Summary for ontology term: chicken

Number of annotations with term: 50

Annotations:

common ontology terms
term enrichment score
TermScore
gallus gallus1.000000
chicken1.000000
broiler chicken0.504425
free range chicken0.342105
caecum0.224824
age 2 weeks0.142857
kingdom of spain0.140127
cecal content0.137931
farm0.134021
age 4 weeks0.133333
united kingdom0.131148
age 6 weeks0.129032
age 3 weeks0.129032
austria0.108108
viet nam0.107143
thailand0.101695
age0.076433
age 3 days0.074074
age 4 days0.074074
age 12 weeks0.074074
age 14-28 days0.074074
campylobacter0.074074
LOWER IN campylobacter0.074074
age 15 - 35 days0.074074
old age0.072727
LOWER IN young age0.072727
age 8 weeks0.071429
young age0.070175
LOWER IN old age0.070175
LOWER IN control0.046243
control0.045977
LOWER IN typhlitis0.038462
LOWER IN intestinal disease0.038462
typhlitis0.038462
intestinal disease0.038462
LOWER IN free range chicken0.038462
LOWER IN broiler chicken0.038462
LOWER IN vaccination0.038462
LOWER IN salmune vaccination0.038462
salmune vaccination0.038462
LOWER IN viet nam0.038462
vaccination0.037736
LOWER IN thailand0.037736
LOWER IN disease0.037037
disease0.035714
LOWER IN age0.035714
feces0.026510
china0.018265
research facility0.017621
united states of america0.009983
Fraction of dbbact annotations with this term covered by the query
TermScore
gallus gallus1.000000
chicken1.000000
broiler chicken0.750000
age 2 weeks0.666667
cecal content0.500000
age 3 days0.500000
free range chicken0.500000
age 4 days0.500000
age 12 weeks0.500000
LOWER IN typhlitis0.500000
LOWER IN intestinal disease0.500000
typhlitis0.500000
intestinal disease0.500000
LOWER IN free range chicken0.500000
LOWER IN broiler chicken0.500000
viet nam0.500000
LOWER IN vaccination0.500000
LOWER IN salmune vaccination0.500000
salmune vaccination0.500000
age 14-28 days0.500000
LOWER IN viet nam0.500000
campylobacter0.500000
LOWER IN campylobacter0.500000
age 15 - 35 days0.500000
age 4 weeks0.400000
old age0.400000
LOWER IN young age0.400000
age 6 weeks0.333333
age 3 weeks0.333333
age 8 weeks0.333333
vaccination0.333333
thailand0.333333
LOWER IN thailand0.333333
young age0.285714
LOWER IN old age0.285714
LOWER IN disease0.250000
disease0.166667
austria0.166667
LOWER IN age0.166667
caecum0.136364
united kingdom0.111111
age0.105263
kingdom of spain0.083333
farm0.076923
LOWER IN control0.030075
control0.029851
feces0.013761
china0.010309
research facility0.009901
united states of america0.005208
Fraction of annotations for the query sequences containing the term
TermScore
gallus gallus1.000000
chicken1.000000
caecum0.640000
farm0.520000
kingdom of spain0.440000
broiler chicken0.380000
feces0.360000
free range chicken0.260000
united kingdom0.160000
united states of america0.120000
control0.100000
LOWER IN control0.100000
research facility0.080000
china0.080000
cecal content0.080000
age 2 weeks0.080000
age 4 weeks0.080000
age 6 weeks0.080000
age 3 weeks0.080000
austria0.080000
viet nam0.060000
age0.060000
thailand0.060000
age 3 days0.040000
age 4 days0.040000
age 8 weeks0.040000
age 12 weeks0.040000
young age0.040000
LOWER IN old age0.040000
old age0.040000
LOWER IN young age0.040000
age 14-28 days0.040000
campylobacter0.040000
LOWER IN campylobacter0.040000
age 15 - 35 days0.040000
LOWER IN bronchitis0.020000
LOWER IN infectious bronchitis virus0.020000
bronchitis0.020000
infectious bronchitis virus0.020000
LOWER IN typhlitis0.020000
LOWER IN disease0.020000
LOWER IN intestinal disease0.020000
typhlitis0.020000
disease0.020000
intestinal disease0.020000
LOWER IN free range chicken0.020000
LOWER IN broiler chicken0.020000
LOWER IN vaccination0.020000
LOWER IN salmune vaccination0.020000
vaccination0.020000
salmune vaccination0.020000
LOWER IN thailand0.020000
LOWER IN viet nam0.020000
LOWER IN age0.020000
Exp. ID User ID Description Date Region Flag Sequences
604amnon high in bronchitis infectious bronchitis virus compared to control in research facility china caecum cecal content gallus gallus chicken 2020-04-06v3No1 / 2
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v4No1 / 2
127amnonhigh in young (0-3 days) compared to old (28 day) chickens ( high in age young age compared to old age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 3
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 4
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 6
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 9
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 10
495amnondominant gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 12
604amnondominant research facility, china, caecum, cecal content, gallus gallus, chicken2020-04-06v3No1 / 13
568amnondominant viet nam, broiler chicken, feces, chicken, gallus gallus2019-12-08v3No1 / 15
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 15
604amnon high in control compared to bronchitis infectious bronchitis virus in research facility china caecum cecal content gallus gallus chicken 2020-04-06v3No1 / 16
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 16
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 18
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 19
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 20
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 21
568amnondominant thailand, broiler chicken, feces, chicken, gallus gallus2019-12-08v3No1 / 23
379amnondominant gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v4No1 / 25
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 27
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 27
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 28
127amnondominant gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 28
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 33
127amnonhigher in vaccinated chickens ( high in vaccination salmune vaccination compared to control in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 34
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 39
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 47
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 48
127amnoncommon gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 51
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 69
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 69
127amnonhigher in non-vaccinated chickens ( high in control compared to vaccination salmune vaccination in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 72
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 90
127amnonhigh in old (14-28 days) compared to young (0-3 day) chickens ( high in age old age compared to young age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 98
568amnon high in viet nam compared to thailand in broiler chicken feces chicken gallus gallus 2019-12-08v3No1 / 119
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 134
379amnoncommon gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v4No1 / 160
604amnoncommon research facility, china, caecum, cecal content, gallus gallus, chicken2020-04-06v3No1 / 185
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 185
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 189
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 199
568amnon high in thailand compared to viet nam in broiler chicken feces chicken gallus gallus 2019-12-08v3No1 / 206
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 210
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 214
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 236
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 271
568amnoncommon viet nam, broiler chicken, feces, chicken, gallus gallus2019-12-08v3No1 / 272
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 290
568amnoncommon thailand, broiler chicken, feces, chicken, gallus gallus2019-12-08v3No1 / 320
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 412

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