Summary for ontology term: amsterdam

Number of annotations with term: 30

Top positive-associated sequence

Taxonomy Sequence Recall

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__BifidobacteriumGATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGGGATCCATCAAGCTTGCTTGGTGGTGAGAGTGGCGAACGGGTGAGTAATGCGTGACCGACCTGCCCCATACACCGGAATAGCTCCTGGAAACGGGTGGTAATGCCGGAT0.222222
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__BifidobacteriumGATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGGGATCCCAGGAGCTTGCTCCTGGGTGAGAGTGGCGAACGGGTGAGTAATGCGTGACCGACCTGCCCCATACACCGGAATAGCTCCTGGAAACGGGTGGTAATGCCGGAT0.217391
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__BifidobacteriumGATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGGGATCCATCAGGCTTTGCTTGGTGGTGAGAGTGGCGAACGGGTGAGTAATGCGTGACCGACCTGCCCCATACACCGGAATAGCTCCTGGAAACGGGTGGTAATGCCGGA0.196078
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__PeptostreptococcaceaeGATGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATTCTCTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCGAAAGGTATGCTAATACGGGATAACATAAGAAAT0.166667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__PeptostreptococcaceaeGATGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATTCTCTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCGAAAGGTATGCTAATACGAGATAATATGCTTTTA0.163265
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__ErysipelotrichaceaeGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGCTTCACTTCGGTGAAGAGTGGCGAACGGGTGAGTAATACATAAGTAACCTGGCATCTACAGGGGGATAACTGATGGAAACGTCAGCTAAGACCGCATAGGTGTAGAGAT0.160000
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesGATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGGGAAATATTTCATTGAGACTTCGGTGGATTTGATCTATTTCTAGTGGCGGACGGGGGAGTAACGCGTGGGTAACCTGCCTTATACAGGGGGATAACAGTCAGAAATGGC0.157895
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Coriobacteriales;f__Coriobacteriaceae;g__CollinsellaGATGAACGCTGGCGGCGCGCCTAACACATGCAAGTCGAACGGCACCCCTCTCCGGAGGGAAGCGAGTGGCGAACGGCTGAGTAACACGTGGAGAACCTGCCCCCTCCCCCGGGATAGCCGCCCGAAAGGACGGGTAATACCGGATACCCC0.156863
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__PeptostreptococcaceaeGATGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATCTTCTTCGGAAGAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCGAAAGGTATGCTAATACGGGATAACATAAGAAAT0.146341
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__AnaerostipesGATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAAACACCTTATTTGATTTTCTTCGGAACTGAAGATTTGGTGATTGAGTGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACAGGGGGATAACAGTCAGAAAT0.142857

Annotations:

common ontology terms
Fraction of dbbact annotations with this term covered by the query
TermScore
amsterdam1.000000
crohn's disease1.000000
LOWER IN crohn's disease1.000000
kingdom of the netherlands0.500000
acquired immunodeficiency syndrome0.500000
LOWER IN acquired immunodeficiency syndrome0.500000
before antibiotics0.500000
LOWER IN before antibiotics0.500000
LOWER IN vancomycin0.250000
vancomycin0.250000
heterosexual0.200000
msw0.200000
LOWER IN heterosexual0.200000
LOWER IN msw0.200000
iga positive fraction0.200000
LOWER IN iga negative fraction0.200000
iga negative fraction0.200000
LOWER IN iga positive fraction0.200000
homosexual0.166667
msm0.166667
LOWER IN homosexual0.166667
LOWER IN msm0.166667
hiv infection0.100000
LOWER IN hiv infection0.100000
male0.090909
LOWER IN antibiotic0.062500
antibiotic0.062500
human adult stage0.045455
female0.031746
LOWER IN male0.030303
child0.027778
saliva0.021739
adult0.017341
LOWER IN female0.015873
homo sapiens0.014760
LOWER IN control0.010811
control0.010811
feces0.009554
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
amsterdam1.000000
adult0.800000
feces0.766667
kingdom of the netherlands0.766667
male0.300000
saliva0.233333
human adult stage0.200000
child0.200000
control0.166667
homosexual0.133333
msm0.133333
heterosexual0.100000
msw0.100000
female0.100000
before antibiotics0.100000
antibiotic0.100000
vancomycin0.100000
crohn's disease0.100000
LOWER IN control0.066667
LOWER IN hiv infection0.066667
LOWER IN acquired immunodeficiency syndrome0.066667
iga positive fraction0.066667
LOWER IN iga negative fraction0.066667
iga negative fraction0.066667
LOWER IN iga positive fraction0.066667
LOWER IN heterosexual0.033333
LOWER IN msw0.033333
LOWER IN homosexual0.033333
LOWER IN msm0.033333
hiv infection0.033333
acquired immunodeficiency syndrome0.033333
LOWER IN antibiotic0.033333
LOWER IN vancomycin0.033333
LOWER IN before antibiotics0.033333
LOWER IN female0.033333
LOWER IN male0.033333
LOWER IN crohn's disease0.033333
Exp. ID User ID Description Date Region Flag Sequences
871amnon high in iga negative fraction compared to iga positive fraction in feces homo sapiens antibiotic vancomycin adult male kingdom of the netherlands amsterdam human adult stage 2022-02-19v3No1 / 2
66amnon high in male compared to female in homo sapiens saliva adult amsterdam 2017-02-18v4No1 / 3
66amnon high in female compared to male in homo sapiens saliva adult amsterdam 2017-02-18v4No1 / 3
66amnoncorrelated group of bacteria in saliva (other homo sapiens, saliva, adult, amsterdam)2017-02-19v4No1 / 4
66amnoncorrelated group of bacteria in saliva (other homo sapiens, saliva, adult, amsterdam)2017-02-19v4No1 / 4
66amnoncorrelated group of bacteria in saliva (other homo sapiens, saliva, adult, amsterdam)2017-02-19v4No1 / 5
730amnon high in crohn's disease compared to control in feces homo sapiens child kingdom of the netherlands amsterdam 2021-01-05v1No1 / 7
629amnon high in control compared to hiv infection acquired immunodeficiency syndrome in feces homo sapiens adult kingdom of the netherlands amsterdam homosexual msm 2020-05-31v4No1 / 9
629amnon high in hiv infection acquired immunodeficiency syndrome compared to control in feces homo sapiens adult kingdom of the netherlands amsterdam 2020-05-31v4No1 / 10
730amnondominant feces, homo sapiens, control, child, kingdom of the netherlands, amsterdam2021-01-05v1No1 / 17
871amnon high in iga positive fraction compared to iga negative fraction in feces homo sapiens adult male kingdom of the netherlands amsterdam before antibiotics human adult stage 2022-02-19v3No1 / 19
66amnondominant homo sapiens, saliva, adult, amsterdam2017-02-18v4No1 / 19
629amnondominant feces, homo sapiens, adult, kingdom of the netherlands, amsterdam, heterosexual, msw2020-05-31v4No1 / 20
629amnondominant feces, homo sapiens, adult, kingdom of the netherlands, amsterdam, homosexual, msm2020-05-31v4No1 / 20
730amnondominant feces, homo sapiens, child, kingdom of the netherlands, amsterdam, crohn's disease2021-01-05v1No1 / 20
629amnondominant feces, homo sapiens, female, adult, kingdom of the netherlands, amsterdam2020-05-31v4No1 / 22
871amnon high in iga negative fraction compared to iga positive fraction in feces homo sapiens adult male kingdom of the netherlands amsterdam before antibiotics human adult stage 2022-02-19v3No1 / 30
629amnon high in control compared to hiv infection acquired immunodeficiency syndrome in feces homo sapiens adult kingdom of the netherlands amsterdam 2020-05-31v4No1 / 34
871amnon high in iga positive fraction compared to iga negative fraction in feces homo sapiens antibiotic vancomycin adult male kingdom of the netherlands amsterdam human adult stage 2022-02-19v3No1 / 35
871amnonlower before antibiotic treatment compared to after treatment ( high in antibiotic vancomycin compared to before antibiotics in feces homo sapiens adult male kingdom of the netherlands amsterdam human adult stage )2022-02-19v3No1 / 44
730amnoncommon feces, homo sapiens, child, kingdom of the netherlands, amsterdam, crohn's disease2021-01-05v1No1 / 51
730amnon high in control compared to crohn's disease in feces homo sapiens child kingdom of the netherlands amsterdam 2021-01-05v1No1 / 52
629amnon high in heterosexual msw compared to homosexual msm in feces homo sapiens adult male kingdom of the netherlands amsterdam 2020-05-31v4No1 / 85
629amnoncommon feces, homo sapiens, female, adult, kingdom of the netherlands, amsterdam2020-05-31v4No1 / 89
730amnoncommon feces, homo sapiens, control, child, kingdom of the netherlands, amsterdam2021-01-05v1No1 / 97
629amnoncommon feces, homo sapiens, adult, kingdom of the netherlands, amsterdam, heterosexual, msw2020-05-31v4No1 / 97
66amnoncommon homo sapiens, saliva, adult, amsterdam2017-02-18v4No1 / 102
629amnoncommon feces, homo sapiens, adult, kingdom of the netherlands, amsterdam, homosexual, msm2020-05-31v4No1 / 141
629amnon high in homosexual msm compared to heterosexual msw in feces homo sapiens adult male kingdom of the netherlands amsterdam 2020-05-31v4No1 / 154
871amnonhigher before antibiotic treatment compared to after treatment ( high in before antibiotics compared to antibiotic vancomycin in feces homo sapiens adult male kingdom of the netherlands amsterdam human adult stage )2022-02-19v3No1 / 232

Problems / suggestions? Please email info AT dbbact DOT org