Summary for ontology term: chicken

Number of annotations with term: 140

Top positive-associated sequence

Taxonomy Sequence Recall

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__RoseburiaTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGCGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAACTGACGGTACCTGACTAAGAAGCACCGGCTAAATACGTGCCAGCAGCCGCGGTA0.366667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__FaecalibacteriumTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGAGGAAGAAGGTCTTCGGATTGTAAACTCCTGTTGTTGGGGAAAAGAAGGATGGTACCCAACAAGGAAGTGACGGCTAACTACGTGCCAGCAGCCGCGGTA0.318182
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__IntestinimonasTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCCCTCGGGTTGTAAACTTCTTTTGTCAGGGACGAAGCAAGTGACGGTACCTGACGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCG0.316940
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGCGGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGCCATGCTGGAGTGCTGGAGAGGTAAGTGGAATTCCTAG0.312139
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGAAGCAAGTCTGGAGTGAAAACCCGGGGCTTAACCCCGGGATTGCTTTGGAAACTGTTTAACTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAG0.305085
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__LactobacillusTAGGGAATCTTCCACAATGGACGCAAGTCTGATGGAGCAACGCCGCGTGAGTGAAGAAGGTTTTCGGATCGTAAAGCTCTGTTGTTGGTGAAGAAGGATAGAGGTAGTAACTGGCCTTTATTTGACGGTAATCAACCAGAAAGTCACGGC0.293578
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__EnterococcusTAGGGAATCTTCGGCAATGGACGCAAGTCTGACCGAGCAACGCCGCGTGAGTGAAGAAGGTTTTCGGATCGTAAAACTCTGTTGTTAGAGAAGAACAAGGATGAGAGTGGAAAGTTCATCCCTTGACGGTATCTAACCAGAAAGCCACGG0.290503
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGCGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAGAAAGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT0.289157
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTACGTAGGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGCAGGCGGGCCGGCAAGTTGGGAGTGAAATCCGGGGGCTTAACCCCCGAACTGCTTTCAAAACTGCTGGTCTTGAGTGATGGAGAGGCAGGCGGAATTCCGTG0.284211
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGATTGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGCAGTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAG0.284211

Annotations:

common ontology terms
term enrichment score
TermScore
chicken1.027027
gallus gallus1.000000
broiler chicken0.422601
caecum0.414793
hen0.240000
age 35 days0.173913
age 35 weeks0.170213
state of indiana0.157895
free range chicken0.156627
cobb broiler chicken0.146341
ileum0.144578
research facility0.140945
age 5 weeks0.129032
age 4 weeks0.125000
digesta0.114286
jejunum0.104956
united kingdom0.101124
age 1 week0.100000
male organism0.092308
farm0.083736
age 7 weeks0.082192
wuhan0.082192
age 90 weeks0.078947
jinzhou city prefecture0.078947
age 3 weeks0.078947
adelaide0.078947
kingdom of spain0.073090
cloaca0.071856
hawaii0.070588
male0.067164
age 30 days0.064516
LOWER IN caecum0.059113
LOWER IN ileum0.058824
china0.055221
age 2 weeks0.054795
great britain0.054054
adult organism0.053571
age 42 days0.052632
liverpool0.052632
mucosa0.050633
germany0.049080
age 6 weeks0.048780
cecal content0.047619
austria0.045455
lumen of jejunum0.041958
jejunal mucosa0.041958
feral0.041096
age 15-20 weeks0.041096
isa brown0.041096
layer chicken0.041096
ileal mucosa0.041096
LOWER IN broiler chicken0.040541
viet nam0.040268
australia0.039735
small intestine0.037975
thailand0.037267
age0.034985
control0.034483
LOWER IN control0.034483
duodenum0.033520
captive0.029557
LOWER IN age 5 weeks0.027972
uterine tube infundibulum0.027778
campylobacter0.027778
LOWER IN campylobacter0.027778
age 15 - 35 days0.027778
age 42 weeks0.027778
jinghong-10.027778
age 3 days0.027778
age 4 days0.027778
age 12 weeks0.027778
LOWER IN high wellfare feed0.027778
high wellfare feed0.027778
lethbridge0.027778
age 60 weeks0.027778
age 14-28 days0.027778
LOWER IN age 1 week0.027586
wild0.027523
standard feed0.027397
LOWER IN standard feed0.027397
LOWER IN age 3 weeks0.027027
age 8 weeks0.027027
young age0.026846
LOWER IN old age0.026846
old age0.026846
LOWER IN young age0.026846
intestinal contents0.026667
LOWER IN digesta0.025974
LOWER IN cloaca0.025316
vagina0.024691
female organism0.023810
LOWER IN mucosa0.021739
canada0.020000
feces0.016290
united states of america0.014569
LOWER IN avilamycin0.014184
avilamycin0.014184
LOWER IN virginiamycin0.014184
virginiamycin0.014184
LOWER IN jejunal mucosa0.014184
Fraction of dbbact annotations with this term covered by the query
TermScore
chicken1.055556
gallus gallus1.000000
state of indiana1.000000
LOWER IN avilamycin1.000000
avilamycin1.000000
LOWER IN virginiamycin1.000000
virginiamycin1.000000
lumen of jejunum1.000000
LOWER IN jejunal mucosa1.000000
age 7 weeks1.000000
wuhan1.000000
LOWER IN lumen of jejunum1.000000
jejunal mucosa1.000000
broiler chicken0.875000
hen0.750000
LOWER IN age 5 weeks0.666667
age 5 weeks0.666667
age 2 weeks0.666667
age 35 days0.666667
feral0.500000
age 15-20 weeks0.500000
uterine tube infundibulum0.500000
age 90 weeks0.500000
jinzhou city prefecture0.500000
age 3 weeks0.500000
campylobacter0.500000
LOWER IN campylobacter0.500000
age 15 - 35 days0.500000
LOWER IN infectious bronchitis virus0.500000
infectious bronchitis virus0.500000
LOWER IN isa brown0.500000
LOWER IN layer chicken0.500000
age 4 weeks0.500000
adelaide0.500000
isa brown0.500000
layer chicken0.500000
age 42 weeks0.500000
jinghong-10.500000
age 3 days0.500000
free range chicken0.500000
age 4 days0.500000
age 12 weeks0.500000
LOWER IN typhlitis0.500000
typhlitis0.500000
LOWER IN free range chicken0.500000
LOWER IN high wellfare feed0.500000
high wellfare feed0.500000
cobb broiler chicken0.500000
great britain0.500000
lethbridge0.500000
ileal mucosa0.500000
LOWER IN ileal mucosa0.500000
age 60 weeks0.500000
LOWER IN salmune vaccination0.500000
salmune vaccination0.500000
age 14-28 days0.500000
LOWER IN feral0.500000
LOWER IN age 15-20 weeks0.500000
age 1 week0.400000
LOWER IN age 1 week0.400000
LOWER IN broiler chicken0.375000
LOWER IN bronchitis0.333333
bronchitis0.333333
LOWER IN age 30 days0.333333
age 30 days0.333333
standard feed0.333333
LOWER IN standard feed0.333333
age 42 days0.333333
liverpool0.333333
viet nam0.333333
LOWER IN viet nam0.333333
age 35 weeks0.333333
LOWER IN vaccination0.333333
vaccination0.333333
caecum0.309524
jejunum0.285714
digesta0.285714
LOWER IN age 3 weeks0.250000
age 8 weeks0.250000
young age0.222222
LOWER IN old age0.222222
old age0.222222
LOWER IN young age0.222222
cloaca0.222222
ileum0.222222
hawaii0.200000
intestinal contents0.200000
small intestine0.166667
LOWER IN small intestine0.166667
age 6 weeks0.166667
LOWER IN ileum0.166667
LOWER IN jejunum0.142857
cecal content0.142857
thailand0.142857
LOWER IN thailand0.142857
LOWER IN digesta0.142857
austria0.111111
LOWER IN cloaca0.111111
male organism0.100000
LOWER IN caecum0.095238
Fraction of annotations for the query sequences containing the term
TermScore
chicken1.000000
gallus gallus1.000000
caecum0.628571
research facility0.578571
broiler chicken0.278571
china0.185714
farm0.185714
kingdom of spain0.157143
hen0.142857
united states of america0.128571
feces0.128571
united kingdom0.128571
male0.128571
germany0.114286
age 35 weeks0.114286
ileum0.107143
age 35 days0.100000
free range chicken0.092857
state of indiana0.085714
male organism0.085714
cobb broiler chicken0.085714
age 5 weeks0.071429
age 4 weeks0.071429
digesta0.071429
jejunum0.064286
age 1 week0.057143
mucosa0.057143
control0.050000
LOWER IN control0.050000
hawaii0.042857
age 90 weeks0.042857
adult organism0.042857
jinzhou city prefecture0.042857
LOWER IN caecum0.042857
age 3 weeks0.042857
adelaide0.042857
australia0.042857
cloaca0.042857
age 7 weeks0.042857
wuhan0.042857
age 30 days0.035714
LOWER IN ileum0.035714
cecal content0.028571
age 2 weeks0.028571
age 6 weeks0.028571
austria0.028571
age 42 days0.028571
liverpool0.028571
great britain0.028571
feral0.021429
wild0.021429
age 15-20 weeks0.021429
LOWER IN broiler chicken0.021429
captive0.021429
duodenum0.021429
small intestine0.021429
age0.021429
isa brown0.021429
layer chicken0.021429
viet nam0.021429
thailand0.021429
ileal mucosa0.021429
lumen of jejunum0.021429
jejunal mucosa0.021429
LOWER IN age 5 weeks0.014286
uterine tube infundibulum0.014286
LOWER IN age 3 weeks0.014286
LOWER IN age 1 week0.014286
campylobacter0.014286
LOWER IN campylobacter0.014286
young age0.014286
LOWER IN old age0.014286
old age0.014286
LOWER IN young age0.014286
age 15 - 35 days0.014286
age 42 weeks0.014286
jinghong-10.014286
age 3 days0.014286
age 4 days0.014286
age 8 weeks0.014286
age 12 weeks0.014286
vagina0.014286
standard feed0.014286
LOWER IN high wellfare feed0.014286
LOWER IN standard feed0.014286
high wellfare feed0.014286
LOWER IN cloaca0.014286
lethbridge0.014286
canada0.014286
LOWER IN mucosa0.014286
LOWER IN digesta0.014286
intestinal contents0.014286
female organism0.014286
age 60 weeks0.014286
age 14-28 days0.014286
LOWER IN research facility0.007143
LOWER IN captive0.007143
LOWER IN jejunum0.007143
LOWER IN duodenum0.007143
LOWER IN small intestine0.007143
Number of experiments associating the term to the sequence
TermScore
chicken19.000000
gallus gallus19.000000
caecum13.000000
research facility13.000000
broiler chicken7.000000
china6.000000
control5.000000
LOWER IN control5.000000
LOWER IN caecum4.000000
ileum4.000000
LOWER IN broiler chicken3.000000
feces3.000000
age 4 weeks3.000000
hen3.000000
LOWER IN ileum3.000000
LOWER IN age 5 weeks2.000000
age 5 weeks2.000000
jejunum2.000000
age 1 week2.000000
united states of america2.000000
LOWER IN age 1 week2.000000
age 3 weeks2.000000
united kingdom2.000000
young age2.000000
LOWER IN old age2.000000
age2.000000
old age2.000000
LOWER IN young age2.000000
male2.000000
cloaca2.000000
farm2.000000
age 2 weeks2.000000
age 35 days2.000000
digesta2.000000
hawaii1.000000
feral1.000000
wild1.000000
age 15-20 weeks1.000000
LOWER IN research facility1.000000
LOWER IN captive1.000000
captive1.000000
uterine tube infundibulum1.000000
age 90 weeks1.000000
adult organism1.000000
jinzhou city prefecture1.000000
duodenum1.000000
small intestine1.000000
LOWER IN jejunum1.000000
LOWER IN duodenum1.000000
LOWER IN small intestine1.000000
state of indiana1.000000
male organism1.000000
LOWER IN age 3 weeks1.000000
LOWER IN avilamycin1.000000
avilamycin1.000000
LOWER IN virginiamycin1.000000
virginiamycin1.000000
campylobacter1.000000
LOWER IN campylobacter1.000000
age 15 - 35 days1.000000
cecal content1.000000
LOWER IN infectious bronchitis virus1.000000
LOWER IN bronchitis1.000000
infectious bronchitis virus1.000000
bronchitis1.000000
LOWER IN isa brown1.000000
LOWER IN layer chicken1.000000
adelaide1.000000
australia1.000000
isa brown1.000000
layer chicken1.000000
age 42 weeks1.000000
jinghong-11.000000
age 3 days1.000000
kingdom of spain1.000000
age 6 weeks1.000000
free range chicken1.000000
age 4 days1.000000
age 8 weeks1.000000
age 12 weeks1.000000
LOWER IN typhlitis1.000000
typhlitis1.000000
LOWER IN free range chicken1.000000
vagina1.000000
austria1.000000
LOWER IN age 30 days1.000000
age 30 days1.000000
standard feed1.000000
LOWER IN high wellfare feed1.000000
LOWER IN standard feed1.000000
high wellfare feed1.000000
cobb broiler chicken1.000000
LOWER IN cloaca1.000000
age 42 days1.000000
liverpool1.000000
great britain1.000000
lethbridge1.000000
canada1.000000
viet nam1.000000
thailand1.000000
LOWER IN thailand1.000000
LOWER IN viet nam1.000000
ileal mucosa1.000000
mucosa1.000000
germany1.000000
age 35 weeks1.000000
LOWER IN ileal mucosa1.000000
LOWER IN mucosa1.000000
LOWER IN digesta1.000000
lumen of jejunum1.000000
LOWER IN jejunal mucosa1.000000
age 7 weeks1.000000
wuhan1.000000
LOWER IN lumen of jejunum1.000000
jejunal mucosa1.000000
intestinal contents1.000000
female organism1.000000
age 60 weeks1.000000
LOWER IN vaccination1.000000
LOWER IN salmune vaccination1.000000
vaccination1.000000
salmune vaccination1.000000
age 14-28 days1.000000
LOWER IN feral1.000000
LOWER IN age 15-20 weeks1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
963amnon high in virginiamycin compared to control in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana age 5 weeks 2022-12-21v41 / 2approvedNo
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v41 / 2approvedNo
604amnon high in infectious bronchitis virus bronchitis compared to control in caecum chicken gallus gallus cecal content china research facility 2020-04-06v31 / 2approvedNo
127amnonhigh in young (0-3 days) compared to old (28 day) chickens ( high in age young age compared to old age in gallus gallus chicken united states of america caecum )2017-04-14v41 / 3approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v41 / 4approvedNo
963amnon high in avilamycin compared to control in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana age 5 weeks 2022-12-21v41 / 5approvedNo
795amnoncommon uterine tube infundibulum, age 90 weeks, adult organism, research facility, china, gallus gallus, chicken2021-06-08v41 / 6approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v41 / 6approvedNo
963amnon high in control compared to virginiamycin in age 5 weeks state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-21v41 / 7approvedNo
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v41 / 9approvedNo
744amnondominant ileum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 9approvedNo
780amnondominant jinzhou city prefecture, china, research facility, chicken, gallus gallus, jejunum, duodenum, small intestine2021-04-28v31 / 10approvedNo
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v41 / 10approvedNo
808amnondominant caecum, digesta, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 10approvedNo
808amnondominant caecum, mucosa, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 11approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v41 / 12approvedNo
604amnondominant caecum, chicken, gallus gallus, cecal content, china, research facility2020-04-06v31 / 13approvedNo
795amnoncommon vagina, age 90 weeks, adult organism, research facility, china, gallus gallus, chicken2021-06-08v41 / 13approvedNo
808amnondominant ileal mucosa, mucosa, ileum, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 13approvedNo
622amnondominant caecum, age 42 days, research facility, liverpool, great britain, chicken, gallus gallus2020-05-08v41 / 14approvedNo
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v41 / 15approvedNo
568amnondominant gallus gallus, chicken, feces, broiler chicken, viet nam2019-12-08v31 / 15approvedNo
808amnondominant digesta, ileum, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 15approvedNo
934amnondominant age 7 weeks, wuhan, china, jejunal mucosa, chicken, gallus gallus, jejunum, research facility2022-09-18v31 / 15approvedNo
934amnondominant age 7 weeks, wuhan, china, lumen of jejunum, chicken, gallus gallus, jejunum, research facility2022-09-18v31 / 15approvedNo
604amnon high in control compared to infectious bronchitis virus bronchitis in caecum chicken gallus gallus cecal content china research facility 2020-04-06v31 / 16approvedNo
904amnondominant age 42 weeks, jinghong-1, hen, china, chicken, gallus gallus, caecum, research facility2022-05-18v31 / 16approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v41 / 16approvedNo
738amnon high in high wellfare feed compared to standard feed in caecum age 1 week united kingdom chicken gallus gallus 2021-01-30v31 / 16approvedNo
776amnondominant caecum, broiler chicken, research facility, captive, age 5 weeks, gallus gallus, chicken, hawaii2021-04-25v31 / 17approvedNo
897amnondominant adelaide, broiler chicken, age 4 weeks, chicken, australia, male, gallus gallus, caecum, research facility2022-04-18v31 / 17approvedNo
897amnondominant isa brown, layer chicken, adelaide, age 4 weeks, chicken, australia, male, gallus gallus, caecum, research facility2022-04-18v31 / 17approvedNo
780amnondominant caecum, jinzhou city prefecture, china, research facility, chicken, gallus gallus2021-04-28v31 / 18approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v41 / 18approvedNo
744amnondominant cloaca, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 18approvedNo
795amnondominant cloaca, age 90 weeks, adult organism, research facility, china, gallus gallus, chicken2021-06-08v41 / 18approvedNo
963amnondominant chicken, gallus gallus, caecum, research facility, male organism, broiler chicken, united states of america, state of indiana, age 1 week2022-12-20v41 / 19approvedNo
963amnondominant chicken, gallus gallus, caecum, research facility, male organism, broiler chicken, united states of america, state of indiana, age 5 weeks2022-12-21v41 / 19approvedNo
795amnoncommon cloaca, age 90 weeks, adult organism, research facility, china, gallus gallus, chicken2021-06-08v41 / 19approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v41 / 19approvedNo
738amnondominant caecum, age 30 days, united kingdom, chicken, gallus gallus2021-01-30v31 / 19approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v41 / 20approvedNo
818amnondominant ileum, intestinal contents, digesta, female organism, research facility, china, age 60 weeks, hen, gallus gallus, chicken2021-07-10v31 / 20approvedNo
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v41 / 21approvedNo
744amnondominant caecum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 21approvedNo
795amnondominant uterine tube infundibulum, age 90 weeks, adult organism, research facility, china, gallus gallus, chicken2021-06-08v41 / 22approvedNo
963amnon high in control compared to avilamycin in age 5 weeks state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-21v41 / 23approvedNo
795amnondominant vagina, age 90 weeks, adult organism, research facility, china, gallus gallus, chicken2021-06-08v41 / 23approvedNo
738amnondominant caecum, age 1 week, united kingdom, chicken, gallus gallus2021-01-30v31 / 23approvedNo
568amnondominant gallus gallus, chicken, feces, broiler chicken, thailand2019-12-08v31 / 23approvedNo
934amnon high in lumen of jejunum compared to jejunal mucosa in jejunum age 7 weeks wuhan research facility gallus gallus chicken china 2022-09-18v31 / 23approvedNo
756amnondominant caecum, lethbridge, age 35 days, canada, broiler chicken, research facility, gallus gallus, chicken2021-03-22v41 / 24approvedNo
379amnondominant gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v41 / 25approvedNo
776amnondominant caecum, wild, feral, age 15-20 weeks, gallus gallus, chicken, hawaii2021-04-25v31 / 26approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v41 / 27approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v41 / 27approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v41 / 28approvedNo
738amnon high in high wellfare feed compared to standard feed in caecum age 30 days united kingdom chicken gallus gallus 2021-01-30v31 / 28approvedNo
127amnondominant gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v41 / 28approvedNo
622amnon high in ileum compared to caecum in age 42 days research facility liverpool great britain chicken gallus gallus 2020-05-08v41 / 29approvedNo
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v41 / 33approvedNo
127amnonhigher in vaccinated chickens ( high in vaccination salmune vaccination compared to control in gallus gallus chicken united states of america caecum )2017-04-14v41 / 34approvedNo
897amnon high in broiler chicken compared to isa brown layer chicken in male caecum age 4 weeks adelaide research facility australia gallus gallus chicken 2022-04-18v31 / 35approvedNo
963amnon high in age 1 week compared to age 3 weeks in state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-20v41 / 36approvedNo
744amnoncommon ileum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 38approvedNo
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v41 / 39approvedNo
738amnon high in standard feed compared to high wellfare feed in caecum age 1 week united kingdom chicken gallus gallus 2021-01-30v31 / 43approvedNo
738amnon high in standard feed compared to high wellfare feed in caecum age 30 days united kingdom chicken gallus gallus 2021-01-30v31 / 45approvedNo
818amnoncommon ileum, intestinal contents, digesta, female organism, research facility, china, age 60 weeks, hen, gallus gallus, chicken2021-07-10v31 / 45approvedNo
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in gallus gallus chicken feces united kingdom )2018-09-14v41 / 47approvedNo
744amnon high in ileum compared to cloaca in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 47approvedNo
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v41 / 48approvedNo
127amnoncommon gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v41 / 51approvedNo
897amnon high in isa brown layer chicken compared to broiler chicken in adelaide age 4 weeks chicken australia male gallus gallus caecum research facility 2022-04-18v31 / 52approvedNo
963amnon high in age 3 weeks compared to age 5 weeks in state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-20v41 / 58approvedNo
808amnoncommon ileal mucosa, mucosa, ileum, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 58approvedNo
738amnoncommon caecum, age 1 week, united kingdom, chicken, gallus gallus2021-01-30v31 / 64approvedNo
738amnon high in age 1 week compared to age 30 days in caecum united kingdom chicken gallus gallus 2021-01-30v31 / 68approvedNo
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in gallus gallus chicken feces united kingdom )2018-09-14v41 / 69approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v41 / 69approvedNo
744amnon high in cloaca compared to caecum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 70approvedNo
808amnoncommon digesta, ileum, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 72approvedNo
934amnon high in jejunal mucosa compared to lumen of jejunum in age 7 weeks wuhan china chicken gallus gallus jejunum research facility 2022-09-18v31 / 72approvedNo
127amnonhigher in non-vaccinated chickens ( high in control compared to vaccination salmune vaccination in gallus gallus chicken united states of america caecum )2017-04-14v41 / 72approvedNo
934amnoncommon lumen of jejunum, age 7 weeks, wuhan, china, chicken, gallus gallus, jejunum, research facility2022-09-18v31 / 73approvedNo
963amnoncommon age 1 week, state of indiana, united states of america, broiler chicken, male organism, research facility, caecum, gallus gallus, chicken2022-12-20v41 / 74approvedNo
904amnoncommon age 42 weeks, research facility, china, jinghong-1, hen, caecum, gallus gallus, chicken2022-05-18v31 / 89approvedNo
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v41 / 90approvedNo
127amnonhigh in old (14-28 days) compared to young (0-3 day) chickens ( high in age old age compared to young age in gallus gallus chicken united states of america caecum )2017-04-14v41 / 98approvedNo
776amnon high in feral wild age 15-20 weeks compared to age 5 weeks research facility broiler chicken captive in caecum hawaii chicken gallus gallus 2021-04-25v31 / 107approvedNo
963amnon high in age 5 weeks compared to age 3 weeks in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana 2022-12-20v41 / 109approvedNo
744amnoncommon cloaca, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 114approvedNo
568amnon high in viet nam compared to thailand in gallus gallus chicken feces broiler chicken 2019-12-08v31 / 119approvedNo
744amnon high in ileum compared to caecum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 121approvedNo
934amnoncommon jejunal mucosa, age 7 weeks, wuhan, china, chicken, gallus gallus, jejunum, research facility2022-09-18v31 / 127approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v41 / 134approvedNo
897amnoncommon broiler chicken, adelaide, age 4 weeks, chicken, australia, male, gallus gallus, caecum, research facility2022-04-18v31 / 136approvedNo
744amnoncommon caecum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 141approvedNo
897amnoncommon isa brown, layer chicken, adelaide, age 4 weeks, chicken, australia, male, gallus gallus, caecum, research facility2022-04-18v31 / 144approvedNo
780amnon high in jejunum duodenum small intestine compared to caecum in jinzhou city prefecture china research facility chicken gallus gallus 2021-04-28v31 / 153approvedNo
379amnoncommon gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v41 / 160approvedNo
963amnoncommon age 5 weeks, state of indiana, united states of america, broiler chicken, male organism, research facility, caecum, gallus gallus, chicken2022-12-21v41 / 171approvedNo
604amnoncommon caecum, chicken, gallus gallus, cecal content, china, research facility2020-04-06v31 / 185approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v41 / 185approvedNo
744amnon high in caecum compared to cloaca in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 187approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v41 / 189approvedNo
776amnoncommon caecum, wild, feral, age 15-20 weeks, gallus gallus, chicken, hawaii2021-04-25v31 / 191approvedNo
808amnon high in digesta compared to ileal mucosa mucosa in ileum germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 192approvedNo
963amnon high in age 3 weeks compared to age 1 week in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana 2022-12-20v41 / 196approvedNo
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v41 / 199approvedNo
738amnoncommon caecum, age 30 days, united kingdom, chicken, gallus gallus2021-01-30v31 / 202approvedNo
568amnon high in thailand compared to viet nam in gallus gallus chicken feces broiler chicken 2019-12-08v31 / 206approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v41 / 210approvedNo
780amnon high in caecum compared to jejunum duodenum small intestine in jinzhou city prefecture china research facility chicken gallus gallus 2021-04-28v31 / 212approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v41 / 214approvedNo
808amnon high in ileum compared to caecum in digesta germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 224approvedNo
780amnoncommon jinzhou city prefecture, china, research facility, chicken, gallus gallus, jejunum, duodenum, small intestine2021-04-28v31 / 232approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v41 / 236approvedNo
622amnoncommon caecum, age 42 days, research facility, liverpool, great britain, chicken, gallus gallus2020-05-08v41 / 244approvedNo
776amnon high in broiler chicken captive research facility age 5 weeks compared to wild feral age 15-20 weeks in caecum gallus gallus chicken hawaii 2021-04-25v31 / 252approvedNo
744amnon high in cloaca compared to ileum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 265approvedNo
808amnon high in digesta compared to mucosa in caecum germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 266approvedNo
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in gallus gallus chicken feces united kingdom )2018-09-14v41 / 271approvedNo
568amnoncommon gallus gallus, chicken, feces, broiler chicken, viet nam2019-12-08v31 / 272approvedNo
744amnon high in caecum compared to ileum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 286approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v41 / 290approvedNo
780amnoncommon caecum, jinzhou city prefecture, china, research facility, chicken, gallus gallus2021-04-28v31 / 294approvedNo
622amnon high in caecum compared to ileum in age 42 days research facility liverpool great britain chicken gallus gallus 2020-05-08v41 / 307approvedNo
568amnoncommon gallus gallus, chicken, feces, broiler chicken, thailand2019-12-08v31 / 320approvedNo
756amnoncommon caecum, lethbridge, age 35 days, canada, broiler chicken, research facility, gallus gallus, chicken2021-03-22v41 / 321approvedNo
776amnoncommon caecum, broiler chicken, research facility, captive, age 5 weeks, gallus gallus, chicken, hawaii2021-04-25v31 / 343approvedNo
808amnoncommon caecum, digesta, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 406approvedNo
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v41 / 412approvedNo
808amnoncommon caecum, mucosa, germany, age 35 weeks, research facility, hen, chicken, gallus gallus2021-06-20v11 / 446approvedNo
738amnon high in age 30 days compared to age 1 week in caecum united kingdom chicken gallus gallus 2021-01-30v31 / 474approvedNo
808amnon high in ileum compared to caecum in mucosa germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 587approvedNo
808amnon high in mucosa compared to digesta in caecum germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 701approvedNo
808amnon high in ileal mucosa mucosa compared to digesta in ileum germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 1360approvedNo
808amnon high in caecum compared to ileum in digesta germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 1776approvedNo
808amnon high in caecum compared to ileum in mucosa germany age 35 weeks research facility hen chicken gallus gallus 2021-06-20v11 / 2147approvedNo

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