Summary for ontology term: biopsy

Number of annotations with term: 27

Annotations:

common ontology terms
term enrichment score
TermScore
biopsy0.872727
biopsy site0.586466
sigmoid colon0.333333
colon0.333333
terminal ileum0.307692
mucosa of stomach0.270270
children0.228571
rectum0.225806
LOWER IN biopsy0.193548
LOWER IN biopsy site0.193548
ulcerative colitis0.181818
helicobacter pylori infectious disease0.166667
left colon0.153846
right colon0.142857
caecum0.135593
LOWER IN feces0.130435
south korea0.129870
stomach0.093458
LOWER IN luminal content0.068966
luminal content0.068966
severe0.068966
LOWER IN mild0.068966
mild0.068966
LOWER IN severe0.068966
helicobacter pylori0.068966
germany0.067797
LOWER IN left colon0.064516
LOWER IN right colon0.062500
LOWER IN rectum0.058824
LOWER IN ulcerative colitis0.058824
LOWER IN crohn's disease0.054054
crohn's disease0.052632
child0.051613
pathogen0.050000
homo sapiens0.049793
united states of america0.034572
feces0.019934
adult0.013445
LOWER IN control0.010695
control0.010638
Fraction of dbbact annotations with this term covered by the query
TermScore
biopsy0.857143
biopsy site0.750000
LOWER IN biopsy0.750000
LOWER IN biopsy site0.750000
sigmoid colon0.666667
colon0.666667
terminal ileum0.500000
LOWER IN luminal content0.500000
luminal content0.500000
ulcerative colitis0.500000
mucosa of stomach0.500000
severe0.500000
LOWER IN mild0.500000
mild0.500000
LOWER IN severe0.500000
helicobacter pylori0.500000
children0.500000
helicobacter pylori infectious disease0.333333
left colon0.250000
LOWER IN left colon0.250000
LOWER IN right colon0.200000
right colon0.200000
rectum0.200000
LOWER IN feces0.157895
LOWER IN rectum0.142857
LOWER IN ulcerative colitis0.142857
caecum0.125000
south korea0.100000
LOWER IN crohn's disease0.100000
crohn's disease0.090909
pathogen0.076923
germany0.062500
stomach0.062500
child0.031250
homo sapiens0.025532
united states of america0.017699
feces0.010949
adult0.007042
LOWER IN control0.006250
control0.006211
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
biopsy0.888889
united states of america0.740741
biopsy site0.481481
rectum0.259259
sigmoid colon0.222222
terminal ileum0.222222
colon0.222222
south korea0.185185
mucosa of stomach0.185185
stomach0.185185
adult0.148148
child0.148148
caecum0.148148
children0.148148
LOWER IN feces0.111111
feces0.111111
LOWER IN biopsy0.111111
LOWER IN biopsy site0.111111
left colon0.111111
right colon0.111111
ulcerative colitis0.111111
helicobacter pylori infectious disease0.111111
germany0.074074
LOWER IN luminal content0.037037
luminal content0.037037
LOWER IN right colon0.037037
LOWER IN left colon0.037037
LOWER IN rectum0.037037
severe0.037037
LOWER IN mild0.037037
mild0.037037
LOWER IN severe0.037037
LOWER IN ulcerative colitis0.037037
helicobacter pylori0.037037
pathogen0.037037
LOWER IN control0.037037
crohn's disease0.037037
control0.037037
LOWER IN crohn's disease0.037037
Exp. ID User ID Description Date Region Flag Sequences
409amnon high in right colon compared to left colon in homo sapiens united states of america colon biopsy biopsy site 2018-11-22v4No1 / -7
569amnonHelicobacter pylori pathogen (other homo sapiens, south korea, mucosa of stomach, stomach, biopsy, helicobacter pylori, pathogen, helicobacter pylori infectious disease)2019-12-16v3No1 / -7
410amnonhigher in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in severe ulcerative colitis compared to mild in homo sapiens child united states of america biopsy biopsy site rectum )2018-11-22v4No1 / -3
569amnonhigh freq. in gastric biopsies of patients positive for h. pylori (dominant homo sapiens, south korea, mucosa of stomach, stomach, biopsy, helicobacter pylori infectious disease)2019-12-16v3No1 / -3
569amnonhigh freq. in gastric biopsies of patients negative for h. pylori (dominant homo sapiens, south korea, mucosa of stomach, stomach, biopsy)2019-12-16v3No1 / 1
51amnonlower in stool compared to biopsies ( high in biopsy site biopsy compared to feces in homo sapiens united states of america )2017-01-19v4No1 / 6
409amnon high in left colon compared to right colon in homo sapiens united states of america colon biopsy biopsy site 2018-11-22v4No1 / 7
409amnondominant homo sapiens, united states of america, adult, left colon, biopsy, biopsy site2018-11-22v4No1 / 7
19amnonhigh freq in biopsies of children (IBD study) (dominant rectum, terminal ileum, sigmoid colon, caecum, colon, biopsy, children, homo sapiens, united states of america)2016-11-14v4No1 / 8
51amnondominant homo sapiens, biopsy site, biopsy, united states of america2017-01-19v4No1 / 8
409amnondominant homo sapiens, united states of america, adult, biopsy, biopsy site, right colon2018-11-22v4No1 / 12
714amnondominant germany, biopsy, sigmoid colon, terminal ileum, homo sapiens2028-05-21v3No1 / 18
410amnonlower in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to severe ulcerative colitis in homo sapiens child united states of america biopsy biopsy site rectum )2018-11-22v4No1 / 18
19amnonhigher in CD compared to control in biopsies ( high in crohn's disease compared to control in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-14v4No1 / 26
51amnonhigher in stool compared to biopsies ( high in feces compared to biopsy site biopsy in homo sapiens united states of america )2017-01-19v4No1 / 29
409amnonhigher in colon biopsies compared to stool and luminal content ( high in biopsy biopsy site compared to feces luminal content in homo sapiens united states of america )2018-11-22v4No1 / 30
51amnoncommon homo sapiens, biopsy site, biopsy, united states of america2017-01-19v4No1 / 30
19amnoncommon in biopsies of children (IBD study) (common rectum, terminal ileum, sigmoid colon, caecum, colon, biopsy, children, homo sapiens, united states of america)2016-11-14v4No1 / 32
714amnoncommon germany, biopsy, sigmoid colon, terminal ileum, homo sapiens2028-05-21v3No1 / 33
409amnonlower in colon biopsies compared to stool and luminal content ( high in feces luminal content compared to biopsy biopsy site in homo sapiens united states of america )2018-11-22v4No1 / 34
569amnoncommon in gastric biopsies of patients positive for h. pylori (common homo sapiens, south korea, mucosa of stomach, stomach, biopsy, helicobacter pylori infectious disease)2019-12-16v3No1 / 69
569amnoncommon in gastric biopsies of patients negative for h. pylori (common homo sapiens, south korea, mucosa of stomach, stomach, biopsy)2019-12-16v3No1 / 77
409amnoncommon homo sapiens, united states of america, adult, biopsy, biopsy site, right colon2018-11-22v4No1 / 89
409amnoncommon homo sapiens, united states of america, adult, left colon, biopsy, biopsy site2018-11-22v4No1 / 110
410amnonlower in feces compared to rectal biopsies in children with treatment naive uc ( high in rectum biopsy biopsy site compared to feces in homo sapiens child united states of america ulcerative colitis )2018-11-22v4No1 / 110
410amnonhigher in feces compared to rectal biopsies in children with treatment naive uc ( high in feces compared to biopsy rectum biopsy site in homo sapiens child united states of america ulcerative colitis )2018-11-22v4No1 / 118
19amnonhigher in controls compared to CD in biopsies ( high in control compared to crohn's disease in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-14v4No1 / 451

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