Summary for ontology term: city

Number of annotations with term: 93

Annotations:

common ontology terms
term enrichment score
TermScore
city0.930374
hokkaido0.186047
colombia0.156863
LOWER IN city0.156352
late adult stage0.146789
starfish0.146789
coelomic fluid0.136752
japan0.106667
small village0.100334
air0.093023
adult0.088889
state of colorado0.085106
homo sapiens0.079670
hong kong0.079208
asterias amurensis0.079208
patiria pectinifera0.079208
house mice0.079208
ivy0.079208
hedera ibernica0.079208
cameroon0.076190
south america0.076190
LOWER IN united states of america0.070796
new york city0.068376
belgium0.064000
saliva0.063927
wild0.063241
LOWER IN small village0.061856
LOWER IN rural community0.060606
yaounde0.060606
shantytown0.060606
lima0.060606
LOWER IN amerindian0.060606
LOWER IN hunter gatherer0.060606
LOWER IN venezuela0.060606
vellore district0.060606
el salvador0.060606
state of oklahoma0.058824
amerindian0.058824
venezuela0.058824
dense settlement biome0.058824
rural community0.058252
hunter gatherer0.057143
gay0.057143
wastewater treatment plant0.055556
msw0.055556
heterosexual0.055556
feces0.054926
age 2 months0.054054
homosexual0.054054
msm0.054054
china0.053245
india0.052632
supragingival plaque0.051282
leaf0.046243
train0.041237
boston0.041237
subway0.041237
columbia0.041237
waste water0.041237
xinxiang city prefecture0.041237
jiulong river0.041237
fujian province0.041237
LOWER IN starfish0.041237
LOWER IN coelomic fluid0.041237
LOWER IN patiria pectinifera0.041237
LOWER IN asterias amurensis0.041237
low income0.041237
age 200.041237
madrid0.040404
depth 0.5m0.040404
united states of america0.039709
urban biome0.039604
state of arizona0.039604
infant0.038462
dentition0.038462
hospital0.035398
LOWER IN sea water0.035398
sea water0.034934
LOWER IN wild0.034783
river0.034188
kingdom of spain0.030534
fresh water0.030075
skin0.026144
mouse0.025559
mus musculus0.023460
LOWER IN peru0.021053
LOWER IN tunapuco0.021053
tunapuco0.021053
LOWER IN state of oklahoma0.021053
ngoantet0.021053
LOWER IN yaounde0.021053
LOWER IN ngoantet0.021053
LOWER IN el salado0.021053
low hdl0.021053
LOWER IN high hdl0.021053
bogota0.021053
LOWER IN municipality of santiago de cali0.021053
LOWER IN bucaramanga0.021053
LOWER IN barranquilla0.021053
barranquilla0.021053
Fraction of dbbact annotations with this term covered by the query
TermScore
city0.947368
LOWER IN city0.857143
LOWER IN small village0.750000
small village0.750000
LOWER IN peru0.500000
LOWER IN tunapuco0.500000
LOWER IN rural community0.500000
tunapuco0.500000
LOWER IN state of oklahoma0.500000
ngoantet0.500000
LOWER IN yaounde0.500000
yaounde0.500000
LOWER IN ngoantet0.500000
shantytown0.500000
lima0.500000
LOWER IN el salado0.500000
LOWER IN amerindian0.500000
LOWER IN hunter gatherer0.500000
LOWER IN venezuela0.500000
train0.500000
boston0.500000
hong kong0.500000
subway0.500000
low hdl0.500000
LOWER IN high hdl0.500000
bogota0.500000
LOWER IN municipality of santiago de cali0.500000
LOWER IN bucaramanga0.500000
LOWER IN barranquilla0.500000
barranquilla0.500000
bucaramanga0.500000
municipality of santiago de cali0.500000
LOWER IN bogota0.500000
LOWER IN medellin metropolitan area0.500000
high filber0.500000
LOWER IN low fiber0.500000
high hdl0.500000
LOWER IN low hdl0.500000
columbia0.500000
normal stool0.500000
LOWER IN hard stool0.500000
hard stool0.500000
LOWER IN normal stool0.500000
low fiber0.500000
waste water0.500000
xinxiang city prefecture0.500000
jiulong river0.500000
fujian province0.500000
LOWER IN populated place0.500000
populated place0.500000
late adult stage0.500000
starfish0.500000
asterias amurensis0.500000
patiria pectinifera0.500000
LOWER IN starfish0.500000
LOWER IN coelomic fluid0.500000
LOWER IN patiria pectinifera0.500000
LOWER IN asterias amurensis0.500000
vellore district0.500000
el salvador0.500000
LOWER IN lima0.500000
LOWER IN shantytown0.500000
low income0.500000
sewer0.500000
LOWER IN sewer0.500000
LOWER IN influent0.500000
LOWER IN sewage0.500000
sewage0.500000
LOWER IN effluent0.500000
dental caries0.500000
age 200.500000
house mice0.500000
queens region0.500000
LOWER IN manhatten region0.500000
manhatten region0.500000
LOWER IN queens region0.500000
LOWER IN dental caries0.500000
ivy0.500000
hedera ibernica0.500000
LOWER IN moor0.500000
LOWER IN forest ecosystem0.500000
moor0.500000
LOWER IN dense settlement biome0.500000
state of oklahoma0.333333
peru0.333333
cameroon0.333333
amerindian0.333333
venezuela0.333333
madrid0.333333
medellin metropolitan area0.333333
lean body mass0.333333
LOWER IN lean body mass0.333333
plant fiber cell0.333333
LOWER IN male0.333333
LOWER IN plant fiber cell0.333333
depth 0.5m0.333333
hokkaido0.333333
coelomic fluid0.333333
probiotics0.333333
south america0.333333
Fraction of annotations for the query sequences containing the term
TermScore
city0.913978
homo sapiens0.623656
feces0.462366
adult0.451613
united states of america0.193548
china0.172043
colombia0.129032
hokkaido0.129032
japan0.129032
LOWER IN city0.086022
late adult stage0.086022
starfish0.086022
coelomic fluid0.086022
wild0.086022
saliva0.075269
air0.064516
state of colorado0.064516
small village0.053763
LOWER IN united states of america0.043011
cameroon0.043011
hong kong0.043011
sea water0.043011
asterias amurensis0.043011
patiria pectinifera0.043011
south america0.043011
mus musculus0.043011
house mice0.043011
mouse0.043011
new york city0.043011
belgium0.043011
ivy0.043011
hedera ibernica0.043011
leaf0.043011
state of oklahoma0.032258
LOWER IN small village0.032258
LOWER IN rural community0.032258
rural community0.032258
yaounde0.032258
shantytown0.032258
lima0.032258
hunter gatherer0.032258
amerindian0.032258
venezuela0.032258
LOWER IN amerindian0.032258
LOWER IN hunter gatherer0.032258
LOWER IN venezuela0.032258
infant0.032258
vellore district0.032258
age 2 months0.032258
india0.032258
el salvador0.032258
wastewater treatment plant0.032258
dentition0.032258
supragingival plaque0.032258
gay0.032258
homosexual0.032258
msm0.032258
msw0.032258
heterosexual0.032258
dense settlement biome0.032258
urban biome0.021505
train0.021505
boston0.021505
skin0.021505
madrid0.021505
kingdom of spain0.021505
subway0.021505
columbia0.021505
waste water0.021505
hospital0.021505
xinxiang city prefecture0.021505
river0.021505
water0.021505
fresh water0.021505
depth 0.5m0.021505
jiulong river0.021505
fujian province0.021505
LOWER IN sea water0.021505
LOWER IN starfish0.021505
LOWER IN wild0.021505
LOWER IN coelomic fluid0.021505
LOWER IN patiria pectinifera0.021505
LOWER IN asterias amurensis0.021505
LOWER IN control0.021505
low income0.021505
state of arizona0.021505
age 200.021505
LOWER IN peru0.010753
LOWER IN tunapuco0.010753
peru0.010753
tunapuco0.010753
LOWER IN state of oklahoma0.010753
ngoantet0.010753
LOWER IN yaounde0.010753
LOWER IN ngoantet0.010753
LOWER IN el salado0.010753
low hdl0.010753
LOWER IN high hdl0.010753
medellin metropolitan area0.010753
bogota0.010753
Exp. ID User ID Description Date Region Flag Sequences
404amnonnegatively correlated with hdl levels ( high in low hdl compared to high hdl in colombia city adult feces homo sapiens )2019-01-10v4No1 / -4
682amnondominant city, madrid, kingdom of spain, air2028-03-04v3No1 / -3
550amnondominant city, hokkaido, starfish, coelomic fluid, wild, patiria pectinifera, japan2019-08-18v4No1 / -3
550amnon high in starfish wild coelomic fluid asterias amurensis compared to sea water in city hokkaido japan 2019-08-18v4No1 / -3
332amnonhigher in infants treated with Lactobacillus rhamnosus GG probiotics compared to non-treated ( high in probiotics compared to control in homo sapiens infant vellore district city age 2 months india )2018-05-14v4No1 / -3
519amnon high in control compared to dental caries in homo sapiens adult late adult stage city saliva china 2019-06-25v3No1 / -3
550amnondominant city, hokkaido, starfish, asterias amurensis, coelomic fluid, wild, japan2019-08-18v4No1 / -2
550amnon high in asterias amurensis compared to patiria pectinifera in city hokkaido starfish coelomic fluid wild japan 2019-08-18v4No1 / -1
332amnoncommon homo sapiens, infant, vellore district, city, age 2 months, india2018-05-14v4No1 / 0
332amnondominant homo sapiens, infant, vellore district, city, age 2 months, india2018-05-14v4No1 / 1
519amnon high in dental caries compared to control in homo sapiens adult late adult stage city saliva china 2019-06-25v3No1 / 2
195amnonhigh freq. in boston subway surfaces (dominant city, urban biome, train, boston)2017-09-07v4No1 / 3
475amnonhigh freq. in air in subway train in hong kong (dominant air, hong kong, city, subway)2019-01-20v4No1 / 3
513amnondominant waste water, hospital, city, xinxiang city prefecture, china2019-03-25v4No1 / 3
594amnondominant adult, cameroon, feces, homo sapiens, city, yaounde2020-03-12v4No1 / 5
404amnon high in male compared to female in feces homo sapiens city adult colombia 2018-11-20v4No1 / 5
475amnonhigh freq. in air next to subway stations in hong kong (dominant air, hong kong, city)2019-01-20v4No1 / 6
404amnon high in high bmi obesity compared to lean body mass low bmi in homo sapiens feces adult colombia city 2018-11-20v4No1 / 6
290amnon high in city compared to rural community small village in homo sapiens feces adult china 2018-02-01v4No1 / 6
393amnondominant homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-06v4No1 / 6
276amnondominant feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-22v4No1 / 7
550amnoncommon city, hokkaido, starfish, asterias amurensis, coelomic fluid, wild, japan2019-08-18v4No1 / 7
550amnon high in starfish coelomic fluid wild patiria pectinifera compared to sea water in city hokkaido japan 2019-08-18v4No1 / 7
519amnondominant homo sapiens, adult, late adult stage, city, saliva, china2019-06-25v3No1 / 8
404amnonpositively correlated with hdl levels ( high in high hdl compared to low hdl in colombia city adult feces homo sapiens )2019-01-10v4No1 / 9
337amnonhigh freq. in feces of house mice from new york city (dominant mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-18v4No1 / 9
430amnondominant homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-15v4No1 / 10
519amnondominant homo sapiens, adult, late adult stage, city, dentition, supragingival plaque, china2019-06-25v3No1 / 10
128amnondominant belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-14v4No1 / 10
404amnondominant homo sapiens, feces, colombia, city, adult2018-11-20v4No1 / 11
550amnondominant sea water, hokkaido, city, japan2019-08-18v4No1 / 12
404amnon high in normal stool compared to hard stool in homo sapiens feces columbia city adult 2018-11-20v4No1 / 13
290amnon high in rural community small village compared to city in homo sapiens feces adult china 2018-02-01v4No1 / 13
393amnondominant homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-06v4No1 / 13
404amnonpositively correlated with fiber intake ( high in plant fiber cell high filber compared to low fiber in homo sapiens feces adult colombia city )2018-11-20v4No1 / 14
53amnondominant homo sapiens, feces, city, el salvador, small village2017-01-21v4No1 / 15
371amnonhigher in saliva of amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in homo sapiens saliva )2018-09-06v4No1 / 16
290amnondominant homo sapiens, feces, adult, city, china2018-02-01v4No1 / 17
53amnondominant lima, homo sapiens, feces, city, shantytown2017-01-21v4No1 / 17
404amnon high in hard stool compared to normal stool in homo sapiens feces columbia city adult 2018-11-20v4No1 / 19
404amnonnegatively correlated with fiber intake ( high in low fiber compared to plant fiber cell high fiber in homo sapiens feces adult colombia city )2018-11-20v4No1 / 24
519amnon high in dentition supragingival plaque compared to saliva in homo sapiens adult late adult stage city china 2019-06-25v3No1 / 48
371amnonlower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )2018-09-06v4No1 / 52
682amnoncommon city, madrid, kingdom of spain, air2028-03-04v3No1 / 60
594amnon high in yaounde city compared to rural community ngoantet in adult cameroon feces homo sapiens 2020-03-12v4No1 / 62
404amnon high in barranquilla bucaramanga municipality of santiago de cali compared to bogota medellin metropolitan area in homo sapiens feces adult colombia city 2018-11-20v4No1 / 63
404amnoncommon homo sapiens, feces, colombia, city, adult2018-11-20v4No1 / 71
404amnon high in lean body mass low bmi compared to high bmi in homo sapiens feces adult colombia city 2018-11-20v4No1 / 76
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-06v4No1 / 76
550amnoncommon city, hokkaido, starfish, coelomic fluid, wild, patiria pectinifera, japan2019-08-18v4No1 / 77
513amnoncommon waste water, hospital, city, xinxiang city prefecture, china2019-03-25v4No1 / 78
430amnoncommon homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-15v4No1 / 79
404amnon high in female compared to male in homo sapiens feces adult colombia city 2018-11-20v4No1 / 80
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-06v4No1 / 86
519amnoncommon homo sapiens, adult, late adult stage, city, dentition, supragingival plaque, china2019-06-25v3No1 / 96
393amnon high in heterosexual msw compared to gay homosexual msm in homo sapiens feces united states of america adult state of colorado city 2018-11-06v4No1 / 99
276amnoncommon feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-22v4No1 / 102
53amnoncommon homo sapiens, feces, lima, city, shantytown2017-01-21v4No1 / 102
195amnoncommon in boston subway surfaces (common city, urban biome, train, boston)2017-09-07v4No1 / 108
393amnon high in gay homosexual msm compared to heterosexual msw in homo sapiens feces united states of america adult state of colorado city 2018-11-06v4No1 / 113
519amnoncommon homo sapiens, adult, late adult stage, city, saliva, china2019-06-25v3No1 / 126
475amnoncommon in air next to subway stations in hong kong (common air, hong kong, city)2019-01-20v4No1 / 139
53amnonhigher in sewer and wastewater influent comapred to feces in low income south america ( high in sewer wastewater treatment plant compared to feces in south america city low income )2017-01-21v4No1 / 140
594amnoncommon adult, cameroon, feces, homo sapiens, city, yaounde2020-03-12v4No1 / 146
53amnoncommon homo sapiens, feces, city, el salvador, small village2017-01-21v4No1 / 147
519amnon high in saliva compared to dentition supragingival plaque in homo sapiens adult late adult stage city china 2019-06-25v3No1 / 151
475amnoncommon in air in subway train in hong kong (common air, hong kong, city, subway)2019-01-20v4No1 / 153
290amnoncommon homo sapiens, feces, adult, city, china2018-02-01v4No1 / 154
337amnonhigher in manhattan compared to queens in feces of house mice from new york city ( high in manhatten region compared to queens region in mus musculus house mice mouse new york city united states of america city )2018-05-18v4No1 / 154
337amnoncommon in feces of house mice from new york city (common mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-18v4No1 / 157
276amnon high in united states of america city state of oklahoma compared to peru small village tunapuco rural community in feces homo sapiens adult 2018-01-22v4No1 / 160
594amnon high in ngoantet rural community compared to city yaounde in homo sapiens feces cameroon adult 2020-03-12v4No1 / 164
550amnon high in sea water compared to starfish wild coelomic fluid patiria pectinifera in city hokkaido japan 2019-08-18v4No1 / 177
53amnonlower in sewer and wastewater treatment plant influent compared to feces in south america ( high in feces homo sapiens compared to sewer wastewater treatment plant in south america city low income )2017-01-21v4No1 / 180
371amnonlower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )2018-09-06v4No1 / 187
53amnon high in shantytown lima compared to el salado small village in homo sapiens feces city 2017-01-21v4No1 / 229
404amnon high in medellin metropolitan area bogota compared to municipality of santiago de cali bucaramanga barranquilla in homo sapiens feces adult colombia city 2018-11-20v4No1 / 229
550amnon high in patiria pectinifera compared to asterias amurensis in city hokkaido starfish coelomic fluid wild japan 2019-08-18v4No1 / 270
128amnonhigher in ivy leaves from city compared to moor and forest ( high in city dense settlement biome compared to moor forest ecosystem in belgium ivy hedera ibernica leaf )2017-04-14v4No1 / 279
550amnoncommon city, hokkaido, sea water, japan2019-08-18v4No1 / 283
53amnon high in el salvador small village compared to lima shantytown in homo sapiens feces city 2017-01-21v4No1 / 288
254amnonhigher in river when close to populated region compared to downstream ( high in city populated place upstream compared to downstream in river water fresh water depth 0.5m jiulong river fujian province china )2017-11-23v4No1 / 348
337amnonlower in manhattan compared to queens in feces of house mice from new york city ( high in queens region compared to manhatten region in united states of america city mus musculus new york city mouse house mice )2018-05-18v4No1 / 354
550amnon high in sea water compared to starfish asterias amurensis coelomic fluid wild in city hokkaido japan 2019-08-18v4No1 / 381
371amnonlower in amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in feces homo sapiens )2018-09-06v4No1 / 409
53amnonlower in wastewater plant effluent compared to influent and sewer in south america ( high in sewage influent compared to effluent in south america wastewater treatment plant city )2017-01-21v4No1 / 432
371amnonhigher in amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in feces homo sapiens )2018-09-06v4No1 / 435
128amnoncommon belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-14v4No1 / 453
254amnonlower in river when close to populated region compared to downstream ( high in downstream compared to upstream city populated place in river water fresh water depth 0.5m jiulong river fujian province china )2017-11-23v4No1 / 460
276amnon high in peru small village tunapuco rural community compared to united states of america city state of oklahoma in feces homo sapiens adult 2018-01-22v4No1 / 461
128amnonhigher in ivy leaves from moor and forest compared to city ( high in moor forest ecosystem compared to city dense settlement biome in belgium ivy hedera ibernica leaf )2017-04-14v4No1 / 517
53amnonhigher in wastewater plant effluent compared to influent and sewer in south america ( high in effluent compared to influent sewage in south america city wastewater treatment plant )2017-01-21v4No1 / 649
371amnonhigher in skin of amerindians compared to western visitors ( high in venezuela hunter gatherer amerindian compared to city united states of america in homo sapiens skin )2018-09-06v4No1 / 846

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