Summary for ontology term: city

Number of annotations with term: 91

Annotations:

common ontology terms
term enrichment score
TermScore
city0.927984
hokkaido0.188976
LOWER IN city0.159468
colombia0.158940
late adult stage0.149533
starfish0.149533
coelomic fluid0.139130
adult0.128244
japan0.107623
homo sapiens0.103258
small village0.102389
state of colorado0.090226
cameroon0.080808
hong kong0.080808
asterias amurensis0.080808
patiria pectinifera0.080808
house mice0.080808
ivy0.080808
hedera ibernica0.080808
south america0.077670
new york city0.074766
saliva0.074074
LOWER IN united states of america0.073394
wild0.070485
belgium0.067227
feces0.066409
LOWER IN small village0.063158
china0.062622
LOWER IN rural community0.061856
yaounde0.061856
shantytown0.061856
lima0.061856
LOWER IN amerindian0.061856
LOWER IN hunter gatherer0.061856
LOWER IN venezuela0.061856
vellore district0.061856
el salvador0.061856
state of oklahoma0.060000
rural community0.060000
amerindian0.060000
venezuela0.060000
age 2 months0.060000
dense settlement biome0.060000
air0.059259
hunter gatherer0.058252
wastewater treatment plant0.058252
supragingival plaque0.058252
gay0.058252
msw0.058252
heterosexual0.058252
homosexual0.056604
msm0.056604
india0.053571
leaf0.046784
united states of america0.044588
dentition0.043165
train0.042105
boston0.042105
subway0.042105
columbia0.042105
waste water0.042105
xinxiang city prefecture0.042105
jiulong river0.042105
fujian province0.042105
LOWER IN starfish0.042105
LOWER IN coelomic fluid0.042105
LOWER IN patiria pectinifera0.042105
LOWER IN asterias amurensis0.042105
low income0.042105
age 200.042105
depth 0.5m0.041237
infant0.040541
urban biome0.040404
state of arizona0.040404
hospital0.038835
sea water0.038647
LOWER IN sea water0.038095
LOWER IN wild0.036036
river0.034783
fresh water0.031008
skin0.027586
mouse0.026756
mus musculus0.024465
LOWER IN peru0.021505
LOWER IN tunapuco0.021505
tunapuco0.021505
LOWER IN state of oklahoma0.021505
ngoantet0.021505
LOWER IN yaounde0.021505
LOWER IN ngoantet0.021505
LOWER IN el salado0.021505
low hdl0.021505
LOWER IN high hdl0.021505
bogota0.021505
LOWER IN municipality of santiago de cali0.021505
LOWER IN bucaramanga0.021505
LOWER IN barranquilla0.021505
barranquilla0.021505
bucaramanga0.021505
municipality of santiago de cali0.021505
Fraction of dbbact annotations with this term covered by the query
TermScore
city0.944444
LOWER IN city0.857143
LOWER IN small village0.750000
small village0.750000
LOWER IN peru0.500000
LOWER IN tunapuco0.500000
LOWER IN rural community0.500000
tunapuco0.500000
LOWER IN state of oklahoma0.500000
cameroon0.500000
ngoantet0.500000
LOWER IN yaounde0.500000
yaounde0.500000
LOWER IN ngoantet0.500000
shantytown0.500000
lima0.500000
LOWER IN el salado0.500000
LOWER IN amerindian0.500000
LOWER IN hunter gatherer0.500000
LOWER IN venezuela0.500000
train0.500000
boston0.500000
hong kong0.500000
subway0.500000
low hdl0.500000
LOWER IN high hdl0.500000
bogota0.500000
LOWER IN municipality of santiago de cali0.500000
LOWER IN bucaramanga0.500000
LOWER IN barranquilla0.500000
barranquilla0.500000
bucaramanga0.500000
municipality of santiago de cali0.500000
LOWER IN bogota0.500000
LOWER IN medellin metropolitan area0.500000
high filber0.500000
LOWER IN low fiber0.500000
high hdl0.500000
LOWER IN low hdl0.500000
columbia0.500000
normal stool0.500000
LOWER IN hard stool0.500000
hard stool0.500000
LOWER IN normal stool0.500000
low fiber0.500000
waste water0.500000
xinxiang city prefecture0.500000
jiulong river0.500000
fujian province0.500000
LOWER IN populated place0.500000
populated place0.500000
late adult stage0.500000
starfish0.500000
asterias amurensis0.500000
patiria pectinifera0.500000
LOWER IN starfish0.500000
LOWER IN coelomic fluid0.500000
LOWER IN patiria pectinifera0.500000
LOWER IN asterias amurensis0.500000
vellore district0.500000
el salvador0.500000
LOWER IN lima0.500000
LOWER IN shantytown0.500000
low income0.500000
sewer0.500000
LOWER IN sewer0.500000
LOWER IN wastewater treatment plant0.500000
LOWER IN influent0.500000
LOWER IN sewage0.500000
sewage0.500000
influent0.500000
LOWER IN effluent0.500000
dental caries0.500000
age 200.500000
house mice0.500000
queens region0.500000
LOWER IN manhatten region0.500000
manhatten region0.500000
LOWER IN queens region0.500000
LOWER IN dental caries0.500000
ivy0.500000
hedera ibernica0.500000
LOWER IN moor0.500000
LOWER IN forest ecosystem0.500000
moor0.500000
LOWER IN dense settlement biome0.500000
state of oklahoma0.333333
peru0.333333
rural community0.333333
amerindian0.333333
venezuela0.333333
medellin metropolitan area0.333333
lean body mass0.333333
LOWER IN lean body mass0.333333
plant fiber cell0.333333
LOWER IN male0.333333
LOWER IN plant fiber cell0.333333
depth 0.5m0.333333
hokkaido0.333333
coelomic fluid0.333333
Fraction of annotations for the query sequences containing the term
TermScore
city0.912088
homo sapiens0.637363
feces0.472527
adult0.461538
united states of america0.197802
china0.175824
colombia0.131868
hokkaido0.131868
japan0.131868
LOWER IN city0.087912
late adult stage0.087912
starfish0.087912
coelomic fluid0.087912
wild0.087912
saliva0.076923
state of colorado0.065934
small village0.054945
LOWER IN united states of america0.043956
cameroon0.043956
air0.043956
hong kong0.043956
sea water0.043956
asterias amurensis0.043956
patiria pectinifera0.043956
south america0.043956
mus musculus0.043956
house mice0.043956
mouse0.043956
new york city0.043956
belgium0.043956
ivy0.043956
hedera ibernica0.043956
leaf0.043956
state of oklahoma0.032967
LOWER IN small village0.032967
LOWER IN rural community0.032967
rural community0.032967
yaounde0.032967
shantytown0.032967
lima0.032967
hunter gatherer0.032967
amerindian0.032967
venezuela0.032967
LOWER IN amerindian0.032967
LOWER IN hunter gatherer0.032967
LOWER IN venezuela0.032967
infant0.032967
vellore district0.032967
age 2 months0.032967
india0.032967
el salvador0.032967
wastewater treatment plant0.032967
dentition0.032967
supragingival plaque0.032967
gay0.032967
homosexual0.032967
msm0.032967
msw0.032967
heterosexual0.032967
dense settlement biome0.032967
urban biome0.021978
train0.021978
boston0.021978
skin0.021978
subway0.021978
columbia0.021978
waste water0.021978
hospital0.021978
xinxiang city prefecture0.021978
river0.021978
water0.021978
fresh water0.021978
depth 0.5m0.021978
jiulong river0.021978
fujian province0.021978
LOWER IN sea water0.021978
LOWER IN starfish0.021978
LOWER IN wild0.021978
LOWER IN coelomic fluid0.021978
LOWER IN patiria pectinifera0.021978
LOWER IN asterias amurensis0.021978
LOWER IN control0.021978
low income0.021978
state of arizona0.021978
age 200.021978
LOWER IN peru0.010989
LOWER IN tunapuco0.010989
peru0.010989
tunapuco0.010989
LOWER IN state of oklahoma0.010989
ngoantet0.010989
LOWER IN yaounde0.010989
LOWER IN ngoantet0.010989
LOWER IN el salado0.010989
low hdl0.010989
LOWER IN high hdl0.010989
medellin metropolitan area0.010989
bogota0.010989
LOWER IN municipality of santiago de cali0.010989
LOWER IN bucaramanga0.010989
Exp. ID User ID Description Date Region Flag Sequences
404amnonnegatively correlated with hdl levels ( high in low hdl compared to high hdl in colombia city adult feces homo sapiens )2019-01-10v4No1 / 4
550amnondominant city, hokkaido, starfish, coelomic fluid, wild, patiria pectinifera, japan2019-08-18v4No1 / 5
550amnon high in starfish wild coelomic fluid asterias amurensis compared to sea water in city hokkaido japan 2019-08-18v4No1 / 5
332amnonhigher in infants treated with Lactobacillus rhamnosus GG probiotics compared to non-treated ( high in probiotics compared to control in homo sapiens infant vellore district city age 2 months india )2018-05-14v4No1 / 5
519amnon high in control compared to dental caries in homo sapiens adult late adult stage city saliva china 2019-06-25v3No1 / 5
550amnondominant city, hokkaido, starfish, asterias amurensis, coelomic fluid, wild, japan2019-08-18v4No1 / 6
550amnon high in asterias amurensis compared to patiria pectinifera in city hokkaido starfish coelomic fluid wild japan 2019-08-18v4No1 / 7
332amnoncommon homo sapiens, infant, vellore district, city, age 2 months, india2018-05-14v4No1 / 8
332amnondominant homo sapiens, infant, vellore district, city, age 2 months, india2018-05-14v4No1 / 9
519amnon high in dental caries compared to control in homo sapiens adult late adult stage city saliva china 2019-06-25v3No1 / 10
195amnonhigh freq. in boston subway surfaces (dominant city, urban biome, train, boston)2017-09-07v4No1 / 11
475amnonhigh freq. in air in subway train in hong kong (dominant air, hong kong, city, subway)2019-01-20v4No1 / 11
513amnondominant waste water, hospital, city, xinxiang city prefecture, china2019-03-25v4No1 / 11
594amnondominant adult, cameroon, feces, homo sapiens, city, yaounde2020-03-12v4No1 / 13
404amnon high in male compared to female in feces homo sapiens city adult colombia 2018-11-20v4No1 / 13
475amnonhigh freq. in air next to subway stations in hong kong (dominant air, hong kong, city)2019-01-20v4No1 / 14
404amnon high in high bmi obesity compared to lean body mass low bmi in homo sapiens feces adult colombia city 2018-11-20v4No1 / 14
290amnon high in city compared to rural community small village in homo sapiens feces adult china 2018-02-01v4No1 / 14
393amnondominant homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-06v4No1 / 14
276amnondominant feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-22v4No1 / 15
550amnoncommon city, hokkaido, starfish, asterias amurensis, coelomic fluid, wild, japan2019-08-18v4No1 / 15
550amnon high in starfish coelomic fluid wild patiria pectinifera compared to sea water in city hokkaido japan 2019-08-18v4No1 / 15
519amnondominant homo sapiens, adult, late adult stage, city, saliva, china2019-06-25v3No1 / 16
404amnonpositively correlated with hdl levels ( high in high hdl compared to low hdl in colombia city adult feces homo sapiens )2019-01-10v4No1 / 17
337amnonhigh freq. in feces of house mice from new york city (dominant mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-18v4No1 / 17
430amnondominant homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-15v4No1 / 18
519amnondominant homo sapiens, adult, late adult stage, city, dentition, supragingival plaque, china2019-06-25v3No1 / 18
128amnondominant belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-14v4No1 / 18
404amnondominant homo sapiens, feces, colombia, city, adult2018-11-20v4No1 / 19
550amnondominant sea water, hokkaido, city, japan2019-08-18v4No1 / 20
404amnon high in normal stool compared to hard stool in homo sapiens feces columbia city adult 2018-11-20v4No1 / 21
290amnon high in rural community small village compared to city in homo sapiens feces adult china 2018-02-01v4No1 / 21
393amnondominant homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-06v4No1 / 21
404amnonpositively correlated with fiber intake ( high in plant fiber cell high filber compared to low fiber in homo sapiens feces adult colombia city )2018-11-20v4No1 / 22
53amnondominant homo sapiens, feces, city, el salvador, small village2017-01-21v4No1 / 23
371amnonhigher in saliva of amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in homo sapiens saliva )2018-09-06v4No1 / 24
290amnondominant homo sapiens, feces, adult, city, china2018-02-01v4No1 / 25
53amnondominant lima, homo sapiens, feces, city, shantytown2017-01-21v4No1 / 25
404amnon high in hard stool compared to normal stool in homo sapiens feces columbia city adult 2018-11-20v4No1 / 27
404amnonnegatively correlated with fiber intake ( high in low fiber compared to plant fiber cell high fiber in homo sapiens feces adult colombia city )2018-11-20v4No1 / 32
519amnon high in dentition supragingival plaque compared to saliva in homo sapiens adult late adult stage city china 2019-06-25v3No1 / 56
371amnonlower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )2018-09-06v4No1 / 60
594amnon high in yaounde city compared to rural community ngoantet in adult cameroon feces homo sapiens 2020-03-12v4No1 / 70
404amnon high in barranquilla bucaramanga municipality of santiago de cali compared to bogota medellin metropolitan area in homo sapiens feces adult colombia city 2018-11-20v4No1 / 71
404amnoncommon homo sapiens, feces, colombia, city, adult2018-11-20v4No1 / 79
404amnon high in lean body mass low bmi compared to high bmi in homo sapiens feces adult colombia city 2018-11-20v4No1 / 84
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-06v4No1 / 84
550amnoncommon city, hokkaido, starfish, coelomic fluid, wild, patiria pectinifera, japan2019-08-18v4No1 / 85
513amnoncommon waste water, hospital, city, xinxiang city prefecture, china2019-03-25v4No1 / 86
430amnoncommon homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-15v4No1 / 87
404amnon high in female compared to male in homo sapiens feces adult colombia city 2018-11-20v4No1 / 88
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-06v4No1 / 94
519amnoncommon homo sapiens, adult, late adult stage, city, dentition, supragingival plaque, china2019-06-25v3No1 / 104
393amnon high in heterosexual msw compared to gay homosexual msm in homo sapiens feces united states of america adult state of colorado city 2018-11-06v4No1 / 107
276amnoncommon feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-22v4No1 / 110
53amnoncommon homo sapiens, feces, lima, city, shantytown2017-01-21v4No1 / 110
195amnoncommon in boston subway surfaces (common city, urban biome, train, boston)2017-09-07v4No1 / 116
393amnon high in gay homosexual msm compared to heterosexual msw in homo sapiens feces united states of america adult state of colorado city 2018-11-06v4No1 / 121
519amnoncommon homo sapiens, adult, late adult stage, city, saliva, china2019-06-25v3No1 / 134
475amnoncommon in air next to subway stations in hong kong (common air, hong kong, city)2019-01-20v4No1 / 147
53amnonhigher in sewer and wastewater influent comapred to feces in low income south america ( high in sewer wastewater treatment plant compared to feces in south america city low income )2017-01-21v4No1 / 148
594amnoncommon adult, cameroon, feces, homo sapiens, city, yaounde2020-03-12v4No1 / 154
53amnoncommon homo sapiens, feces, city, el salvador, small village2017-01-21v4No1 / 155
519amnon high in saliva compared to dentition supragingival plaque in homo sapiens adult late adult stage city china 2019-06-25v3No1 / 159
475amnoncommon in air in subway train in hong kong (common air, hong kong, city, subway)2019-01-20v4No1 / 161
290amnoncommon homo sapiens, feces, adult, city, china2018-02-01v4No1 / 162
337amnonhigher in manhattan compared to queens in feces of house mice from new york city ( high in manhatten region compared to queens region in mus musculus house mice mouse new york city united states of america city )2018-05-18v4No1 / 162
337amnoncommon in feces of house mice from new york city (common mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-18v4No1 / 165
276amnon high in united states of america city state of oklahoma compared to peru small village tunapuco rural community in feces homo sapiens adult 2018-01-22v4No1 / 168
594amnon high in ngoantet rural community compared to city yaounde in homo sapiens feces cameroon adult 2020-03-12v4No1 / 172
550amnon high in sea water compared to starfish wild coelomic fluid patiria pectinifera in city hokkaido japan 2019-08-18v4No1 / 185
53amnonlower in sewer and wastewater treatment plant influent compared to feces in south america ( high in feces homo sapiens compared to sewer wastewater treatment plant in south america city low income )2017-01-21v4No1 / 188
371amnonlower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )2018-09-06v4No1 / 195
53amnon high in shantytown lima compared to el salado small village in homo sapiens feces city 2017-01-21v4No1 / 237
404amnon high in medellin metropolitan area bogota compared to municipality of santiago de cali bucaramanga barranquilla in homo sapiens feces adult colombia city 2018-11-20v4No1 / 237
550amnon high in patiria pectinifera compared to asterias amurensis in city hokkaido starfish coelomic fluid wild japan 2019-08-18v4No1 / 278
128amnonhigher in ivy leaves from city compared to moor and forest ( high in city dense settlement biome compared to moor forest ecosystem in belgium ivy hedera ibernica leaf )2017-04-14v4No1 / 287
550amnoncommon city, hokkaido, sea water, japan2019-08-18v4No1 / 291
53amnon high in el salvador small village compared to lima shantytown in homo sapiens feces city 2017-01-21v4No1 / 296
254amnonhigher in river when close to populated region compared to downstream ( high in city populated place upstream compared to downstream in river water fresh water depth 0.5m jiulong river fujian province china )2017-11-23v4No1 / 356
337amnonlower in manhattan compared to queens in feces of house mice from new york city ( high in queens region compared to manhatten region in united states of america city mus musculus new york city mouse house mice )2018-05-18v4No1 / 362
550amnon high in sea water compared to starfish asterias amurensis coelomic fluid wild in city hokkaido japan 2019-08-18v4No1 / 389
371amnonlower in amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in feces homo sapiens )2018-09-06v4No1 / 417
53amnonlower in wastewater plant effluent compared to influent and sewer in south america ( high in sewage influent compared to effluent in south america wastewater treatment plant city )2017-01-21v4No1 / 440
371amnonhigher in amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in feces homo sapiens )2018-09-06v4No1 / 443
128amnoncommon belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-14v4No1 / 461
254amnonlower in river when close to populated region compared to downstream ( high in downstream compared to upstream city populated place in river water fresh water depth 0.5m jiulong river fujian province china )2017-11-23v4No1 / 468
276amnon high in peru small village tunapuco rural community compared to united states of america city state of oklahoma in feces homo sapiens adult 2018-01-22v4No1 / 469
128amnonhigher in ivy leaves from moor and forest compared to city ( high in moor forest ecosystem compared to city dense settlement biome in belgium ivy hedera ibernica leaf )2017-04-14v4No1 / 525
53amnonhigher in wastewater plant effluent compared to influent and sewer in south america ( high in effluent compared to influent sewage in south america city wastewater treatment plant )2017-01-21v4No1 / 657
371amnonhigher in skin of amerindians compared to western visitors ( high in venezuela hunter gatherer amerindian compared to city united states of america in homo sapiens skin )2018-09-06v4No1 / 854

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