Summary for ontology term: biopsy

Number of annotations with term: 20

Annotations:

common ontology terms
term enrichment score
TermScore
biopsy0.824242
biopsy site0.696429
terminal ileum0.285714
sigmoid colon0.285714
children0.285714
rectum0.271845
LOWER IN biopsy0.250000
LOWER IN biopsy site0.250000
left colon0.187500
right colon0.187500
LOWER IN feces0.176471
colon0.169014
ulcerative colitis0.146341
child0.095238
LOWER IN luminal content0.090909
luminal content0.090909
severe0.090909
LOWER IN mild0.090909
mild0.090909
LOWER IN severe0.090909
LOWER IN right colon0.083333
LOWER IN left colon0.083333
caecum0.076923
LOWER IN rectum0.076923
LOWER IN ulcerative colitis0.074074
crohn's disease0.068966
LOWER IN crohn's disease0.068966
homo sapiens0.054795
united states of america0.044693
feces0.028846
adult0.027778
LOWER IN control0.015152
control0.015038
Fraction of dbbact annotations with this term covered by the query
TermScore
biopsy0.800000
biopsy site0.750000
LOWER IN biopsy0.750000
LOWER IN biopsy site0.750000
LOWER IN luminal content0.500000
luminal content0.500000
terminal ileum0.500000
sigmoid colon0.500000
children0.500000
severe0.500000
LOWER IN mild0.500000
mild0.500000
LOWER IN severe0.500000
left colon0.250000
LOWER IN right colon0.250000
right colon0.250000
LOWER IN left colon0.250000
rectum0.222222
LOWER IN feces0.214286
LOWER IN rectum0.166667
ulcerative colitis0.142857
LOWER IN ulcerative colitis0.142857
colon0.117647
crohn's disease0.111111
LOWER IN crohn's disease0.111111
child0.062500
caecum0.047619
homo sapiens0.028169
united states of america0.022857
feces0.015957
adult0.014925
LOWER IN control0.008929
control0.008850
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
united states of america1.000000
biopsy0.850000
biopsy site0.650000
rectum0.350000
colon0.300000
adult0.200000
child0.200000
terminal ileum0.200000
sigmoid colon0.200000
caecum0.200000
children0.200000
LOWER IN feces0.150000
feces0.150000
LOWER IN biopsy0.150000
LOWER IN biopsy site0.150000
left colon0.150000
right colon0.150000
ulcerative colitis0.150000
LOWER IN luminal content0.050000
luminal content0.050000
LOWER IN right colon0.050000
LOWER IN left colon0.050000
LOWER IN rectum0.050000
severe0.050000
LOWER IN mild0.050000
mild0.050000
LOWER IN ulcerative colitis0.050000
LOWER IN severe0.050000
crohn's disease0.050000
LOWER IN control0.050000
control0.050000
LOWER IN crohn's disease0.050000
Exp. ID User ID Description Date Sequences
409amnon high in right colon compared to left colon in homo sapiens united states of america colon biopsy biopsy site 2018-11-221 / 1
410amnonhigher in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in ulcerative colitis severe compared to mild in homo sapiens child united states of america biopsy biopsy site rectum )2018-11-221 / 5
51amnonlower in stool compared to biopsies ( high in biopsy site biopsy compared to feces in homo sapiens united states of america )2017-01-191 / 14
409amnon high in left colon compared to right colon in homo sapiens united states of america colon biopsy biopsy site 2018-11-221 / 15
409amnonhighfreq homo sapiens, united states of america, adult, left colon, biopsy, biopsy site2018-11-221 / 15
19amnonhigh freq in biopsies of children (IBD study) (highfreq rectum, terminal ileum, sigmoid colon, caecum, colon, biopsy, children, homo sapiens, united states of america)2016-11-141 / 16
51amnonhighfreq homo sapiens, biopsy site, biopsy, united states of america2017-01-191 / 16
409amnonhighfreq homo sapiens, united states of america, adult, biopsy, biopsy site, right colon2018-11-221 / 20
410amnonlower in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to ulcerative colitis severe in homo sapiens child united states of america biopsy biopsy site rectum )2018-11-221 / 26
19amnonhigher in CD compared to control in biopsies ( high in crohn's disease compared to control in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-141 / 34
51amnonhigher in stool compared to biopsies ( high in feces compared to biopsy site biopsy in homo sapiens united states of america )2017-01-191 / 37
409amnonhigher in colon biopsies compared to stool and luminal content ( high in biopsy biopsy site compared to feces luminal content in homo sapiens united states of america )2018-11-221 / 38
51amnoncommon homo sapiens, biopsy site, biopsy, united states of america2017-01-191 / 38
19amnoncommon in biopsies of children (IBD study) (common rectum, terminal ileum, sigmoid colon, caecum, colon, biopsy, children, homo sapiens, united states of america)2016-11-141 / 40
409amnonlower in colon biopsies compared to stool and luminal content ( high in feces luminal content compared to biopsy biopsy site in homo sapiens united states of america )2018-11-221 / 42
409amnoncommon homo sapiens, united states of america, adult, biopsy, biopsy site, right colon2018-11-221 / 97
409amnoncommon homo sapiens, united states of america, adult, left colon, biopsy, biopsy site2018-11-221 / 118
410amnonlower in feces compared to rectal biopsies in children with treatment naive uc ( high in rectum biopsy biopsy site compared to feces in homo sapiens child united states of america ulcerative colitis )2018-11-221 / 118
410amnonhigher in feces compared to rectal biopsies in children with treatment naive uc ( high in feces compared to biopsy rectum biopsy site in homo sapiens child united states of america ulcerative colitis )2018-11-221 / 126
19amnonhigher in controls compared to CD in biopsies ( high in control compared to crohn's disease in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-141 / 459

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