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Summary for ontology term: antibiotic
Number of annotations with term: 37
Annotations:
Annotations
F-Scores
Recall
Precision
term enrichment score
Term
Score
antibiotic
0.677966
LOWER IN antibiotic
0.605791
mus musculoides
0.301887
nyulmc
0.301887
nod/shiltj (no. 001976, jackson labs)
0.301887
caecum
0.244898
ampicillin
0.231214
male
0.187500
c57bl/6j
0.179104
rex rabbit
0.163265
research facility
0.153173
LOWER IN ampicillin
0.146341
rattus norvegicus
0.145455
sprague dawley
0.145455
neomycin
0.144578
oryctolagus cuniculus
0.140351
mouse
0.131783
sichuan province
0.131148
rat
0.123077
mus musculus
0.118158
LOWER IN control
0.113565
israel
0.106195
control
0.101003
LOWER IN metronidazole
0.097561
metronidazole
0.097561
pulsed antibiotic treatment, macrolide tylosin tartrate
0.097561
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate
0.097561
sub-therapeutic antibiotic treatment, penicillin v potassium salt
0.097561
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt
0.097561
zebrafish
0.097561
larvae
0.097561
age 15d
0.097561
canada
0.093023
danio rerio
0.081633
switzerland
0.081633
cow
0.075472
nasopharynx
0.070175
bos taurus
0.065574
fish
0.063492
feces
0.059089
probiotic
0.051282
LOWER IN cefoperazone
0.051282
cefoperazone
0.051282
LOWER IN ciprofloxacin
0.051282
ciprofloxacin
0.051282
LOWER IN clindamycin
0.051282
clindamycin
0.051282
LOWER IN vancomycin
0.051282
vancomycin
0.051282
LOWER IN streptomycin
0.051282
streptomycin
0.051282
LOWER IN neomycin
0.051282
united states of america
0.048282
female
0.041451
Fraction of dbbact annotations with this term covered by the query
Term
Score
antibiotic
0.909091
LOWER IN antibiotic
0.888889
ampicillin
0.800000
LOWER IN ampicillin
0.750000
neomycin
0.666667
LOWER IN metronidazole
0.500000
metronidazole
0.500000
probiotic
0.500000
pulsed antibiotic treatment, macrolide tylosin tartrate
0.500000
mus musculoides
0.500000
nyulmc
0.500000
nod/shiltj (no. 001976, jackson labs)
0.500000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate
0.500000
sub-therapeutic antibiotic treatment, penicillin v potassium salt
0.500000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt
0.500000
LOWER IN cefoperazone
0.500000
cefoperazone
0.500000
LOWER IN ciprofloxacin
0.500000
ciprofloxacin
0.500000
LOWER IN clindamycin
0.500000
clindamycin
0.500000
LOWER IN vancomycin
0.500000
vancomycin
0.500000
caecum
0.500000
zebrafish
0.500000
larvae
0.500000
age 15d
0.500000
LOWER IN streptomycin
0.500000
streptomycin
0.500000
LOWER IN neomycin
0.500000
canada
0.333333
rex rabbit
0.333333
male
0.222222
rattus norvegicus
0.222222
sprague dawley
0.222222
c57bl/6j
0.200000
oryctolagus cuniculus
0.200000
sichuan province
0.166667
danio rerio
0.166667
switzerland
0.166667
israel
0.153846
rat
0.142857
cow
0.125000
nasopharynx
0.100000
research facility
0.083333
bos taurus
0.083333
mouse
0.076923
fish
0.076923
mus musculus
0.067797
LOWER IN control
0.064286
control
0.056738
feces
0.030702
female
0.025641
united states of america
0.025000
Fraction of annotations for the query sequences containing the term
Term
Score
research facility
0.945946
feces
0.783784
united states of america
0.702703
antibiotic
0.540541
LOWER IN control
0.486486
mus musculus
0.459459
mouse
0.459459
control
0.459459
LOWER IN antibiotic
0.459459
mus musculoides
0.216216
nyulmc
0.216216
nod/shiltj (no. 001976, jackson labs)
0.216216
c57bl/6j
0.162162
male
0.162162
caecum
0.162162
ampicillin
0.135135
female
0.108108
oryctolagus cuniculus
0.108108
rex rabbit
0.108108
sichuan province
0.108108
rat
0.108108
rattus norvegicus
0.108108
sprague dawley
0.108108
LOWER IN ampicillin
0.081081
israel
0.081081
neomycin
0.081081
LOWER IN metronidazole
0.054054
metronidazole
0.054054
pulsed antibiotic treatment, macrolide tylosin tartrate
0.054054
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate
0.054054
sub-therapeutic antibiotic treatment, penicillin v potassium salt
0.054054
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt
0.054054
bos taurus
0.054054
cow
0.054054
nasopharynx
0.054054
canada
0.054054
fish
0.054054
zebrafish
0.054054
danio rerio
0.054054
larvae
0.054054
age 15d
0.054054
switzerland
0.054054
probiotic
0.027027
LOWER IN cefoperazone
0.027027
cefoperazone
0.027027
LOWER IN ciprofloxacin
0.027027
ciprofloxacin
0.027027
LOWER IN clindamycin
0.027027
clindamycin
0.027027
LOWER IN vancomycin
0.027027
vancomycin
0.027027
LOWER IN streptomycin
0.027027
streptomycin
0.027027
LOWER IN neomycin
0.027027
Exp. ID
User ID
Description
Date
Region
Flag
Sequences
385
amnon
colonize probiotic supplemented mice following antibiotics treatment ( high in probiotic compared to control in israel research facility mouse mus musculus feces antibiotic )
2018-10-23
v4
No
1 / 3
46
amnon
smj: higher in female mice feces treated with antibiotics ( high in sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )
2017-01-12
v4
No
1 / 3
327
amnon
higher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )
2018-04-30
v4
No
1 / 4
446
amnon
higher in zebrafish larvae exposed to subclinical concentration of streptomycin compared to controls ( high in antibiotic streptomycin compared to control in fish zebrafish danio rerio research facility larvae age 15d united states of america )
2019-01-08
v4
No
1 / 4
399
amnon
higher in clindamycin treated mice compared to controls ( high in clindamycin antibiotic compared to control in feces united states of america research facility mouse mus musculus )
2018-11-18
v4
No
1 / 5
399
amnon
higher in metronidazole treated mice compared to controls ( high in antibiotic metronidazole compared to control in feces united states of america research facility mouse mus musculus )
2018-11-18
v4
No
1 / 5
399
amnon
higher in vancomycin treated mice compared to controls ( high in antibiotic vancomycin compared to control in feces united states of america research facility mouse mus musculus )
2018-11-18
v4
No
1 / 5
25
amnon
high in antibiotic compared to control in oryctolagus cuniculus caecum rex rabbit sichuan province research facility
2016-12-01
v4
No
1 / 5
399
amnon
higher in ampicillin treated mice compared to controls ( high in ampicillin antibiotic compared to control in feces united states of america research facility mus musculus mouse )
2018-11-18
v4
No
1 / 8
46
amnon
smj: lower in female mice feces than treated with antibiotics ( high in control compared to sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )
2017-01-12
v4
No
1 / 10
25
amnon
high in control compared to antibiotic in oryctolagus cuniculus caecum rex rabbit sichuan province research facility
2016-12-01
v4
No
1 / 15
586
amnon
common rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin
2020-02-09
v4
No
1 / 15
46
amnon
smj: higher in female mice feces treated with antibiotics ( high in antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )
2017-01-12
v4
No
1 / 16
586
amnon
dominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin
2020-02-09
v4
No
1 / 16
46
amnon
smj: higher in mice feces with antiobiotics ( high in sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility male )
2017-01-12
v4
No
1 / 20
446
amnon
lower in zebrafish larvae exposed to subclinical concentration of streptomycin compared to controls ( high in control compared to antibiotic streptomycin in fish zebrafish danio rerio research facility larvae age 15d united states of america )
2019-01-08
v4
No
1 / 25
46
amnon
smj: lower in control mice feces than treated with antibiotics ( high in control compared to sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility male )
2017-01-12
v4
No
1 / 26
46
amnon
smj: higher in mice feces treated with antibiotics ( high in pulsed antibiotic treatment, macrolide tylosin tartrate antibiotic compared to control in feces male mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility )
2017-01-12
v4
No
1 / 28
321
amnon
higher in mice treated with Metronidazole compared to untreated mice ( high in antibiotic metronidazole compared to control in mus musculus mouse c57bl/6j feces united states of america research facility )
2018-04-22
v4
No
1 / 44
327
amnon
lower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )
2018-04-30
v4
No
1 / 45
441
amnon
higher after antibiotic treatment ( high in antibiotic cefoperazone compared to control in mus musculus mouse c57bl/6j feces research facility united states of america )
2019-01-06
v4
No
1 / 50
321
amnon
higher in mice treated with ampicillin compared to untreated mice ( high in ampicillin antibiotic compared to control in mus musculus mouse c57bl/6j feces united states of america research facility )
2018-04-22
v4
No
1 / 52
399
amnon
higher in ciprofloxacin treated mice compared to controls ( high in ciprofloxacin antibiotic compared to control in feces united states of america research facility mus musculus mouse )
2018-11-18
v4
No
1 / 60
434
amnon
higher in antibiotics treated rats compared to controls ( high in antibiotic neomycin ampicillin compared to control in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )
2018-12-20
v4
No
1 / 80
46
amnon
smj: lower in control female mice than treated with antiobiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )
2017-01-12
v4
No
1 / 94
399
amnon
lower in metronidazole treated mice compared to controls ( high in control compared to antibiotic metronidazole in feces united states of america research facility mouse mus musculus )
2018-11-18
v4
No
1 / 127
46
amnon
smj: lower in mice feces controls than antibiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces male mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility )
2017-01-12
v4
No
1 / 134
399
amnon
lower in ciprofloxacin treated mice compared to controls ( high in control compared to ciprofloxacin antibiotic in feces united states of america research facility mus musculus mouse )
2018-11-18
v4
No
1 / 136
25
amnon
high in control compared to antibiotic in oryctolagus cuniculus caecum rex rabbit sichuan province research facility
2016-12-01
v4
No
1 / 163
321
amnon
lower in mice treated with Metronidazole compared to untreated mice ( high in control compared to antibiotic metronidazole in mus musculus mouse c57bl/6j feces united states of america research facility )
2018-04-22
v4
No
1 / 193
399
amnon
lower in vancomycin treated mice compared to controls ( high in control compared to antibiotic vancomycin in feces united states of america research facility mouse mus musculus )
2018-11-18
v4
No
1 / 225
25
amnon
high in antibiotic compared to control in oryctolagus cuniculus caecum rex rabbit sichuan province research facility
2016-12-01
v4
No
1 / 231
434
amnon
lower in antibiotics treated rats compared to controls ( high in control compared to antibiotic neomycin ampicillin in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )
2018-12-20
v4
No
1 / 238
321
amnon
lower in mice treated with ampicillin compared to untreated mice ( high in control compared to ampicillin antibiotic in mus musculus mouse c57bl/6j feces united states of america research facility )
2018-04-22
v4
No
1 / 255
399
amnon
lower in ampicillin treated mice compared to controls ( high in control compared to ampicillin antibiotic in feces united states of america research facility mus musculus mouse )
2018-11-18
v4
No
1 / 263
441
amnon
higher before antibiotic treatment ( high in control compared to antibiotic cefoperazone in mus musculus mouse c57bl/6j feces research facility united states of america )
2019-01-06
v4
No
1 / 275
399
amnon
lower in clindamycin treated mice compared to controls ( high in control compared to clindamycin antibiotic in feces united states of america research facility mouse mus musculus )
2018-11-18
v4
No
1 / 394
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