Summary for ontology term: abomasum

Number of annotations with term: 9

Top positive-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAAATGACGGTACCTGAGTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.428571
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGTCTTCGGATTGTAAACTTCTTTTATGAGGGACGAAGGACGTGACGGTACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCG0.428571
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAGGGAAGAAGGTCTTCGGGTTGTAAACCTCTGTCCTTGGTGAAAAGGAAGGATGGTAGCCAAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT0.428571
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGGGCAACCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTTATCAGGGACGATAATGACGGTACCTGATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA0.428571
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGATGAAGTATTTCGGTACGTAAAGCTCTATCAGCAGGGAAGAAGACGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.428571
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCGACGCCGCGTGAGGGAAGAAGGTCTTCGGATTGTAAACCTCTTTCAGCAGGGAAGAAACGATGACGGTACCTGCAGAAGAAGTCACGGCTAACTACGTGCCAGCAGCCGCGG0.428571
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAGGGAAGAAGGTTTTCGGATTGTAAACCTCTGTTACAGGTGACGAAGGAAGTGACGGTAGCCTGTAAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG0.428571
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAGGGAAGAAGGGTTTCGGCTCGTAAACCTCTGTCCTAAAGGGCGAAGGACGTGACGGTACTTTAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG0.428571
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCCTTCGGGTTGTAAACTTCTTTTAACAGGGACGAAGAAGTGACGGTACCTGTTGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGG0.428571
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCGACGCCGCGTGAGGGAAGAAGGTCTTCGGATTGTAAACCTCTTTCAGCAGGGAAGAAGGAAGTGACGGTACCTGCAGAAGAAGTCACGGCTAACTACGTGCCAGCAGCCGCG0.428571

Top negative-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae;g__RomboutsiaTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.750000
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__Enterobacteriaceae;g__Escherichia/ShigellaTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGC0.500000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAGAAATGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG0.500000
d__Archaea;p__"Euryarchaeota";c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__MethanobrevibacterGCGCGAAACCTCCGCAATGTGAGAAATCGCGACGGGGGGATCCCAAGTGCCATTCTTAACGGGATGGCTTTTCATTAGTGTAAAGAGCTTTTGGAATAAGAGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGT0.500000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae;g__RomboutsiaTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGNAACGNCGNGTGAGCGATGANGGCNTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.500000
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__TuricibacterTAGGGAATCTTCGGCAATGGGCGAAAGCCTGACCGAGCAACGCCGCGTGAATGATGAAGGCCTTCGGGTTGTAAAATTCTGTTATAAGGGAAGAACGACTTTAGTAGGAAATGGCTAAAGTGTGACGGTACCTTATGAGAAAGCCACGGC0.500000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCAACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCGGCAGGGAAGAAAGGCCCGAAAGGGAGATGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGC0.500000
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAGTGAAGAAGGCCTTCGGGTTGTAAAGCTCTGTTATAGTTGACGAAGGAAGTGACGGTAGGCTATAAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG0.500000
d__Archaea;p__"Euryarchaeota";c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__MethanobrevibacterGCGCGAAACCTCCGCAATGTGAGAAATCGCGACGGGGGGATCCCAAGTGCCATTCTTAACGGGATGGCTTTTCTTAAGTGTAAAAAGCTTTTGGAATAAGAGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGT0.500000
d__Bacteria;p__Cyanobacteria/Chloroplast;c__Chloroplast;f__Chloroplast;g__StreptophytaTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGGAGGTAGAAGGCCCACGGGTTGTAAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGG0.500000

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGTTTTCGGATCGTAAACTTCTGTCCTTGGTGAAGAGAAGGAGACGGTAGCCAAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG0.666667
d__BacteriaTAGGGAATATTGCTTAATGGGCGAAAGCCTGAAGCAGCAACGCCGCGTGGACGATGGAGGCCTTCGGGTCGTAAAGTCCTTTTATGGGGGAAAAGGAAGGATGGTACCCCATGAATAAGTCTCGGCTAACTACGTGCCAGCAGCCGCGGT0.615385
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCGACGCCGCGTGAGGGAAGAAGGTCTTCGGATTGTAAACCTCTTTCAGCAGGGAAGAAACGATGACGGTACCTGCAGAAGAAGTCACGGCTAACTACGTGCCAGCAGCCGCGG0.571429
d__Bacteria;p__"Proteobacteria";c__BetaproteobacteriaTGGGGAATTTTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGAGTGAAGAAGGCCTTCGGGTTGTAAAGCTCTTTCGGACGGGAAGAAAACTGCCATGAGAACATTGTGGTGGGCTGACGGTACCGTAAGAAGAAGCACCGGC0.571429
d__BacteriaTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAACGCCGCGTGAGGGAAGAAGGGTTTCGGCTCGTAAACCTCTGTCCTAAAGGGCGAAGGACGTGACGGTACTTTAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG0.545455
d__Bacteria;p__"Bacteroidetes"TGAGGAATATTGGTCAATGGCCGGAAGGCTGAACCAGCCATGCCGCGTGCAGGAATAAGGCCCTATGGGTCGTAAACTGCTTTTGTGGTGGAGCAATAAGGGCTACGCGTAGTCCGATGAGAGTACATCACGAATAAGCATCGGCTAACT0.545455
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGGATATTGCACAATGGGCGAAAGCCTGATGCAGCAACGCCGCGTGAGGGAAGACGGTTTTCGGATTGTAAACCTCTGTCTTTGGTGACGAAGAAATGACGGTAGCCGAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCGCGG0.545455
d__Bacteria;p__"Bacteroidetes"TGAGGAATATTGGACAATGGCCGGAAGGCTGATCCAGCCATGCCGCGTGCGGGAGGACGGCCCTATGGGTTGTAAACCGCTTTTGCATGGGAGCAATAAGGGTCACGTGTGGCCCGATGAGAGTACCATACGAATAAGCATCGGCTAACT0.545455
d__Bacteria;p__"Bacteroidetes"TGAGGAATATTGGTCAATGGTCGGGAGACTGAACCAGCCAAGTCGCGTGCGGGAAGAAGGCCCTCCGGGTCGTAAACCGCTTTAGCCGGGGAGTAACGTGGGGGACGTGTCCCCCAGTGAGAGTACCCGGAGAATAAGCATCGGCTAACT0.545455
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGAATATTGCGCAATGGGGGGAACCCTGACGCAGCAACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCGGGGACGAAAAAGGACGGTACCCGCAGAAGAAGTCCCGGCTAACTACGTGCCAGCAGCCGCGGT0.545455

Annotations:

common ontology terms
term enrichment score
TermScore
abomasum0.666667
western australia0.484848
LOWER IN abomasum0.333333
age 1 year0.326531
sheep0.164948
yak0.153846
LOWER IN omasum0.153846
LOWER IN ruminant reticulum0.153846
rumen0.145455
bos grunniens0.142857
ovis aries0.141593
jejunum0.125000
LOWER IN jejunum0.125000
LOWER IN rumen0.076923
ileum0.074074
LOWER IN ileum0.074074
australia0.071111
colon0.062500
LOWER IN colon0.062500
farm0.043478
caecum0.039216
LOWER IN caecum0.039216
research facility0.012261
china0.010309
feces0.005650
LOWER IN feces0.005650
Fraction of dbbact annotations with this term covered by the query
TermScore
abomasum0.666667
western australia0.333333
LOWER IN abomasum0.333333
yak0.250000
LOWER IN omasum0.250000
LOWER IN ruminant reticulum0.250000
bos grunniens0.200000
age 1 year0.200000
jejunum0.142857
LOWER IN jejunum0.142857
sheep0.090909
rumen0.086957
ovis aries0.076923
ileum0.055556
LOWER IN ileum0.055556
LOWER IN rumen0.043478
colon0.043478
LOWER IN colon0.043478
australia0.037037
farm0.027027
caecum0.023810
LOWER IN caecum0.023810
research facility0.006173
china0.005405
feces0.002899
LOWER IN feces0.002899
Fraction of annotations for the query sequences containing the term
TermScore
age 1 year0.888889
western australia0.888889
research facility0.888889
australia0.888889
ovis aries0.888889
sheep0.888889
abomasum0.666667
rumen0.444444
LOWER IN abomasum0.333333
LOWER IN rumen0.333333
bos grunniens0.111111
yak0.111111
farm0.111111
LOWER IN omasum0.111111
LOWER IN ruminant reticulum0.111111
china0.111111
jejunum0.111111
ileum0.111111
LOWER IN jejunum0.111111
LOWER IN ileum0.111111
feces0.111111
caecum0.111111
colon0.111111
LOWER IN feces0.111111
LOWER IN colon0.111111
LOWER IN caecum0.111111

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