Summary for ontology term: age 3-5 weeks

Number of annotations with term: 8

Top positive-associated sequence

Taxonomy Sequence Recall

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__BacteriaTGAGGAATATTGGTCAATGGGCGGGAGCCTGAACCAGCCAAGCCGCGTGGAGGAAGAAGGTACAGAGTATCGTAAACTCCTTTTGTCAGGGGATAAAAAGCGGGATGTATCCCGTCTTGCAGGTACCTGAAGAAAAAGCATCGGCTAACT0.571429
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACGGTCCTACGGATTGTAAACCTCTTTTGCCGGGGAGCAAGCCGCTGCACGAGTGCGGCGGCTGAGAGTACCCGGAGAAAAAGCATCGGCTAAC0.571429
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Porphyromonadaceae"TGAGGAATATTGGTCAATGGCCGAGAGGCTGAACCAGCCAAGTCGCGTGAGGGATGACGGCCCTACGGGTTGTAAACCTCTTTTGTCAGGGAGCAAATAGAGCCACGTGTGGCTCGTCGAGAGTACCTGAAGAAAAAGCATCGGCTAACT0.571429
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACGGTCCTACGGATTGTAAACCTCTTTTGTCGGGGAGCAACAAGGCCACGTGTGGCCGAAAGTGAGAGTACCCGAAGAAAAAGCATCGGCTAAC0.571429
d__Bacteria;p__"Proteobacteria";c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__HelicobacterTAGGGAATATTGCTCAATGGGGGAAACCCTGAAGCAGCAACGCCGCGTGGAGGATGAAGGTTTTCGGATTGTAAACTCCTTTTCTAAGAGAAGATAATGACGGTATCTTAGGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTA0.571429
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACGGCCCTATGGGTTGTAAACCTCTTTTGTCGGGGAGCAAAGGCATCACGTGTGATGCTCCGAGAGTACCCGAAGAAAAAGCATCGGCTAACTC0.461538
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Porphyromonadaceae"TGAGGAATATTGGTCAATGGGCGGGAGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACGGTCCTACGGATTGTAAACCTCTTTTGCCGGGGAGCAAAGAGCGGGACGTGTCCCGCGCCGAGAGTACCCGGAGAAAAAGCATCGGCTAACT0.461538
d__Bacteria;p__"Bacteroidetes"TGAGGAATATTGGTCAATGGGCTGAGGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACGGTCCTATGGATTGTAAACCTCTTTTGCCGGGGAGCAACGACGCCACGTGTGGCGGAAGTGAGAGTACCCGGAGAAAAAGCATCGGCTAACT0.461538
d__Bacteria;p__"Bacteroidetes"TGAGGAATATTGGTCAATGGCCGGGAGGCTGAACCAGCCAAGCCGCGTGAGGGAAGAAGGCCCTACGGGTCGTAAACCTCTTTTGTCAGGGAACAAAAACCGGTACGTGTACCGGGTTGAGTGTACCTGAAGAAAAAGCATCGGCTAACT0.461538
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACGGTCCTATGGATTGTAAACCTCTTTTGTCGGGGAGCAATGACGGTCACGAGTGACTGTTGTGAGAGTACCCGAAGAAAAAGCATCGGCTAAC0.461538

Annotations:

common ontology terms
term enrichment score
TermScore
age 3-5 weeks0.800000
peromyscus maniculatus0.600000
deer mice0.600000
algonquin provincial park0.600000
red-eared slider turtle0.333333
trachemys scripta elegans0.333333
turtle farm0.333333
province of ontario0.315789
hainan autonomous prefecture0.250000
LOWER IN research facility0.133333
LOWER IN captive0.125000
LOWER IN wild0.090909
canada0.068182
captive0.063158
intestine0.060606
wild0.056075
farm0.043478
research facility0.011009
china0.010152
feces0.005204
Fraction of dbbact annotations with this term covered by the query
TermScore
age 3-5 weeks0.666667
red-eared slider turtle0.500000
trachemys scripta elegans0.500000
turtle farm0.500000
peromyscus maniculatus0.500000
deer mice0.500000
algonquin provincial park0.500000
hainan autonomous prefecture0.250000
province of ontario0.200000
LOWER IN research facility0.142857
LOWER IN captive0.125000
LOWER IN wild0.071429
canada0.035714
intestine0.034483
captive0.034483
wild0.030303
farm0.023810
research facility0.005587
china0.005181
feces0.002611
Fraction of annotations for the query sequences containing the term
TermScore
age 3-5 weeks1.000000
feces0.750000
canada0.750000
peromyscus maniculatus0.750000
deer mice0.750000
province of ontario0.750000
algonquin provincial park0.750000
research facility0.375000
captive0.375000
wild0.375000
china0.250000
red-eared slider turtle0.250000
trachemys scripta elegans0.250000
intestine0.250000
turtle farm0.250000
farm0.250000
hainan autonomous prefecture0.250000
LOWER IN wild0.125000
LOWER IN captive0.125000
LOWER IN research facility0.125000
Number of experiments associating the term to the sequence
TermScore
age 3-5 weeks2.000000
china1.000000
red-eared slider turtle1.000000
trachemys scripta elegans1.000000
intestine1.000000
turtle farm1.000000
farm1.000000
hainan autonomous prefecture1.000000
feces1.000000
canada1.000000
peromyscus maniculatus1.000000
deer mice1.000000
province of ontario1.000000
algonquin provincial park1.000000
research facility1.000000
LOWER IN wild1.000000
captive1.000000
wild1.000000
LOWER IN captive1.000000
LOWER IN research facility1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
537amnonhigh freq. in feces of wild caught deer mice feces (dominant feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, wild)2019-07-28v31 / 10approvedNo
590amnondominant china, red-eared slider turtle, trachemys scripta elegans, age 3-5 weeks, intestine, turtle farm, farm, hainan autonomous prefecture2020-02-10v41 / 11approvedNo
537amnonhigh freq. in feces of captive grown deer mice feces (dominant feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, research facility, captive)2019-07-28v31 / 19approvedNo
590amnoncommon china, red-eared slider turtle, trachemys scripta elegans, age 3-5 weeks, intestine, turtle farm, farm, hainan autonomous prefecture2020-02-10v41 / 83approvedNo
537amnonhigher in feces of deer mice grown in captivity compared to wild caught ( high in research facility captive compared to wild in feces canada peromyscus maniculatus deer mice age 3-5 weeks province of ontario algonquin provincial park )2019-07-28v31 / 96approvedNo
537amnoncommon in feces of captive grown deer mice feces (common feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, research facility, captive)2019-07-28v31 / 121approvedNo
537amnoncommon in feces of wild caught deer mice feces (common feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, wild)2019-07-28v31 / 163approvedNo
537amnonlower in feces of deer mice grown in captivity compared to wild caught ( high in wild compared to captive research facility in feces canada peromyscus maniculatus deer mice age 3-5 weeks province of ontario algonquin provincial park )2019-07-28v31 / 358approvedNo

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