Summary for ontology term: antibiotic

Number of annotations with term: 70

Top positive-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__EnterococcusTACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTCTTAAGTCTGATGTGAAAGCCCCCGGCTCAACCGGGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTGGAATTCCATG0.195652
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__Enterobacteriaceae;g__Escherichia/ShigellaTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGG0.195652
d__Bacteria;p__"Verrucomicrobia";c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__AkkermansiaTACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGG0.108696
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Clostridium XVIIITACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGGGAGCAGGCGGCAGCAAAGGTCTGTGGTGAAAGACTGAAGCTTAACTTCAGTAAGCCATAGAAACCGGGCAGCTAGAGTGCAGGAGAGGATCGTGGAATTCCATGT0.086957
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__EnterobacteriaceaeTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAGAGGGGGGTAGAATTCCAGG0.086957
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Clostridium XlVaTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGCAAGTCTGAAGTGAAAACCCAGGGCTCAACCCTGGGACTGCTTTGGAAACTGTTTTGCTAGAGTGTCGGAGAGGTAAGTGGAATTCCTAG0.086957
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__BlautiaTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGAAGAGCAAGTCTGATGTGAAAGGCTGGGGCTTAACCCCAGGACTGCATTGGAAACTGTTTTTCTAGAGTGCCGGAGAGGTAAGCGGAATTCCTAG0.086957
d__Bacteria;p__FirmicutesTACGTAGGTGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGTGCGTAGGTGGCGTACTAAGTCTGTAGTAAAAGGCAATGGCTCAACCATTGTAAGCTATGGAAACTGGTATGCTGGAGTGCAGAAGAGGGCGATGGAATTCCATGT0.086957
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__AnaerostipesTACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGTGCGTAGGTGGCATGGTAAGTCAGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTTGAAACTGTCATGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAG0.086957
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__StreptococcusTACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTGATAAGTCTGAAGTTAAAGGCTGTGGCTCAACCATAGTTCGCTTTGGAAACTGTCAAACTTGAGTGCAGAAGGGGAGAGTGGAATTCCATGT0.065217

Top negative-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1;g__Clostridium sensu strictoTACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAG0.384615
d__Bacteria;p__FirmicutesTACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATG0.384615
d__BacteriaTACGTAGGGAGCAAGCGTTATCCGGAATTATTGGGTGTAAAGGGTGCGTAGACGGGATAACAAGTTGGTTGTGAAACCCCTCGGCTCAACTGAGGAACTGCAACCAAAACTATTATTCTTGAGTGCAGGAGAGGAAAGTGGAATTCCTAG0.384615
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGAGACAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGCCTGACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAG0.384615
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGACGGCAAGTCAGATGTGAAAACTGAGGGCTCAACCTTCAGACTGCATTTGAAACTGCTGTTCTTGAGTGAAGTAGAGGTAAGCGGAATTCCTAG0.384615
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae;g__RomboutsiaTACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTACGGCTCAACCGTAGTAAGCCTTTGAAACTGGGAAACTTGAGTGCAGGAGAGGAGAGTGGAATTCCTAGT0.346154
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAG0.346154
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAG0.346154
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGCGGCAAGTCTGAAGTGAAAGGCAGGGGCTTAACCCCTGAACTGCTTTGGAAACTGCCATGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAG0.346154
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAGGATAAGTTGAATGTGAAATCTATGGGCTCAACCCATAGCTGCGTTCAAAACTGTTCTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGT0.346154

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__"Bacteroidetes"TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACTGTTAAGTCAGCGGTGAAATACCACGGCTCAACCGTGGGGCTGCCGTTGATACTGGCGGTCTGGAGTACGATCGGCGCCGGCGGAATGTGTCA0.153846
d__BacteriaTACGGAAGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGACTGTTAAGTCTGCGGTGAAATGTCATGGCCCAACCTTGGCATGCCGCGGATACTGATGGTCTTGAGTGCACACAAGGAAGATGGAATTCGTCGT0.148148
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGATTTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGAAGTCTTGAGTGCACGCAGGGATGCTGGAATTCGTCG0.145455
d__Bacteria;p__"Bacteroidetes"TACGGAGGATCCGAGTGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGGGATCAAGTCAGTGGTGAAATGGTGCGGCTCAACCGTAGCATTGCCGTTGAAACTGGTTCTCTTGAGTGCGAATGAGGCAGGCGGAATGTGTTG0.137931
d__BacteriaCACGTAAGCCTCGAGCGTTGTTCGGAATTATTGGGCGTAAAGGGCATGTAGGCGGTTATCTAAGCTTGGTGTGAAATTCAGGAGCTCAACTCCTGAACTGCATTGAGAACTGGATAGCTAGAGTTACTGAAGTGGAATCAGAATTCCAGG0.135593
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGGTAAGTCAGTGGTGAAAGTTTGCGGCTCAACCGTAAAATTGCCGTTGAAACTGCCGTTCTTGAGTGCGAGCGAGGTAGGCGGAATGTGCCG0.135593
d__BacteriaTACGGAGGATGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCTGTGGTCCAAGTCAGGGGTGAAAGCCCGGAGCTCAACTCCGGAACTGCCTTTGATACTGGATTGCTGGAATACGGATGCCGTGGGAGGAATGAGTAG0.135593
d__Bacteria;p__"Verrucomicrobia";c__Verrucomicrobiae;o__Verrucomicrobiales;f__VerrucomicrobiaceaeTACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTACGTAGGCTGTAAATTAAGTCGTGCGTGAAAGGCAGGGGCTCAACCTCTGGAGTGCGCATGATACTGATTTACTGGAGTAATGGAGGGGGAACCGGAATTCTTGG0.131148
TACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGTGGTTTATTAAGTCTGGTGTAAAAGGCAGTGGCTCAACCATTGTATGCATTGGAAACTGGTAGACTTGAGTGC0.127660
TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGGAGTAGTGCATTGGAAACTGGGAGACTTGAGTG0.127660

Annotations:

common ontology terms
term enrichment score
TermScore
antibiotic0.750000
LOWER IN antibiotic0.523929
mus musculoides0.186047
nyulmc0.186047
nod/shiltj (no. 001976, jackson labs)0.186047
streptomycin0.181818
metronidazole0.175439
vancomycin0.171429
LOWER IN metronidazole0.155844
neomycin0.153846
research facility0.143987
age 2 months0.141176
horse0.140351
equus caballus0.140351
LOWER IN control0.137294
mouse0.131204
ampicillin0.131148
control0.129310
caecum0.129032
oryctolagus cuniculus0.127660
mus musculus0.121629
c57bl/6j0.116505
LOWER IN vancomycin0.106667
rex rabbit0.097561
male0.092308
amsterdam0.088889
sprague dawley0.088889
salmonella infections0.082192
rattus norvegicus0.081633
LOWER IN ampicillin0.080000
united states of america0.079988
antibiotics induced colitis0.078947
belgium0.078431
kingdom of the netherlands0.078431
female organism0.077922
adult organism0.077922
feces0.076796
rat0.075472
sichuan province0.072727
state of florida0.067416
dog0.065574
c57bl/60.063158
israel0.062827
canis lupus familiaris0.062500
sus scrofa0.059701
pig0.059701
colitis0.057692
canine chronic enteropathy0.055556
chronic enteropathy0.055556
abnormality of the intestine0.055556
before antibiotics0.054795
state of louisiana0.054054
zebrafish0.054054
age 15d0.054054
LOWER IN neomycin0.054054
pulsed antibiotic treatment, macrolide tylosin tartrate0.054054
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate0.054054
sub-therapeutic antibiotic treatment, penicillin v potassium salt0.054054
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt0.054054
LOWER IN tylosin phosphate0.054054
tylosin phosphate0.054054
larvae0.052632
salmonella gastroenteritis0.052632
rabbit0.051282
salmonellosis0.051282
colon0.049383
danio rerio0.048780
state of texas0.046512
switzerland0.045455
state of california0.044944
nasopharynx0.044444
commonwealth of pennsylvania0.044444
cow0.043478
fish0.040000
bos taurus0.037736
human adult stage0.036697
kingdom of spain0.035714
LOWER IN colitis0.034483
canada0.030769
adult0.028986
LOWER IN salmonella infections0.028169
antimicrobial agent0.028169
antibiotics supllemented diet0.028169
LOWER IN antibiotics supllemented diet0.028169
LOWER IN cefoperazone0.027778
cefoperazone0.027778
LOWER IN ciprofloxacin0.027778
ciprofloxacin0.027778
LOWER IN clindamycin0.027778
clindamycin0.027778
LOWER IN streptomycin0.027778
LOWER IN doxycycline0.027778
LOWER IN amoxicillin0.027778
acute severe colitis0.027778
LOWER IN antibiotics induced colitis0.027778
no antimicrobial treatment0.027778
LOWER IN no antimicrobial treatment0.027778
LOWER IN iron deficient diet0.027397
iron supplemented diet0.027397
LOWER IN iron supplemented diet0.027397
Fraction of dbbact annotations with this term covered by the query
TermScore
antibiotic1.000000
salmonella infections1.000000
streptomycin1.000000
LOWER IN salmonella infections1.000000
antimicrobial agent1.000000
antibiotics supllemented diet1.000000
LOWER IN antibiotics supllemented diet1.000000
canine chronic enteropathy1.000000
chronic enteropathy1.000000
abnormality of the intestine1.000000
LOWER IN antibiotic0.888889
LOWER IN metronidazole0.857143
ampicillin0.800000
LOWER IN vancomycin0.800000
neomycin0.750000
metronidazole0.714286
before antibiotics0.666667
LOWER IN ampicillin0.600000
vancomycin0.600000
state of louisiana0.500000
LOWER IN cefoperazone0.500000
cefoperazone0.500000
LOWER IN ciprofloxacin0.500000
ciprofloxacin0.500000
LOWER IN clindamycin0.500000
clindamycin0.500000
zebrafish0.500000
age 15d0.500000
LOWER IN streptomycin0.500000
LOWER IN neomycin0.500000
LOWER IN doxycycline0.500000
LOWER IN amoxicillin0.500000
acute severe colitis0.500000
pulsed antibiotic treatment, macrolide tylosin tartrate0.500000
mus musculoides0.500000
nyulmc0.500000
nod/shiltj (no. 001976, jackson labs)0.500000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate0.500000
sub-therapeutic antibiotic treatment, penicillin v potassium salt0.500000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt0.500000
LOWER IN antibiotics induced colitis0.500000
antibiotics induced colitis0.500000
LOWER IN tylosin phosphate0.500000
tylosin phosphate0.500000
no antimicrobial treatment0.500000
LOWER IN no antimicrobial treatment0.500000
age 2 months0.400000
LOWER IN iron deficient diet0.333333
iron supplemented diet0.333333
LOWER IN iron supplemented diet0.333333
iron deficient diet0.333333
rex rabbit0.333333
larvae0.333333
probiotic0.333333
salmonella gastroenteritis0.333333
LOWER IN before antibiotics0.333333
rabbit0.250000
oryctolagus cuniculus0.250000
salmonellosis0.250000
LOWER IN normal diet0.200000
amsterdam0.200000
sprague dawley0.200000
c57bl/6j0.181818
horse0.181818
equus caballus0.181818
danio rerio0.166667
rattus norvegicus0.142857
state of texas0.125000
belgium0.125000
kingdom of the netherlands0.125000
israel0.117647
LOWER IN iga negative fraction0.111111
iga positive fraction0.111111
LOWER IN iga positive fraction0.111111
iga negative fraction0.111111
rat0.111111
switzerland0.111111
sichuan province0.100000
nasopharynx0.100000
commonwealth of pennsylvania0.100000
caecum0.095238
cow0.090909
LOWER IN control0.084211
mouse0.081967
research facility0.080247
control0.078947
dog0.076923
ulcerative colitis0.076923
mus musculus0.074627
female organism0.071429
adult organism0.071429
canis lupus familiaris0.068966
male0.068182
control diet0.066667
fish0.066667
sus scrofa0.062500
pig0.062500
state of florida0.055556
bos taurus0.055556
c57bl/60.050000
Fraction of annotations for the query sequences containing the term
TermScore
feces0.714286
research facility0.700000
united states of america0.685714
antibiotic0.600000
LOWER IN control0.371429
LOWER IN antibiotic0.371429
control0.357143
mouse0.328571
mus musculus0.328571
caecum0.200000
adult0.142857
male0.142857
homo sapiens0.128571
horse0.114286
equus caballus0.114286
mus musculoides0.114286
nyulmc0.114286
nod/shiltj (no. 001976, jackson labs)0.114286
metronidazole0.100000
streptomycin0.100000
vancomycin0.100000
LOWER IN metronidazole0.085714
c57bl/60.085714
female organism0.085714
state of florida0.085714
age 2 months0.085714
oryctolagus cuniculus0.085714
c57bl/6j0.085714
neomycin0.085714
adult organism0.085714
colitis0.085714
ampicillin0.071429
dog0.057143
canis lupus familiaris0.057143
LOWER IN vancomycin0.057143
rex rabbit0.057143
sichuan province0.057143
state of california0.057143
female0.057143
colon0.057143
belgium0.057143
sus scrofa0.057143
pig0.057143
human adult stage0.057143
amsterdam0.057143
kingdom of the netherlands0.057143
rat0.057143
rattus norvegicus0.057143
sprague dawley0.057143
salmonella infections0.042857
LOWER IN 0.042857
LOWER IN ampicillin0.042857
israel0.042857
antibiotics induced colitis0.042857
state of louisiana0.028571
rabbit0.028571
kingdom of spain0.028571
fish0.028571
zebrafish0.028571
danio rerio0.028571
larvae0.028571
age 15d0.028571
LOWER IN neomycin0.028571
before antibiotics0.028571
state of texas0.028571
pulsed antibiotic treatment, macrolide tylosin tartrate0.028571
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate0.028571
sub-therapeutic antibiotic treatment, penicillin v potassium salt0.028571
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt0.028571
bos taurus0.028571
cow0.028571
nasopharynx0.028571
canada0.028571
LOWER IN colitis0.028571
salmonella gastroenteritis0.028571
salmonellosis0.028571
LOWER IN tylosin phosphate0.028571
tylosin phosphate0.028571
canine chronic enteropathy0.028571
chronic enteropathy0.028571
abnormality of the intestine0.028571
commonwealth of pennsylvania0.028571
switzerland0.028571
LOWER IN iron deficient diet0.014286
iron supplemented diet0.014286
LOWER IN iron supplemented diet0.014286
iron deficient diet0.014286
LOWER IN salmonella infections0.014286
antimicrobial agent0.014286
LOWER IN normal diet0.014286
antibiotics supllemented diet0.014286
LOWER IN antibiotics supllemented diet0.014286
control diet0.014286
LOWER IN cefoperazone0.014286
cefoperazone0.014286
LOWER IN ciprofloxacin0.014286
ciprofloxacin0.014286
LOWER IN clindamycin0.014286
clindamycin0.014286
Number of experiments associating the term to the sequence
TermScore
antibiotic18.000000
LOWER IN control16.000000
LOWER IN antibiotic16.000000
control15.000000
feces14.000000
research facility13.000000
united states of america11.000000
LOWER IN metronidazole6.000000
metronidazole5.000000
mouse5.000000
mus musculus5.000000
caecum4.000000
ampicillin4.000000
LOWER IN vancomycin4.000000
LOWER IN 3.000000
LOWER IN ampicillin3.000000
vancomycin3.000000
neomycin3.000000
adult3.000000
homo sapiens3.000000
male3.000000
dog2.000000
canis lupus familiaris2.000000
streptomycin2.000000
age 2 months2.000000
oryctolagus cuniculus2.000000
c57bl/6j2.000000
LOWER IN neomycin2.000000
before antibiotics2.000000
israel2.000000
horse2.000000
equus caballus2.000000
rat2.000000
rattus norvegicus2.000000
sprague dawley2.000000
state of louisiana1.000000
LOWER IN iron deficient diet1.000000
iron supplemented diet1.000000
salmonella infections1.000000
c57bl/61.000000
female organism1.000000
state of florida1.000000
LOWER IN iron supplemented diet1.000000
iron deficient diet1.000000
LOWER IN salmonella infections1.000000
antimicrobial agent1.000000
LOWER IN normal diet1.000000
antibiotics supllemented diet1.000000
rabbit1.000000
kingdom of spain1.000000
LOWER IN antibiotics supllemented diet1.000000
control diet1.000000
LOWER IN cefoperazone1.000000
cefoperazone1.000000
LOWER IN ciprofloxacin1.000000
ciprofloxacin1.000000
LOWER IN clindamycin1.000000
clindamycin1.000000
rex rabbit1.000000
sichuan province1.000000
fish1.000000
zebrafish1.000000
danio rerio1.000000
larvae1.000000
age 15d1.000000
LOWER IN streptomycin1.000000
state of california1.000000
LOWER IN doxycycline1.000000
LOWER IN amoxicillin1.000000
ulcerative colitis1.000000
acute severe colitis1.000000
probiotic1.000000
state of texas1.000000
pulsed antibiotic treatment, macrolide tylosin tartrate1.000000
mus musculoides1.000000
nyulmc1.000000
nod/shiltj (no. 001976, jackson labs)1.000000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate1.000000
female1.000000
sub-therapeutic antibiotic treatment, penicillin v potassium salt1.000000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt1.000000
bos taurus1.000000
cow1.000000
nasopharynx1.000000
canada1.000000
adult organism1.000000
LOWER IN antibiotics induced colitis1.000000
LOWER IN colitis1.000000
colitis1.000000
antibiotics induced colitis1.000000
salmonella gastroenteritis1.000000
salmonellosis1.000000
LOWER IN tylosin phosphate1.000000
colon1.000000
belgium1.000000
sus scrofa1.000000
pig1.000000
tylosin phosphate1.000000
human adult stage1.000000
amsterdam1.000000
kingdom of the netherlands1.000000
LOWER IN before antibiotics1.000000
LOWER IN iga negative fraction1.000000
iga positive fraction1.000000
LOWER IN iga positive fraction1.000000
iga negative fraction1.000000
no antimicrobial treatment1.000000
canine chronic enteropathy1.000000
chronic enteropathy1.000000
abnormality of the intestine1.000000
commonwealth of pennsylvania1.000000
LOWER IN no antimicrobial treatment1.000000
switzerland1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
871amnon high in iga negative fraction compared to iga positive fraction in human adult stage amsterdam kingdom of the netherlands male adult vancomycin antibiotic homo sapiens feces 2022-02-19v31 / 2approvedNo
954amnonhigher in iron deficient diet in mice treated with antibiotics and salmonella ( high in iron deficient diet compared to iron supplemented diet in caecum united states of america state of florida female organism c57bl/6 research facility mus musculus mouse antibiotic streptomycin salmonella infections )2022-12-15v41 / 3approvedNo
385amnoncolonize probiotic supplemented mice following antibiotics treatment ( high in probiotic compared to control in israel research facility mouse mus musculus feces antibiotic )2018-10-23v41 / 3approvedNo
46amnonsmj: higher in female mice feces treated with antibiotics ( high in sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )2017-01-12v41 / 3approvedNo
446amnonhigher in zebrafish larvae exposed to subclinical concentration of streptomycin compared to controls ( high in antibiotic streptomycin compared to control in fish zebrafish danio rerio research facility larvae age 15d united states of america )2019-01-08v41 / 4approvedNo
327amnonhigher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )2018-04-30v41 / 4approvedNo
954amnon high in salmonella infections compared to control in streptomycin antibiotic mouse mus musculus research facility c57bl/6 female organism state of florida united states of america caecum 2022-12-15v41 / 5approvedNo
954amnon high in control compared to salmonella infections in caecum united states of america state of florida female organism c57bl/6 research facility mus musculus mouse antibiotic streptomycin 2022-12-15v41 / 5approvedNo
399amnonhigher in clindamycin treated mice compared to controls ( high in clindamycin antibiotic compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 5approvedNo
399amnonhigher in metronidazole treated mice compared to controls ( high in antibiotic metronidazole compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 5approvedNo
399amnonhigher in vancomycin treated mice compared to controls ( high in antibiotic vancomycin compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 5approvedNo
25amnon high in antibiotic compared to control in oryctolagus cuniculus caecum rex rabbit sichuan province research facility 2016-12-01v41 / 5approvedNo
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 6approvedNo
1010amnon high in antibiotic compared to no antimicrobial treatment in feces dog canis lupus familiaris united states of america commonwealth of pennsylvania abnormality of the intestine chronic enteropathy canine chronic enteropathy 2023-02-02v41 / 6approvedNo
399amnonhigher in ampicillin treated mice compared to controls ( high in ampicillin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 8approvedNo
46amnonsmj: lower in female mice feces than treated with antibiotics ( high in control compared to sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )2017-01-12v41 / 10approvedNo
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 10approvedNo
954amnondominant caecum, united states of america, state of florida, female organism, c57bl/6, research facility, mus musculus, mouse, antibiotic, streptomycin2022-12-15v41 / 13approvedNo
902amnondominant salmonellosis, adult organism, horse, equus caballus, salmonella gastroenteritis, antibiotic, united states of america, feces2022-05-02v41 / 13approvedNo
1010amnon high in no antimicrobial treatment compared to antibiotic in canine chronic enteropathy chronic enteropathy abnormality of the intestine commonwealth of pennsylvania united states of america canis lupus familiaris dog feces 2023-02-02v41 / 13approvedNo
648amnon high in antibiotic metronidazole compared to control in united states of america dog canis lupus familiaris feces state of louisiana 2020-09-06v41 / 14approvedNo
25amnon high in control compared to antibiotic in oryctolagus cuniculus caecum rex rabbit sichuan province research facility 2016-12-01v41 / 15approvedNo
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v41 / 15approvedNo
683amnondominant during antibiotics treatment in feces (dominant metronidazole, vancomycin, neomycin, antibiotic, state of california, united states of america, adult, feces, homo sapiens)2028-03-04v41 / 16approvedNo
659amnon high in before antibiotics compared to doxycycline metronidazole amoxicillin vancomycin antibiotic in ulcerative colitis acute severe colitis homo sapiens child feces 2020-09-19v41 / 16approvedNo
46amnonsmj: higher in female mice feces treated with antibiotics ( high in antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )2017-01-12v41 / 16approvedNo
902amnondominant antibiotics induced colitis, colitis, adult organism, horse, equus caballus, antibiotic, colitis, united states of america, feces2022-05-02v41 / 16approvedNo
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v41 / 16approvedNo
954amnoncommon streptomycin, antibiotic, mouse, mus musculus, research facility, c57bl/6, female organism, state of florida, united states of america, caecum2022-12-15v41 / 19approvedNo
954amnonlower in iron deficient diet in mice treated with antibiotics and salmonella ( high in iron supplemented diet compared to iron deficient diet in salmonella infections streptomycin antibiotic mouse mus musculus research facility c57bl/6 female organism state of florida united states of america caecum )2022-12-15v41 / 20approvedNo
46amnonsmj: higher in mice feces with antiobiotics ( high in sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility male )2017-01-12v41 / 20approvedNo
446amnonlower in zebrafish larvae exposed to subclinical concentration of streptomycin compared to controls ( high in control compared to antibiotic streptomycin in fish zebrafish danio rerio research facility larvae age 15d united states of america )2019-01-08v41 / 25approvedNo
683amnoncommon during antibiotics treatment in feces (common metronidazole, vancomycin, neomycin, antibiotic, state of california, united states of america, adult, feces, homo sapiens)2028-03-04v41 / 25approvedNo
700amnon high in control compared to antibiotic tylosin phosphate in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 25approvedNo
46amnonsmj: lower in control mice feces than treated with antibiotics ( high in control compared to sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility male )2017-01-12v41 / 26approvedNo
46amnonsmj: higher in mice feces treated with antibiotics ( high in pulsed antibiotic treatment, macrolide tylosin tartrate antibiotic compared to control in feces male mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility )2017-01-12v41 / 28approvedNo
871amnon high in iga positive fraction compared to iga negative fraction in vancomycin antibiotic human adult stage amsterdam kingdom of the netherlands male adult homo sapiens feces 2022-02-19v31 / 35approvedNo
700amnon high in control compared to tylosin phosphate antibiotic in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 40approvedNo
321amnonhigher in mice treated with Metronidazole compared to untreated mice ( high in antibiotic metronidazole compared to control in mus musculus mouse c57bl/6j feces united states of america research facility )2018-04-22v41 / 44approvedNo
871amnonlower before antibiotic treatment compared to after treatment ( high in vancomycin antibiotic compared to before antibiotics in human adult stage amsterdam kingdom of the netherlands male adult homo sapiens feces )2022-02-19v31 / 44approvedNo
327amnonlower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )2018-04-30v41 / 45approvedNo
441amnonhigher after antibiotic treatment ( high in antibiotic cefoperazone compared to control in mus musculus mouse c57bl/6j feces research facility united states of america )2019-01-06v41 / 50approvedNo
321amnonhigher in mice treated with ampicillin compared to untreated mice ( high in ampicillin antibiotic compared to control in mus musculus mouse c57bl/6j feces united states of america research facility )2018-04-22v41 / 52approvedNo
683amnonhigher in antibiotic treatment (combined 3 antibiotics) compared to pre-treatment ( high in metronidazole vancomycin neomycin antibiotic compared to control in state of california united states of america adult feces homo sapiens )2028-03-04v41 / 55approvedNo
648amnon high in control compared to antibiotic metronidazole in united states of america dog canis lupus familiaris feces state of louisiana 2020-09-06v41 / 56approvedNo
399amnonhigher in ciprofloxacin treated mice compared to controls ( high in ciprofloxacin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 60approvedNo
902amnoncommon antibiotics induced colitis, antibiotic, colitis, colitis, adult organism, horse, equus caballus, united states of america, feces2022-05-02v41 / 68approvedNo
434amnonhigher in antibiotics treated rats compared to controls ( high in antibiotic neomycin ampicillin compared to control in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v41 / 80approvedNo
46amnonsmj: lower in control female mice than treated with antiobiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )2017-01-12v41 / 94approvedNo
632amnonhigher following metronidazole treatment in horse feces ( high in metronidazole compared to control in feces adult united states of america state of texas research facility horse equus caballus )2020-06-10v41 / 121approvedNo
399amnonlower in metronidazole treated mice compared to controls ( high in control compared to antibiotic metronidazole in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 127approvedNo
46amnonsmj: lower in mice feces controls than antibiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces male mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility )2017-01-12v41 / 134approvedNo
399amnonlower in ciprofloxacin treated mice compared to controls ( high in control compared to ciprofloxacin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 136approvedNo
902amnoncommon salmonella gastroenteritis, salmonellosis, adult organism, horse, equus caballus, antibiotic, united states of america, feces2022-05-02v41 / 158approvedNo
25amnon high in control compared to antibiotic in oryctolagus cuniculus caecum rex rabbit sichuan province research facility 2016-12-01v41 / 163approvedNo
321amnonlower in mice treated with Metronidazole compared to untreated mice ( high in control compared to antibiotic metronidazole in mus musculus mouse c57bl/6j feces united states of america research facility )2018-04-22v41 / 193approvedNo
399amnonlower in vancomycin treated mice compared to controls ( high in control compared to antibiotic vancomycin in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 225approvedNo
916amnon high in antimicrobial agent antibiotics supllemented diet antibiotic compared to normal diet control in rabbit age 2 months kingdom of spain oryctolagus cuniculus caecum research facility 2022-07-04v41 / 226approvedNo
25amnon high in antibiotic compared to control in oryctolagus cuniculus caecum rex rabbit sichuan province research facility 2016-12-01v41 / 231approvedNo
871amnonhigher before antibiotic treatment compared to after treatment ( high in before antibiotics compared to vancomycin antibiotic in human adult stage amsterdam kingdom of the netherlands feces male homo sapiens adult )2022-02-19v31 / 232approvedNo
434amnonlower in antibiotics treated rats compared to controls ( high in control compared to antibiotic neomycin ampicillin in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v41 / 238approvedNo
916amnon high in control diet control compared to antibiotics supllemented diet antibiotic in rabbit age 2 months kingdom of spain oryctolagus cuniculus caecum research facility 2022-07-04v41 / 246approvedNo
321amnonlower in mice treated with ampicillin compared to untreated mice ( high in control compared to ampicillin antibiotic in mus musculus mouse c57bl/6j feces united states of america research facility )2018-04-22v41 / 255approvedNo
399amnonlower in ampicillin treated mice compared to controls ( high in control compared to ampicillin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 263approvedNo
441amnonhigher before antibiotic treatment ( high in control compared to antibiotic cefoperazone in mus musculus mouse c57bl/6j feces research facility united states of america )2019-01-06v41 / 275approvedNo
683amnonlower in antibiotic treatment (combined 3 antibiotics) compared to pre-treatment ( high in control compared to metronidazole neomycin vancomycin antibiotic in state of california united states of america adult feces homo sapiens )2028-03-04v41 / 301approvedNo
902amnon high in colitis colitis antibiotics induced colitis antibiotic compared to control in adult organism horse equus caballus united states of america feces 2022-05-02v41 / 364approvedNo
399amnonlower in clindamycin treated mice compared to controls ( high in control compared to clindamycin antibiotic in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 394approvedNo
632amnonlower following metronidazole treatment in horse feces ( high in control compared to metronidazole in feces adult united states of america state of texas research facility horse equus caballus )2020-06-10v41 / 698approvedNo
902amnon high in control compared to antibiotics induced colitis antibiotic colitis colitis in adult organism united states of america feces horse equus caballus 2022-05-02v41 / 1755approvedNo

Problems / suggestions? Please email info AT dbbact DOT org