Summary for ontology term: biopsy

Number of annotations with term: 25

Annotations:

common ontology terms
term enrichment score
TermScore
biopsy0.856031
biopsy site0.614173
mucosa of stomach0.285714
sigmoid colon0.242424
children0.242424
rectum0.233333
terminal ileum0.216216
LOWER IN biopsy0.206897
LOWER IN biopsy site0.206897
south korea0.200000
caecum0.195122
helicobacter pylori infectious disease0.193548
left colon0.162162
right colon0.150000
LOWER IN feces0.146341
colon0.146341
ulcerative colitis0.130435
stomach0.105263
LOWER IN luminal content0.074074
luminal content0.074074
severe0.074074
LOWER IN mild0.074074
mild0.074074
LOWER IN severe0.074074
helicobacter pylori0.074074
LOWER IN left colon0.068966
child0.068376
LOWER IN right colon0.066667
LOWER IN rectum0.062500
LOWER IN ulcerative colitis0.062500
crohn's disease0.058824
LOWER IN crohn's disease0.058824
pathogen0.055556
homo sapiens0.053476
united states of america0.038835
feces0.023715
adult0.019002
LOWER IN control0.012121
control0.012048
Fraction of dbbact annotations with this term covered by the query
TermScore
biopsy0.833333
biopsy site0.750000
LOWER IN biopsy0.750000
LOWER IN biopsy site0.750000
LOWER IN luminal content0.500000
luminal content0.500000
mucosa of stomach0.500000
helicobacter pylori infectious disease0.500000
severe0.500000
LOWER IN mild0.500000
mild0.500000
LOWER IN severe0.500000
helicobacter pylori0.500000
sigmoid colon0.500000
children0.500000
terminal ileum0.333333
left colon0.250000
LOWER IN left colon0.250000
caecum0.250000
LOWER IN right colon0.200000
right colon0.200000
rectum0.200000
south korea0.200000
LOWER IN feces0.187500
LOWER IN rectum0.142857
ulcerative colitis0.142857
LOWER IN ulcerative colitis0.142857
crohn's disease0.111111
LOWER IN crohn's disease0.111111
colon0.105263
pathogen0.090909
stomach0.071429
child0.043478
homo sapiens0.027473
united states of america0.019900
feces0.013158
adult0.010101
LOWER IN control0.007143
control0.007092
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
biopsy0.880000
united states of america0.800000
biopsy site0.520000
rectum0.280000
colon0.240000
south korea0.200000
mucosa of stomach0.200000
stomach0.200000
adult0.160000
child0.160000
terminal ileum0.160000
sigmoid colon0.160000
caecum0.160000
children0.160000
LOWER IN feces0.120000
feces0.120000
LOWER IN biopsy0.120000
LOWER IN biopsy site0.120000
left colon0.120000
right colon0.120000
ulcerative colitis0.120000
helicobacter pylori infectious disease0.120000
LOWER IN luminal content0.040000
luminal content0.040000
LOWER IN right colon0.040000
LOWER IN left colon0.040000
LOWER IN rectum0.040000
severe0.040000
LOWER IN mild0.040000
mild0.040000
LOWER IN severe0.040000
LOWER IN ulcerative colitis0.040000
helicobacter pylori0.040000
pathogen0.040000
LOWER IN control0.040000
crohn's disease0.040000
control0.040000
LOWER IN crohn's disease0.040000
Exp. ID User ID Description Date Region Flag Sequences
409amnon high in right colon compared to left colon in homo sapiens united states of america colon biopsy biopsy site 2018-11-22v4No1 / 1
569amnonHelicobacter pylori pathogen (other homo sapiens, south korea, mucosa of stomach, stomach, biopsy, helicobacter pylori, pathogen, helicobacter pylori infectious disease)2019-12-16v3No1 / 1
410amnonhigher in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in severe ulcerative colitis compared to mild in homo sapiens child united states of america biopsy biopsy site rectum )2018-11-22v4No1 / 5
569amnonhigh freq. in gastric biopsies of patients positive for h. pylori (dominant homo sapiens, south korea, mucosa of stomach, stomach, biopsy, helicobacter pylori infectious disease)2019-12-16v3No1 / 5
569amnonhigh freq. in gastric biopsies of patients negative for h. pylori (dominant homo sapiens, south korea, mucosa of stomach, stomach, biopsy)2019-12-16v3No1 / 9
51amnonlower in stool compared to biopsies ( high in biopsy site biopsy compared to feces in homo sapiens united states of america )2017-01-19v4No1 / 14
409amnon high in left colon compared to right colon in homo sapiens united states of america colon biopsy biopsy site 2018-11-22v4No1 / 15
409amnondominant homo sapiens, united states of america, adult, left colon, biopsy, biopsy site2018-11-22v4No1 / 15
19amnonhigh freq in biopsies of children (IBD study) (dominant rectum, terminal ileum, sigmoid colon, caecum, colon, biopsy, children, homo sapiens, united states of america)2016-11-14v4No1 / 16
51amnondominant homo sapiens, biopsy site, biopsy, united states of america2017-01-19v4No1 / 16
409amnondominant homo sapiens, united states of america, adult, biopsy, biopsy site, right colon2018-11-22v4No1 / 20
410amnonlower in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to severe ulcerative colitis in homo sapiens child united states of america biopsy biopsy site rectum )2018-11-22v4No1 / 26
19amnonhigher in CD compared to control in biopsies ( high in crohn's disease compared to control in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-14v4No1 / 34
51amnonhigher in stool compared to biopsies ( high in feces compared to biopsy site biopsy in homo sapiens united states of america )2017-01-19v4No1 / 37
409amnonhigher in colon biopsies compared to stool and luminal content ( high in biopsy biopsy site compared to feces luminal content in homo sapiens united states of america )2018-11-22v4No1 / 38
51amnoncommon homo sapiens, biopsy site, biopsy, united states of america2017-01-19v4No1 / 38
19amnoncommon in biopsies of children (IBD study) (common rectum, terminal ileum, sigmoid colon, caecum, colon, biopsy, children, homo sapiens, united states of america)2016-11-14v4No1 / 40
409amnonlower in colon biopsies compared to stool and luminal content ( high in feces luminal content compared to biopsy biopsy site in homo sapiens united states of america )2018-11-22v4No1 / 42
569amnoncommon in gastric biopsies of patients positive for h. pylori (common homo sapiens, south korea, mucosa of stomach, stomach, biopsy, helicobacter pylori infectious disease)2019-12-16v3No1 / 77
569amnoncommon in gastric biopsies of patients negative for h. pylori (common homo sapiens, south korea, mucosa of stomach, stomach, biopsy)2019-12-16v3No1 / 85
409amnoncommon homo sapiens, united states of america, adult, biopsy, biopsy site, right colon2018-11-22v4No1 / 97
409amnoncommon homo sapiens, united states of america, adult, left colon, biopsy, biopsy site2018-11-22v4No1 / 118
410amnonlower in feces compared to rectal biopsies in children with treatment naive uc ( high in rectum biopsy biopsy site compared to feces in homo sapiens child united states of america ulcerative colitis )2018-11-22v4No1 / 118
410amnonhigher in feces compared to rectal biopsies in children with treatment naive uc ( high in feces compared to biopsy rectum biopsy site in homo sapiens child united states of america ulcerative colitis )2018-11-22v4No1 / 126
19amnonhigher in controls compared to CD in biopsies ( high in control compared to crohn's disease in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-14v4No1 / 459

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