Summary for ontology term: city

Number of annotations with term: 75

Annotations:

common ontology terms
term enrichment score
TermScore
city0.921826
colombia0.177778
late adult stage0.175824
LOWER IN city0.167866
adult0.152203
small village0.122449
homo sapiens0.116505
state of colorado0.108108
hong kong0.096386
house mice0.096386
ivy0.096386
hedera ibernica0.096386
saliva0.092105
south america0.091954
LOWER IN united states of america0.087912
new york city0.087912
china0.081013
belgium0.080808
LOWER IN small village0.075949
LOWER IN amerindian0.074074
LOWER IN hunter gatherer0.074074
LOWER IN venezuela0.074074
el salvador0.074074
shantytown0.074074
lima0.074074
vellore district0.074074
state of oklahoma0.071429
amerindian0.071429
venezuela0.071429
age 2 months0.071429
supragingival plaque0.071429
gay0.071429
homosexual0.071429
msm0.071429
heterosexual0.071429
msw0.071429
dense settlement biome0.071429
feces0.069492
hunter gatherer0.068966
wastewater treatment plant0.068966
air0.067227
india0.064516
leaf0.054422
dentition0.054054
united states of america0.051064
train0.050633
boston0.050633
subway0.050633
columbia0.050633
waste water0.050633
xinxiang city prefecture0.050633
depth 0.5m0.050633
jiulong river0.050633
fujian province0.050633
low income0.050633
state of arizona0.050633
age 200.050633
LOWER IN rural community0.050000
rural community0.048780
urban biome0.048193
infant0.047619
hospital0.045977
river0.041237
fresh water0.037383
skin0.033058
mouse0.029963
mus musculus0.027119
LOWER IN peru0.025974
LOWER IN tunapuco0.025974
tunapuco0.025974
LOWER IN state of oklahoma0.025974
low hdl0.025974
LOWER IN high hdl0.025974
bogota0.025974
LOWER IN municipality of santiago de cali0.025974
LOWER IN bucaramanga0.025974
LOWER IN barranquilla0.025974
barranquilla0.025974
bucaramanga0.025974
municipality of santiago de cali0.025974
LOWER IN bogota0.025974
LOWER IN medellin metropolitan area0.025974
high filber0.025974
LOWER IN low fiber0.025974
high hdl0.025974
LOWER IN low hdl0.025974
normal stool0.025974
LOWER IN hard stool0.025974
hard stool0.025974
LOWER IN normal stool0.025974
low fiber0.025974
LOWER IN populated place0.025974
populated place0.025974
LOWER IN lima0.025974
LOWER IN shantytown0.025974
LOWER IN el salado0.025974
sewer0.025974
LOWER IN sewer0.025974
LOWER IN wastewater treatment plant0.025974
LOWER IN influent0.025974
Fraction of dbbact annotations with this term covered by the query
TermScore
city0.937500
LOWER IN city0.833333
LOWER IN small village0.750000
small village0.750000
LOWER IN peru0.500000
LOWER IN tunapuco0.500000
tunapuco0.500000
LOWER IN state of oklahoma0.500000
LOWER IN amerindian0.500000
LOWER IN hunter gatherer0.500000
LOWER IN venezuela0.500000
train0.500000
boston0.500000
hong kong0.500000
subway0.500000
low hdl0.500000
LOWER IN high hdl0.500000
bogota0.500000
LOWER IN municipality of santiago de cali0.500000
LOWER IN bucaramanga0.500000
LOWER IN barranquilla0.500000
barranquilla0.500000
bucaramanga0.500000
municipality of santiago de cali0.500000
LOWER IN bogota0.500000
LOWER IN medellin metropolitan area0.500000
high filber0.500000
LOWER IN low fiber0.500000
high hdl0.500000
LOWER IN low hdl0.500000
columbia0.500000
normal stool0.500000
LOWER IN hard stool0.500000
hard stool0.500000
LOWER IN normal stool0.500000
low fiber0.500000
waste water0.500000
xinxiang city prefecture0.500000
depth 0.5m0.500000
jiulong river0.500000
fujian province0.500000
LOWER IN populated place0.500000
populated place0.500000
late adult stage0.500000
el salvador0.500000
LOWER IN lima0.500000
LOWER IN shantytown0.500000
shantytown0.500000
lima0.500000
LOWER IN el salado0.500000
low income0.500000
sewer0.500000
LOWER IN sewer0.500000
LOWER IN wastewater treatment plant0.500000
LOWER IN influent0.500000
LOWER IN sewage0.500000
sewage0.500000
influent0.500000
LOWER IN effluent0.500000
vellore district0.500000
dental caries0.500000
LOWER IN supragingival plaque0.500000
state of arizona0.500000
age 200.500000
LOWER IN dental caries0.500000
house mice0.500000
queens region0.500000
LOWER IN manhatten region0.500000
manhatten region0.500000
LOWER IN queens region0.500000
ivy0.500000
hedera ibernica0.500000
LOWER IN forest0.500000
LOWER IN moor0.500000
moor0.500000
LOWER IN dense settlement biome0.500000
LOWER IN rural community0.400000
state of oklahoma0.333333
peru0.333333
amerindian0.333333
venezuela0.333333
medellin metropolitan area0.333333
lean body mass0.333333
LOWER IN lean body mass0.333333
plant fiber cell0.333333
LOWER IN plant fiber cell0.333333
south america0.333333
age 2 months0.333333
probiotics0.333333
supragingival plaque0.333333
gay0.333333
homosexual0.333333
msm0.333333
LOWER IN heterosexual0.333333
LOWER IN msw0.333333
heterosexual0.333333
msw0.333333
LOWER IN gay0.333333
LOWER IN homosexual0.333333
LOWER IN msm0.333333
Fraction of annotations for the query sequences containing the term
TermScore
city0.906667
homo sapiens0.720000
feces0.520000
adult0.506667
united states of america0.240000
china0.213333
colombia0.160000
late adult stage0.106667
LOWER IN city0.093333
saliva0.093333
state of colorado0.080000
small village0.066667
LOWER IN united states of america0.053333
air0.053333
hong kong0.053333
south america0.053333
mus musculus0.053333
house mice0.053333
mouse0.053333
new york city0.053333
belgium0.053333
ivy0.053333
hedera ibernica0.053333
leaf0.053333
state of oklahoma0.040000
LOWER IN small village0.040000
hunter gatherer0.040000
amerindian0.040000
venezuela0.040000
LOWER IN amerindian0.040000
LOWER IN hunter gatherer0.040000
LOWER IN venezuela0.040000
el salvador0.040000
shantytown0.040000
lima0.040000
wastewater treatment plant0.040000
infant0.040000
india0.040000
vellore district0.040000
age 2 months0.040000
supragingival plaque0.040000
dentition0.040000
gay0.040000
homosexual0.040000
msm0.040000
heterosexual0.040000
msw0.040000
dense settlement biome0.040000
LOWER IN rural community0.026667
rural community0.026667
urban biome0.026667
train0.026667
boston0.026667
skin0.026667
subway0.026667
columbia0.026667
waste water0.026667
hospital0.026667
xinxiang city prefecture0.026667
river0.026667
water0.026667
fresh water0.026667
depth 0.5m0.026667
jiulong river0.026667
fujian province0.026667
low income0.026667
LOWER IN control0.026667
state of arizona0.026667
age 200.026667
LOWER IN peru0.013333
LOWER IN tunapuco0.013333
peru0.013333
tunapuco0.013333
LOWER IN state of oklahoma0.013333
low hdl0.013333
LOWER IN high hdl0.013333
medellin metropolitan area0.013333
bogota0.013333
LOWER IN municipality of santiago de cali0.013333
LOWER IN bucaramanga0.013333
LOWER IN barranquilla0.013333
barranquilla0.013333
bucaramanga0.013333
municipality of santiago de cali0.013333
LOWER IN bogota0.013333
LOWER IN medellin metropolitan area0.013333
lean body mass0.013333
low bmi0.013333
LOWER IN high bmi0.013333
high bmi0.013333
obesity0.013333
LOWER IN lean body mass0.013333
LOWER IN low bmi0.013333
plant fiber cell0.013333
high filber0.013333
LOWER IN low fiber0.013333
high hdl0.013333
LOWER IN low hdl0.013333
male0.013333
LOWER IN female0.013333
Exp. ID User ID Description Date Sequences
404amnonnegatively correlated with hdl levels ( high in low hdl compared to high hdl in colombia city adult feces homo sapiens )2019-01-101 / 4
332amnonhigher in infants treated with Lactobacillus rhamnosus GG probiotics compared to non-treated ( high in probiotics compared to control in homo sapiens infant india vellore district city age 2 months )2018-05-141 / 5
519amnon high in control compared to dental caries in saliva city late adult stage adult china homo sapiens 2019-06-251 / 5
332amnoncommon homo sapiens, infant, india, vellore district, city, age 2 months2018-05-141 / 8
332amnonhighfreq homo sapiens, infant, india, vellore district, city, age 2 months2018-05-141 / 9
519amnon high in dental caries compared to control in saliva city late adult stage adult china homo sapiens 2019-06-251 / 10
195amnonhigh freq. in boston subway surfaces (highfreq city, urban biome, train, boston)2017-09-071 / 11
475amnonhigh freq. in air in subway train in hong kong (highfreq air, hong kong, city, subway)2019-01-201 / 11
513amnonhighfreq china, waste water, hospital, city, xinxiang city prefecture2019-03-251 / 11
404amnon high in male compared to female in feces homo sapiens city adult colombia 2018-11-201 / 13
475amnonhigh freq. in air next to subway stations in hong kong (highfreq air, hong kong, city)2019-01-201 / 14
404amnon high in high bmi obesity compared to lean body mass low bmi in homo sapiens feces adult colombia city 2018-11-201 / 14
290amnon high in city compared to rural community small village in homo sapiens feces china adult 2018-02-011 / 14
393amnonhighfreq homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-061 / 14
276amnonhighfreq feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-221 / 15
519amnonhighfreq saliva, city, late adult stage, adult, china, homo sapiens2019-06-251 / 16
404amnonpositively correlated with hdl levels ( high in high hdl compared to low hdl in colombia city adult feces homo sapiens )2019-01-101 / 17
337amnonhigh freq. in feces of house mice from new york city (highfreq mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-181 / 17
519amnonhighfreq supragingival plaque, dentition, city, late adult stage, adult, china, homo sapiens2019-06-251 / 18
430amnonhighfreq homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-151 / 18
128amnonhighfreq belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-141 / 18
404amnonhighfreq homo sapiens, feces, colombia, city, adult2018-11-201 / 19
404amnon high in normal stool compared to hard stool in homo sapiens feces columbia city adult 2018-11-201 / 21
290amnon high in rural community small village compared to city in homo sapiens feces china adult 2018-02-011 / 21
393amnonhighfreq homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-061 / 21
404amnonpositively correlated with fiber intake ( high in plant fiber cell high filber compared to low fiber in homo sapiens feces adult colombia city )2018-11-201 / 22
53amnonhighfreq homo sapiens, feces, city, el salvador, small village2017-01-211 / 23
371amnonhigher in saliva of amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in homo sapiens saliva )2018-09-061 / 24
290amnonhighfreq homo sapiens, feces, china, adult, city2018-02-011 / 25
53amnonhighfreq lima, homo sapiens, feces, city, shantytown2017-01-211 / 25
404amnon high in hard stool compared to normal stool in homo sapiens feces columbia city adult 2018-11-201 / 27
404amnonnegatively correlated with fiber intake ( high in low fiber compared to plant fiber cell high fiber in homo sapiens feces adult colombia city )2018-11-201 / 32
519amnon high in supragingival plaque dentition compared to saliva in city late adult stage adult china homo sapiens 2019-06-251 / 56
371amnonlower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )2018-09-061 / 60
404amnon high in barranquilla bucaramanga municipality of santiago de cali compared to bogota medellin metropolitan area in homo sapiens feces adult colombia city 2018-11-201 / 71
404amnoncommon homo sapiens, feces, colombia, city, adult2018-11-201 / 79
404amnon high in lean body mass low bmi compared to high bmi in homo sapiens feces adult colombia city 2018-11-201 / 84
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-061 / 84
513amnoncommon china, waste water, hospital, city, xinxiang city prefecture2019-03-251 / 86
430amnoncommon homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-151 / 87
404amnon high in female compared to male in homo sapiens feces adult colombia city 2018-11-201 / 88
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-061 / 94
519amnoncommon supragingival plaque, dentition, city, late adult stage, adult, china, homo sapiens2019-06-251 / 104
393amnon high in heterosexual msw compared to gay homosexual msm in homo sapiens feces united states of america adult state of colorado city 2018-11-061 / 107
276amnoncommon feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-221 / 110
53amnoncommon homo sapiens, feces, lima, city, shantytown2017-01-211 / 110
195amnoncommon in boston subway surfaces (common city, urban biome, train, boston)2017-09-071 / 116
393amnon high in gay homosexual msm compared to heterosexual msw in homo sapiens feces united states of america adult state of colorado city 2018-11-061 / 121
519amnoncommon saliva, city, late adult stage, adult, china, homo sapiens2019-06-251 / 134
475amnoncommon in air next to subway stations in hong kong (common air, hong kong, city)2019-01-201 / 147
53amnonhigher in sewer and wastewater influent comapred to feces in low income south america ( high in sewer wastewater treatment plant compared to feces in south america city low income )2017-01-211 / 148
53amnoncommon homo sapiens, feces, city, el salvador, small village2017-01-211 / 155
519amnon high in saliva compared to supragingival plaque dentition in city late adult stage adult china homo sapiens 2019-06-251 / 159
475amnoncommon in air in subway train in hong kong (common air, hong kong, city, subway)2019-01-201 / 161
290amnoncommon homo sapiens, feces, china, adult, city2018-02-011 / 162
337amnonhigher in manhattan compared to queens in feces of house mice from new york city ( high in manhatten region compared to queens region in mus musculus house mice mouse new york city united states of america city )2018-05-181 / 162
337amnoncommon in feces of house mice from new york city (common mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-181 / 165
276amnon high in united states of america city state of oklahoma compared to peru small village tunapuco rural community in feces homo sapiens adult 2018-01-221 / 168
53amnonlower in sewer and wastewater treatment plant influent compared to feces in south america ( high in feces homo sapiens compared to sewer wastewater treatment plant in south america city low income )2017-01-211 / 188
371amnonlower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )2018-09-061 / 195
404amnon high in medellin metropolitan area bogota compared to municipality of santiago de cali bucaramanga barranquilla in homo sapiens feces adult colombia city 2018-11-201 / 237
53amnon high in shantytown lima compared to el salado small village in homo sapiens feces city 2017-01-211 / 237
128amnonhigher in ivy leaves from city compared to moor and forest ( high in city dense settlement biome compared to forest moor in belgium ivy hedera ibernica leaf )2017-04-141 / 287
53amnon high in el salvador small village compared to lima shantytown in homo sapiens feces city 2017-01-211 / 296
254amnonhigher in river when close to populated region compared to downstream ( high in city populated place upstream compared to downstream in river china water fresh water depth 0.5m jiulong river fujian province )2017-11-231 / 356
337amnonlower in manhattan compared to queens in feces of house mice from new york city ( high in queens region compared to manhatten region in united states of america city mus musculus new york city mouse house mice )2018-05-181 / 362
371amnonlower in amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in feces homo sapiens )2018-09-061 / 417
53amnonlower in wastewater plant effluent compared to influent and sewer in south america ( high in sewage influent compared to effluent in south america wastewater treatment plant city )2017-01-211 / 440
371amnonhigher in amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in feces homo sapiens )2018-09-061 / 443
128amnoncommon belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-141 / 461
254amnonlower in river when close to populated region compared to downstream ( high in downstream compared to upstream city populated place in river china water fresh water depth 0.5m jiulong river fujian province )2017-11-231 / 468
276amnon high in peru small village tunapuco rural community compared to united states of america city state of oklahoma in feces homo sapiens adult 2018-01-221 / 469
128amnonhigher in ivy leaves from moor and forest compared to city ( high in moor forest compared to city dense settlement biome in belgium ivy hedera ibernica leaf )2017-04-141 / 525
53amnonhigher in wastewater plant effluent compared to influent and sewer in south america ( high in effluent compared to influent sewage in south america city wastewater treatment plant )2017-01-211 / 657
371amnonhigher in skin of amerindians compared to western visitors ( high in venezuela hunter gatherer amerindian compared to city united states of america in homo sapiens skin )2018-09-061 / 854

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