Summary for ontology term: chicken

Number of annotations with term: 40

Annotations:

common ontology terms
term enrichment score
TermScore
gallus gallus0.888889
chicken0.888889
broiler chicken0.436975
free range chicken0.393939
age 2 weeks0.173913
kingdom of spain0.169231
caecum0.167665
age 4 weeks0.160000
farm0.159509
age 6 weeks0.153846
age 3 weeks0.153846
united kingdom0.142857
austria0.125000
age 3 days0.090909
age 4 days0.090909
age 12 weeks0.090909
age 14-28 days0.090909
campylobacter0.090909
LOWER IN campylobacter0.090909
age 15 - 35 days0.090909
old age0.088889
LOWER IN young age0.088889
age0.087591
age 8 weeks0.086957
young age0.085106
LOWER IN old age0.085106
LOWER IN typhlitis0.047619
LOWER IN intestinal disease0.047619
typhlitis0.047619
intestinal disease0.047619
LOWER IN free range chicken0.047619
LOWER IN broiler chicken0.047619
LOWER IN vaccination0.047619
LOWER IN salmune vaccination0.047619
salmune vaccination0.047619
vaccination0.046512
LOWER IN disease0.045455
disease0.043478
LOWER IN age0.043478
LOWER IN control0.040268
control0.040000
feces0.019640
united states of america0.010601
Fraction of dbbact annotations with this term covered by the query
TermScore
gallus gallus0.800000
chicken0.800000
broiler chicken0.666667
age 2 weeks0.666667
age 3 days0.500000
free range chicken0.500000
age 4 days0.500000
age 12 weeks0.500000
LOWER IN typhlitis0.500000
LOWER IN intestinal disease0.500000
typhlitis0.500000
intestinal disease0.500000
LOWER IN free range chicken0.500000
LOWER IN broiler chicken0.500000
LOWER IN vaccination0.500000
LOWER IN salmune vaccination0.500000
salmune vaccination0.500000
age 14-28 days0.500000
campylobacter0.500000
LOWER IN campylobacter0.500000
age 15 - 35 days0.500000
age 4 weeks0.400000
old age0.400000
LOWER IN young age0.400000
age 6 weeks0.333333
age 3 weeks0.333333
age 8 weeks0.333333
vaccination0.333333
young age0.285714
LOWER IN old age0.285714
LOWER IN disease0.250000
disease0.166667
austria0.166667
LOWER IN age0.166667
united kingdom0.111111
age0.105263
kingdom of spain0.100000
caecum0.095238
farm0.090909
LOWER IN control0.025210
control0.025000
feces0.010152
united states of america0.005495
Fraction of annotations for the query sequences containing the term
TermScore
gallus gallus1.000000
chicken1.000000
caecum0.700000
farm0.650000
kingdom of spain0.550000
broiler chicken0.325000
free range chicken0.325000
feces0.300000
united kingdom0.200000
united states of america0.150000
age 2 weeks0.100000
age 4 weeks0.100000
age 6 weeks0.100000
age 3 weeks0.100000
control0.100000
LOWER IN control0.100000
austria0.100000
age0.075000
age 3 days0.050000
age 4 days0.050000
age 8 weeks0.050000
age 12 weeks0.050000
young age0.050000
LOWER IN old age0.050000
old age0.050000
LOWER IN young age0.050000
age 14-28 days0.050000
campylobacter0.050000
LOWER IN campylobacter0.050000
age 15 - 35 days0.050000
LOWER IN typhlitis0.025000
LOWER IN disease0.025000
LOWER IN intestinal disease0.025000
typhlitis0.025000
disease0.025000
intestinal disease0.025000
LOWER IN free range chicken0.025000
LOWER IN broiler chicken0.025000
LOWER IN vaccination0.025000
LOWER IN salmune vaccination0.025000
vaccination0.025000
salmune vaccination0.025000
LOWER IN age0.025000
Exp. ID User ID Description Date Region Flag Sequences
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus united kingdom chicken )2018-09-14v4No1 / 2
127amnonhigh in young (0-3 days) compared to old (28 day) chickens ( high in age young age compared to old age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 3
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 4
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 6
497amnonhighfreq chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 9
497amnonhighfreq chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 10
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 12
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 15
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 16
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 18
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 19
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 20
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 21
379amnonhighfreq gallus gallus, chicken, feces, united kingdom, age 15 - 35 days2018-09-14v4No1 / 25
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 27
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 27
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 28
127amnonhighfreq gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 28
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 33
127amnonhigher in vaccinated chickens ( high in vaccination salmune vaccination compared to control in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 34
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 39
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 47
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 48
127amnoncommon gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 51
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 69
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 69
127amnonhigher in non-vaccinated chickens ( high in control compared to vaccination salmune vaccination in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 72
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 90
127amnonhigh in old (14-28 days) compared to young (0-3 day) chickens ( high in age old age compared to young age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 98
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 134
379amnoncommon gallus gallus, chicken, feces, united kingdom, age 15 - 35 days2018-09-14v4No1 / 160
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 185
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 189
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 199
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 210
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 214
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 236
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 271
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 290
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 412

Problems / suggestions? Please email info AT dbbact DOT org