Summary for ontology term: bangladesh

Number of annotations with term: 11

Top positive-associated sequence

Taxonomy Sequence Recall

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__StreptococcusTACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTGATAAGTCTGAAGTTAAAGGCTGTGGCTCAACCATAGTTCGCTTTGGAAACTGTCAAACTTGAGTGCAGAAGGGGAGAGTGG0.555556
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__BifidobacteriumTACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGTCCATCGCTTAACGGTGGATCCGCGCCGGGTACGGGCGGGCTTGAGTGCGGTAGGGGAGACTG0.555556
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__BifidobacteriumTACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGTCCATCGCTTAACGGTGGATCTGCGCCGGGTACGGGCGGGCTGGAGTGCGGTAGGGGAGACTG0.470588
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__StreptococcusTACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTAATAAGTCTGAAGTTAAAGGCAGTGGCTTAACCATTGTTCGCTTTGGAAACTGTTAGACTTGAGTGCAGAAGGGGAGAGTGG0.470588
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__EnterococcusTACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTCTTAAGTCTGATGTGAAAGCCCCCGGCTCAACCGGGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTG0.470588
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__BifidobacteriumTACGTAGGGCGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGCTCGTAGGCGGCTCGTCGCGTCCGGTGTGAAAGTCCATCGCTTAACGGTGGATCTGCGCCGGGTACGGGCGGGCTGGAGTGCGGTAGGGGAGACTG0.470588
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__Enterobacteriaceae;g__Escherichia/ShigellaTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTA0.470588
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Prevotellaceae";g__PrevotellaTACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGCGTGTTGTGAAATGTAGACGCTCAACGTCTGCACTGCAGCGCGAACTGGTTTCCTTGAGTACGCACAAAGTGGGCG0.375000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__BlautiaTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGTGGCAAGTCTGATGTGAAAGGCATGGGCTCAACCTGTGGACTGCATTGGAAACTGTCATACTTGAGTGCCGGAGGGGTAAGCG0.375000
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__LactobacillaceaeTACGTAGGTGGCGAGCGTTGTCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGAAGTAGTGCATTGGAAACTGGAAGACTTGAGTGCAGAAGAGGAGAGTG0.375000

Annotations:

common ontology terms
term enrichment score
TermScore
bangladesh0.800000
urban slum0.521739
dhaka0.521739
infant stage0.413793
diarrhea0.137931
under-1-year-old human stage0.136364
LOWER IN diarrhea0.125000
1-year-old human stage0.120000
LOWER IN under-1-year-old human stage0.095238
LOWER IN 1-year-old human stage0.090909
pathogen0.080000
infant0.055814
homo sapiens0.012308
feces0.010390
LOWER IN control0.009662
adult0.009581
control0.009434
Fraction of dbbact annotations with this term covered by the query
TermScore
bangladesh0.666667
urban slum0.500000
dhaka0.500000
infant stage0.333333
LOWER IN diarrhea0.200000
diarrhea0.111111
LOWER IN under-1-year-old human stage0.100000
LOWER IN 1-year-old human stage0.090909
under-1-year-old human stage0.090909
1-year-old human stage0.076923
pathogen0.071429
infant0.029412
homo sapiens0.006192
feces0.005222
LOWER IN control0.005102
control0.004975
adult0.004854
Fraction of annotations for the query sequences containing the term
TermScore
bangladesh1.000000
homo sapiens1.000000
feces1.000000
urban slum0.545455
infant stage0.545455
dhaka0.545455
infant0.545455
adult0.363636
1-year-old human stage0.272727
under-1-year-old human stage0.272727
diarrhea0.181818
pathogen0.090909
LOWER IN control0.090909
control0.090909
LOWER IN diarrhea0.090909
LOWER IN 1-year-old human stage0.090909
LOWER IN under-1-year-old human stage0.090909
Number of experiments associating the term to the sequence
TermScore
bangladesh2.000000
homo sapiens2.000000
feces2.000000
1-year-old human stage1.000000
urban slum1.000000
infant stage1.000000
dhaka1.000000
infant1.000000
pathogen1.000000
diarrhea1.000000
adult1.000000
LOWER IN control1.000000
control1.000000
LOWER IN diarrhea1.000000
LOWER IN 1-year-old human stage1.000000
under-1-year-old human stage1.000000
LOWER IN under-1-year-old human stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
121amnoncausitive agent for acute diarrhea (other pathogen, homo sapiens, feces, bangladesh, diarrhea)2017-04-13v41 / 1approvedNo
891amnondominant urban slum, under-1-year-old human stage, infant stage, dhaka, bangladesh, infant, homo sapiens, feces2022-04-03v41 / 7approvedNo
891amnoncommon under-1-year-old human stage, urban slum, infant stage, dhaka, bangladesh, infant, homo sapiens, feces2022-04-03v41 / 8approvedNo
891amnondominant urban slum, 1-year-old human stage, infant stage, dhaka, bangladesh, infant, homo sapiens, feces2022-04-03v41 / 14approvedNo
121amnondominant homo sapiens, feces, bangladesh, adult2017-04-13v41 / 19approvedNo
891amnoncommon 1-year-old human stage, urban slum, infant stage, dhaka, bangladesh, infant, homo sapiens, feces2022-04-03v41 / 25approvedNo
891amnon high in under-1-year-old human stage compared to 1-year-old human stage in infant infant stage urban slum homo sapiens feces dhaka bangladesh 2022-04-03v41 / 42approvedNo
121amnoncommon homo sapiens, feces, bangladesh, adult2017-04-13v41 / 50approvedNo
121amnonhigh in diarrhea compared to recovery period ( high in diarrhea compared to control in homo sapiens feces bangladesh adult )2017-04-13v41 / 162approvedNo
121amnonlow in diarrhea compared to recovery period ( high in control compared to diarrhea in homo sapiens feces bangladesh adult )2017-04-13v41 / 263approvedNo
891amnon high in 1-year-old human stage compared to under-1-year-old human stage in urban slum infant stage dhaka bangladesh infant homo sapiens feces 2022-04-03v41 / 363approvedNo

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