gut microbiota alterations are associated with common variable immunodeficiency (cvid) phenotype
553tumor microbiome diversity and composition influence pancreatic cancer outcomes
554illumina miseq sequencing for preliminary analysis of microbiome causing primary endodontic infections in egypt
555alterations of oral microbiota distinguish children with autism spectrum disorders from healthy controls
556temporal variability and stability of the fecal microbiome: the multiethnic cohort study
557distribution patterns of bacterial communities and their potential link to variable viral lysis in temperate freshwater reservoirs
558distinct microbiotas of anatomical gut regions display idiosyncratic seasonal variation in an avian folivore

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