Summary for ontology term: cecal content

Number of annotations with term: 32

Top positive-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCTGGCAAGTCTGATGTGAAAGGCAGGGGCTCAACTCCTGGACTGCATTGGAAACTGTCAGTCTTGAGTGTCGGAGAGGTAAGCGGAATTCCTAG0.031250
d__Bacteria;p__"Bacteroidetes"TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGCCCTGTAAGTCAGCGGTTAAATCGTGGAGCTCAACTCCATCCCGCCGTTGATACTGCAGGGCTTGATTGCGGTCGAGGTTGGCGGAATTCGCCGT0.031250
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGTGTAGGTGGTTTGGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGCGGACTGCATTTGGAACTGTTAAACTTGAGTGCAGGAGAGGAAAGTGGAATTCCTA0.031250
d__Bacteria;p__"Bacteroidetes"TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGTCTTTTAAGTCAGTGGTTAAATCGTGGAGCTTAACTCCATCCCGCCATTGATACTGGAGGACTTGATTGCGGTTGAGGTTGGCGGAATTCGCCGT0.031250
d__BacteriaTACAGAGGTCGCAAGCGTTGTTCGGATTTACTGGGCGTAAAGGGCGCGTAGGCGGCATTGCGTGTCAAGTGTGAAATCTCCGGGCTCAACCCGGAAAGTGCGCTTGAAACTACAATGCTCGAGTCTGGGAGAGGGAATCGGAATGCAGGG0.031250
d__BacteriaTACGGAAGGTCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAGATGCAAGCCAGCCGTAAAATCGTGGGGCTCAACCCCATTCAGCGGTTGGAACTTCATCCCTTGATTGCGGCAGAGGGAGGTGGAACTCGTGGT0.031250
d__Bacteria;p__"Bacteroidetes"TACGGAAGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGCCTTTAAGTCAGTGGTCAAAGCGTGTGGCTCAACCATACCACGCCGTTGATACTGGAGGCCTTGAGTGCACATAAGGATGGTGGAATTCATGGT0.031250
d__Bacteria;p__"Bacteroidetes"TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGCGTGCTAAGTCAGCGGTTAAATAGTGAGGCTCAACCTCATCCCGCCGTTGATACTGGCATGCTTGATTGCGGTCGAGGTTGGCGGAATTCGCCGT0.031250
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGTAGGCGGGGATGCAAGTCAGATGTGAAATCTATGGGCTCAACTCATAAACTGCATTTGAAACTGTATCTCTTGAGTGCTGGAGAGGTAGATGGAATTCCTTG0.031250
d__Bacteria;p__"Bacteroidetes"TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGCTTTTAAGTCAGTGGTAAAAGCGTGTGGCTCAACCATACCACGCCATTGAAACTGGAAGCCTTGAGTGCACACAGGGATGCTGGAATTCGTCGT0.031250

Top negative-associated sequence

Taxonomy Sequence Recall
d__BacteriaTACGTAGGGGGCGAGCGTTGTCCGGAATGACTGGGCGTAAAGGGCGTGTAGGCGGTTTTTTAAGTATGAAGTGAAATCCCAGCTTTCAAGGTTGGGTCTGCTTTGTAGACTGGAAGACTTGAGTGCGGAAGAGGTAAGTGGAATTCCCAG0.500000
d__Bacteria;p__"Bacteroidetes"TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGAAGTCAAGTCAGCTGTGAAATGTAGACGCTCAACGTCTGCACTGCAGTTGAAACTGGTTTTCTTGAGTGCGTAAGAGGCAGGCGGAATTCGTCG0.500000
d__BacteriaTACAGAGGTCGCAAGCGTTGTTCGGATTTACTGGGCGTAAAGGGCGCGTAGGCGGCATTGCGTGTCAGATGTGAAATCTCCGGGCTCAACCCGGAAAGTGCGTCTGAAACTACAATGCTCGAGTCTGGGAGAGGGAATCGGAATATAGGG0.500000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTTAAGTCAGCGGTCAAATTGTGTAGCTCAACTATACCGAGCCGTTGAAACTGGCGTTCTTGAGTGTAAACGAGGTAGGCGGAATGTGACGT0.500000
d__Bacteria;p__"Bacteroidetes"TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGAAGGTCAAGTCAGCTGTGAAATGTAGTCGCTCAACGTCTGCACTGCAGTTGAAACTGGCCTCCTTGAGTGCGTAAGAGGCAGGCGGAATTCGTCG0.500000
d__BacteriaTACGGAGGATACGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGATCGGTAAGTCATGGGTGAAAAGTTGGGGCTCAACTCCAATCGTGCCTATGATACTGCCGGACTAGAGTGCAAGCGACGTAACTGGAATGTGGTG0.500000
d__BacteriaGACGAACTGCTCTAACGTTATTCGGAATCACTGGGCTTAAAGGGCGCGTAGGCTGTTGGTCAAGCAGGGTTTGAAATCCCTCGGCTCAACCGAGGAACTGGGCTCTGAACTGGTCGACTAGAGTGAAGCAGGGGCAAGCGGAACTTGCGG0.500000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGAGTATCAAGTCAGCTGTGAAATGTAGTCGCTCAACGTCTGCACTGCAGTTGAAACTGGTACCCTTGAGTGCGTAAGAGGTAGGCGGAATTCGTCG0.500000
d__BacteriaTACGTAGGGGACAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGCGCGTAGGCGGGATGTTAAGTCTGATGTGAAAGGTTACGGCTCAACCGTAGACATGCATTGGAAACTGGCATTCTTGAGTACTGGAGAGGCAAGTGGAATTCCTAG0.500000
d__BacteriaTACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGCGTTCGTAGGCTGTATATCAAGTCTGGTGTTAAAGCCCGGGGCTCAACTCCGGTTCGGCACTGGATACTGGTAAACTAGAATGCGGTAGAGGTGAAGGGAATTCCTGG0.500000

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__FirmicutesTGGGGGATATTGCACAATGGGCGAAAGCCTGATGCAGCAACGCCGCGTGAGGGAAGACGGTTTTCGGATTGTAAACCTCTGTTCTAAGTGACGAAGAATGACGGTAGCTTAGGAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT0.341463
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAGATGACGGTACCTGAGTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.326531
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTTATGAGGGACGAAGGACGTGACGGTACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCG0.320000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGCGAGGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAAATGACGGTACCTGCACAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.307692
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAGAATGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.307692
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTAGCGTGAAGGAAGACGGCCCTACGGGTTGTAAACTTCTTTTATACGGGAATAAGAACGTCCACGGGTGGATGCGTGCATGTACCGTATGAATAAGCATCGGCTAACT0.307692
d__Bacteria;p__"Bacteroidetes"TGAGGAATATTGGACAATGGATGGAAATCTGATCCAGCCATGCCGCGTGCAGGAAGGCGGTCCTATGGATTGTAAACTGCTTTTGTACGGGAGCAATAATTTCTACGGGATAGGGAGATGAGAGTACCGTACGAATCAGCATCGGCTAAC0.304348
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGGTGAAGAAGTATTTCGGTATGTAAAGCCCTATCAGCAGGGAAGAAGGAAGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT0.285714
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGAGGAATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAAGGATGAAGGCCCTTGGGTCGTAAACTTCTGTTCTAAGGGAAGATAGTGACGGTACCTTAGGAGCAAGTCCCGGCTAACTACGTGCCAGCAGCCGCGGTA0.263158
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTTATTGGGGACGAAACAAATGACGGTACCCGATGAATAAGCTCCGGCTAACTACGTGCCAGCAGCCGCG0.263158

Annotations:

common ontology terms
Fraction of dbbact annotations with this term covered by the query
TermScore
cecal content0.833333
LOWER IN bronchitis0.500000
LOWER IN infectious bronchitis virus0.500000
bronchitis0.500000
infectious bronchitis virus0.500000
hyplus rabbit0.500000
exclusive breastmilk diet0.500000
LOWER IN soild food supplemented diet0.500000
LOWER IN solid food diet0.500000
soild food supplemented diet0.500000
solid food diet0.500000
LOWER IN exclusive breastmilk diet0.500000
age 9 months0.500000
ovariectomized female0.500000
LOWER IN ovariectomized female0.500000
LOWER IN tibetan pig0.500000
LOWER IN tibetan swine0.500000
tibetan pig0.500000
tibetan swine0.500000
LOWER IN age 5 weeks0.333333
juvenile0.333333
age 5 weeks0.333333
ovariectomy0.333333
LOWER IN ovariectomy0.333333
tibet autonomous region0.333333
age 3 weeks0.250000
rabbit0.250000
LOWER IN age 3 weeks0.250000
LOWER IN nicotine dependence0.250000
nicotine dependence0.250000
LOWER IN cecal content0.166667
caecum0.138889
state of texas0.125000
oryctolagus cuniculus0.125000
equus caballus0.111111
horse0.111111
french republic0.076923
chicken0.062500
sus scrofa0.062500
pig0.062500
LOWER IN sus scrofa0.062500
LOWER IN pig0.062500
gallus gallus0.058824
canada0.040000
LOWER IN male0.030303
male0.030303
LOWER IN caecum0.027778
farm0.027778
research facility0.027211
mouse0.017544
mus musculus0.015873
female0.015873
LOWER IN female0.015873
china0.011628
control0.010811
LOWER IN control0.010811
adult0.005780
united states of america0.004049
feces0.003185
LOWER IN feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
caecum0.968750
cecal content0.968750
research facility0.812500
china0.312500
oryctolagus cuniculus0.312500
french republic0.312500
rabbit0.312500
juvenile0.312500
hyplus rabbit0.312500
mus musculus0.250000
mouse0.250000
canada0.250000
age 9 months0.250000
exclusive breastmilk diet0.218750
age 5 weeks0.218750
farm0.187500
tibet autonomous region0.187500
gallus gallus0.125000
chicken0.125000
united states of america0.125000
adult0.125000
equus caballus0.125000
state of texas0.125000
horse0.125000
control0.093750
LOWER IN control0.093750
age 3 weeks0.093750
soild food supplemented diet0.093750
solid food diet0.093750
female0.093750
sus scrofa0.093750
pig0.093750
tibetan pig0.093750
tibetan swine0.093750
LOWER IN bronchitis0.031250
LOWER IN infectious bronchitis virus0.031250
bronchitis0.031250
infectious bronchitis virus0.031250
feces0.031250
LOWER IN caecum0.031250
LOWER IN cecal content0.031250
LOWER IN feces0.031250
LOWER IN age 5 weeks0.031250
LOWER IN age 3 weeks0.031250
LOWER IN soild food supplemented diet0.031250
LOWER IN solid food diet0.031250
LOWER IN exclusive breastmilk diet0.031250
LOWER IN nicotine dependence0.031250
nicotine dependence0.031250
ovariectomy0.031250
ovariectomized female0.031250
LOWER IN ovariectomy0.031250
LOWER IN ovariectomized female0.031250
LOWER IN male0.031250
male0.031250
LOWER IN female0.031250
LOWER IN tibetan pig0.031250
LOWER IN tibetan swine0.031250
LOWER IN sus scrofa0.031250
LOWER IN pig0.031250
Exp. ID User ID Description Date Region Flag Sequences
604amnon high in bronchitis infectious bronchitis virus compared to control in research facility caecum gallus gallus chicken cecal content china 2020-04-06v3No1 / 2
632amnondominant united states of america, research facility, caecum, adult, equus caballus, state of texas, cecal content, horse2020-06-10v4No1 / 7
604amnondominant research facility, caecum, gallus gallus, chicken, cecal content, china2020-04-06v3No1 / 13
611amnon high in male compared to female in research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v4No1 / 13
604amnon high in control compared to bronchitis infectious bronchitis virus in research facility caecum gallus gallus chicken cecal content china 2020-04-06v3No1 / 16
314amnondominant farm, caecum, tibet autonomous region, cecal content, tibetan pig, tibetan swine, china2018-04-10v4No1 / 16
611amnondominant research facility, caecum, mus musculus, mouse, cecal content, canada, age 9 months2020-04-21v4No1 / 17
853amnondominant research facility, oryctolagus cuniculus, french republic, cecal content, rabbit, caecum, juvenile, age 5 weeks, hyplus rabbit, soild food supplemented diet, solid food diet2021-12-20v3No1 / 21
611amnon high in ovariectomy ovariectomized female compared to control in female research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v4No1 / 22
611amnon high in control compared to ovariectomy ovariectomized female in female research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v4No1 / 22
853amnon high in age 3 weeks compared to age 5 weeks in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile hyplus rabbit exclusive breastmilk diet 2021-12-18v3No1 / 23
314amnondominant farm, caecum, sus scrofa, tibet autonomous region, pig, cecal content, china2018-04-10v4No1 / 23
853amnondominant research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, age 3 weeks, juvenile, hyplus rabbit, exclusive breastmilk diet2021-12-18v3No1 / 24
853amnondominant research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, juvenile, age 5 weeks, hyplus rabbit, exclusive breastmilk diet2021-12-20v3No1 / 24
611amnon high in female compared to male in research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v4No1 / 33
611amnonhigher in feces of mice exposed to cigarette smoke for 6 months compared to controls ( high in nicotine dependence compared to control in research facility caecum mus musculus mouse cecal content canada age 9 months )2020-04-21v4No1 / 45
853amnon high in exclusive breastmilk diet compared to soild food supplemented diet solid food diet in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile age 5 weeks hyplus rabbit 2021-12-20v3No1 / 47
853amnon high in age 5 weeks compared to age 3 weeks in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile hyplus rabbit exclusive breastmilk diet 2021-12-18v3No1 / 49
611amnonlower in feces of mice exposed to cigarette smoke for 6 months compared to controls ( high in control compared to nicotine dependence in research facility caecum mus musculus mouse cecal content canada age 9 months )2020-04-21v4No1 / 66
853amnon high in soild food supplemented diet solid food diet compared to exclusive breastmilk diet in research facility oryctolagus cuniculus french republic cecal content rabbit caecum juvenile age 5 weeks hyplus rabbit 2021-12-20v3No1 / 71
853amnoncommon research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, age 3 weeks, juvenile, hyplus rabbit, exclusive breastmilk diet2021-12-18v3No1 / 82
853amnoncommon research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, juvenile, age 5 weeks, hyplus rabbit, exclusive breastmilk diet2021-12-20v3No1 / 96
853amnoncommon research facility, oryctolagus cuniculus, french republic, cecal content, rabbit, caecum, juvenile, age 5 weeks, hyplus rabbit, soild food supplemented diet, solid food diet2021-12-20v3No1 / 114
314amnon high in sus scrofa pig compared to tibetan pig tibetan swine in farm caecum tibet autonomous region cecal content china 2018-04-10v4No1 / 136
611amnoncommon research facility, caecum, mus musculus, mouse, cecal content, canada, age 9 months2020-04-21v4No1 / 145
314amnon high in tibetan pig tibetan swine compared to sus scrofa pig in farm caecum tibet autonomous region cecal content china 2018-04-10v4No1 / 157
604amnoncommon research facility, caecum, gallus gallus, chicken, cecal content, china2020-04-06v3No1 / 185
314amnoncommon farm, caecum, sus scrofa, tibet autonomous region, pig, cecal content, china2018-04-10v4No1 / 402
314amnoncommon farm, caecum, tibet autonomous region, cecal content, tibetan pig, tibetan swine, china2018-04-10v4No1 / 467
632amnon high in feces compared to caecum cecal content in united states of america research facility adult equus caballus state of texas horse 2020-06-10v4No1 / 897
632amnoncommon united states of america, research facility, caecum, adult, equus caballus, state of texas, cecal content, horse2020-06-10v4No1 / 914
632amnon high in caecum cecal content compared to feces in united states of america research facility adult equus caballus state of texas horse 2020-06-10v4No1 / 943

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