Summary for ontology term: city

Number of annotations with term: 67

Annotations:

common ontology terms
term enrichment score
TermScore
city0.944882
colombia0.208696
LOWER IN city0.185676
adult0.144578
small village0.135747
state of colorado0.123711
homo sapiens0.112161
hong kong0.106667
house mice0.106667
ivy0.106667
hedera ibernica0.106667
LOWER IN united states of america0.101266
south america0.101266
new york city0.096386
belgium0.087912
LOWER IN small village0.084507
LOWER IN amerindian0.082192
LOWER IN hunter gatherer0.082192
LOWER IN venezuela0.082192
el salvador0.082192
shantytown0.082192
lima0.082192
vellore district0.082192
state of oklahoma0.078947
amerindian0.078947
venezuela0.078947
age 2 months0.078947
gay0.078947
homosexual0.078947
msm0.078947
heterosexual0.078947
msw0.078947
dense settlement biome0.078947
feces0.076492
hunter gatherer0.075949
wastewater treatment plant0.075949
air0.074766
india0.070588
china0.061146
LOWER IN rural community0.056338
rural community0.056338
train0.056338
boston0.056338
subway0.056338
columbia0.056338
depth 0.5m0.056338
jiulong river0.056338
fujian province0.056338
low income0.056338
state of arizona0.056338
age 200.056338
leaf0.055944
united states of america0.055676
urban biome0.053333
hospital0.051948
infant0.050847
river0.045977
fresh water0.043956
saliva0.037383
skin0.036697
mouse0.032922
water0.030075
mus musculus0.029520
LOWER IN peru0.028986
LOWER IN tunapuco0.028986
tunapuco0.028986
LOWER IN state of oklahoma0.028986
low hdl0.028986
LOWER IN high hdl0.028986
medellin metropolitan area0.028986
bogota0.028986
LOWER IN municipality of santiago de cali0.028986
LOWER IN bucaramanga0.028986
LOWER IN barranquilla0.028986
barranquilla0.028986
bucaramanga0.028986
municipality of santiago de cali0.028986
LOWER IN bogota0.028986
LOWER IN medellin metropolitan area0.028986
high filber0.028986
LOWER IN low fiber0.028986
high hdl0.028986
LOWER IN low hdl0.028986
normal stool0.028986
LOWER IN hard stool0.028986
hard stool0.028986
LOWER IN normal stool0.028986
low fiber0.028986
LOWER IN populated place0.028986
populated place0.028986
LOWER IN lima0.028986
LOWER IN shantytown0.028986
LOWER IN el salado0.028986
sewer0.028986
LOWER IN sewer0.028986
LOWER IN wastewater treatment plant0.028986
LOWER IN influent0.028986
LOWER IN sewage0.028986
sewage0.028986
influent0.028986
Fraction of dbbact annotations with this term covered by the query
TermScore
city1.000000
LOWER IN city0.833333
LOWER IN small village0.750000
small village0.750000
LOWER IN peru0.500000
LOWER IN tunapuco0.500000
LOWER IN rural community0.500000
tunapuco0.500000
rural community0.500000
LOWER IN state of oklahoma0.500000
LOWER IN amerindian0.500000
LOWER IN hunter gatherer0.500000
LOWER IN venezuela0.500000
train0.500000
boston0.500000
hong kong0.500000
subway0.500000
low hdl0.500000
LOWER IN high hdl0.500000
medellin metropolitan area0.500000
bogota0.500000
LOWER IN municipality of santiago de cali0.500000
LOWER IN bucaramanga0.500000
LOWER IN barranquilla0.500000
barranquilla0.500000
bucaramanga0.500000
municipality of santiago de cali0.500000
LOWER IN bogota0.500000
LOWER IN medellin metropolitan area0.500000
high filber0.500000
LOWER IN low fiber0.500000
high hdl0.500000
LOWER IN low hdl0.500000
columbia0.500000
normal stool0.500000
LOWER IN hard stool0.500000
hard stool0.500000
LOWER IN normal stool0.500000
low fiber0.500000
depth 0.5m0.500000
jiulong river0.500000
fujian province0.500000
LOWER IN populated place0.500000
populated place0.500000
el salvador0.500000
LOWER IN lima0.500000
LOWER IN shantytown0.500000
shantytown0.500000
lima0.500000
LOWER IN el salado0.500000
low income0.500000
sewer0.500000
LOWER IN sewer0.500000
LOWER IN wastewater treatment plant0.500000
LOWER IN influent0.500000
LOWER IN sewage0.500000
sewage0.500000
influent0.500000
LOWER IN effluent0.500000
vellore district0.500000
state of arizona0.500000
age 200.500000
house mice0.500000
queens region0.500000
LOWER IN manhatten region0.500000
manhatten region0.500000
LOWER IN queens region0.500000
ivy0.500000
hedera ibernica0.500000
LOWER IN forest0.500000
LOWER IN moor0.500000
moor0.500000
LOWER IN dense settlement biome0.500000
state of oklahoma0.333333
peru0.333333
LOWER IN united states of america0.333333
amerindian0.333333
venezuela0.333333
lean body mass0.333333
LOWER IN lean body mass0.333333
plant fiber cell0.333333
LOWER IN plant fiber cell0.333333
south america0.333333
age 2 months0.333333
probiotics0.333333
gay0.333333
homosexual0.333333
msm0.333333
LOWER IN heterosexual0.333333
LOWER IN msw0.333333
heterosexual0.333333
msw0.333333
LOWER IN gay0.333333
LOWER IN homosexual0.333333
LOWER IN msm0.333333
dense settlement biome0.333333
hunter gatherer0.250000
urban biome0.250000
colombia0.250000
LOWER IN high fiber0.250000
Fraction of annotations for the query sequences containing the term
TermScore
city0.895522
homo sapiens0.686567
feces0.582090
adult0.447761
united states of america0.268657
colombia0.179104
china0.119403
LOWER IN city0.104478
state of colorado0.089552
small village0.074627
LOWER IN united states of america0.059701
air0.059701
hong kong0.059701
south america0.059701
mus musculus0.059701
house mice0.059701
mouse0.059701
new york city0.059701
belgium0.059701
ivy0.059701
hedera ibernica0.059701
leaf0.059701
state of oklahoma0.044776
LOWER IN small village0.044776
hunter gatherer0.044776
amerindian0.044776
venezuela0.044776
LOWER IN amerindian0.044776
LOWER IN hunter gatherer0.044776
LOWER IN venezuela0.044776
el salvador0.044776
shantytown0.044776
lima0.044776
wastewater treatment plant0.044776
infant0.044776
india0.044776
vellore district0.044776
age 2 months0.044776
gay0.044776
homosexual0.044776
msm0.044776
heterosexual0.044776
msw0.044776
dense settlement biome0.044776
LOWER IN rural community0.029851
rural community0.029851
urban biome0.029851
train0.029851
boston0.029851
saliva0.029851
skin0.029851
subway0.029851
columbia0.029851
waste water0.029851
hospital0.029851
xinxiang city prefecture0.029851
river0.029851
water0.029851
fresh water0.029851
depth 0.5m0.029851
jiulong river0.029851
fujian province0.029851
low income0.029851
state of arizona0.029851
age 200.029851
LOWER IN peru0.014925
LOWER IN tunapuco0.014925
peru0.014925
tunapuco0.014925
LOWER IN state of oklahoma0.014925
low hdl0.014925
LOWER IN high hdl0.014925
medellin metropolitan area0.014925
bogota0.014925
LOWER IN municipality of santiago de cali0.014925
LOWER IN bucaramanga0.014925
LOWER IN barranquilla0.014925
barranquilla0.014925
bucaramanga0.014925
municipality of santiago de cali0.014925
LOWER IN bogota0.014925
LOWER IN medellin metropolitan area0.014925
lean body mass0.014925
low bmi0.014925
LOWER IN high bmi0.014925
high bmi0.014925
obesity0.014925
LOWER IN lean body mass0.014925
LOWER IN low bmi0.014925
plant fiber cell0.014925
high filber0.014925
LOWER IN low fiber0.014925
high hdl0.014925
LOWER IN low hdl0.014925
male0.014925
LOWER IN female0.014925
female0.014925
LOWER IN male0.014925
normal stool0.014925
LOWER IN hard stool0.014925
Exp. ID User ID Description Date Sequences
404amnonnegatively correlated with hdl levels ( high in low hdl compared to high hdl in colombia city adult feces homo sapiens )2019-01-101 / 4
332amnonhigher in infants treated with Lactobacillus rhamnosus GG probiotics compared to non-treated ( high in probiotics compared to control in homo sapiens infant india vellore district city age 2 months )2018-05-141 / 5
332amnoncommon homo sapiens, infant, india, vellore district, city, age 2 months2018-05-141 / 8
332amnonhighfreq homo sapiens, infant, india, vellore district, city, age 2 months2018-05-141 / 9
195amnonhigh freq. in boston subway surfaces (highfreq city, urban biome, train, boston)2017-09-071 / 11
475amnonhigh freq. in air in subway train in hong kong (highfreq air, hong kong, city, subway)2019-01-201 / 11
513amnonhighfreq china, waste water, hospital, city, xinxiang city prefecture2019-03-251 / 11
404amnon high in male compared to female in feces homo sapiens city adult colombia 2018-11-201 / 13
475amnonhigh freq. in air next to subway stations in hong kong (highfreq air, hong kong, city)2019-01-201 / 14
404amnon high in high bmi obesity compared to lean body mass low bmi in homo sapiens feces adult colombia city 2018-11-201 / 14
290amnon high in city compared to rural community small village in homo sapiens feces china adult 2018-02-011 / 14
393amnonhighfreq homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-061 / 14
276amnonhighfreq feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-221 / 15
404amnonpositively correlated with hdl levels ( high in high hdl compared to low hdl in colombia city adult feces homo sapiens )2019-01-101 / 17
337amnonhigh freq. in feces of house mice from new york city (highfreq mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-181 / 17
430amnonhighfreq homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-151 / 18
128amnonhighfreq belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-141 / 18
404amnonhighfreq homo sapiens, feces, colombia, city, adult2018-11-201 / 19
404amnon high in normal stool compared to hard stool in homo sapiens feces columbia city adult 2018-11-201 / 21
290amnon high in rural community small village compared to city in homo sapiens feces china adult 2018-02-011 / 21
393amnonhighfreq homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-061 / 21
404amnonpositively correlated with fiber intake ( high in plant fiber cell high filber compared to low fiber in homo sapiens feces adult colombia city )2018-11-201 / 22
53amnonhighfreq homo sapiens, feces, city, el salvador, small village2017-01-211 / 23
371amnonhigher in saliva of amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in homo sapiens saliva )2018-09-061 / 24
290amnonhighfreq homo sapiens, feces, china, adult, city2018-02-011 / 25
53amnonhighfreq lima, homo sapiens, feces, city, shantytown2017-01-211 / 25
404amnon high in hard stool compared to normal stool in homo sapiens feces columbia city adult 2018-11-201 / 27
404amnonnegatively correlated with fiber intake ( high in low fiber compared to plant fiber cell high fiber in homo sapiens feces adult colombia city )2018-11-201 / 32
371amnonlower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )2018-09-061 / 60
404amnon high in barranquilla bucaramanga municipality of santiago de cali compared to bogota medellin metropolitan area in homo sapiens feces adult colombia city 2018-11-201 / 71
404amnoncommon homo sapiens, feces, colombia, city, adult2018-11-201 / 79
404amnon high in lean body mass low bmi compared to high bmi in homo sapiens feces adult colombia city 2018-11-201 / 84
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-061 / 84
513amnoncommon china, waste water, hospital, city, xinxiang city prefecture2019-03-251 / 86
430amnoncommon homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-151 / 87
404amnon high in female compared to male in homo sapiens feces adult colombia city 2018-11-201 / 88
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-061 / 94
393amnon high in heterosexual msw compared to gay homosexual msm in homo sapiens feces united states of america adult state of colorado city 2018-11-061 / 107
276amnoncommon feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-221 / 110
53amnoncommon homo sapiens, feces, lima, city, shantytown2017-01-211 / 110
195amnoncommon in boston subway surfaces (common city, urban biome, train, boston)2017-09-071 / 116
393amnon high in gay homosexual msm compared to heterosexual msw in homo sapiens feces united states of america adult state of colorado city 2018-11-061 / 121
475amnoncommon in air next to subway stations in hong kong (common air, hong kong, city)2019-01-201 / 147
53amnonhigher in sewer and wastewater influent comapred to feces in low income south america ( high in sewer wastewater treatment plant compared to feces in south america city low income )2017-01-211 / 148
53amnoncommon homo sapiens, feces, city, el salvador, small village2017-01-211 / 155
475amnoncommon in air in subway train in hong kong (common air, hong kong, city, subway)2019-01-201 / 161
290amnoncommon homo sapiens, feces, china, adult, city2018-02-011 / 162
337amnonhigher in manhattan compared to queens in feces of house mice from new york city ( high in manhatten region compared to queens region in mus musculus house mice mouse new york city united states of america city )2018-05-181 / 162
337amnoncommon in feces of house mice from new york city (common mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-181 / 165
276amnon high in united states of america city state of oklahoma compared to peru small village tunapuco rural community in feces homo sapiens adult 2018-01-221 / 168
53amnonlower in sewer and wastewater treatment plant influent compared to feces in south america ( high in feces homo sapiens compared to sewer wastewater treatment plant in south america city low income )2017-01-211 / 188
371amnonlower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )2018-09-061 / 195
404amnon high in medellin metropolitan area bogota compared to municipality of santiago de cali bucaramanga barranquilla in homo sapiens feces adult colombia city 2018-11-201 / 237
53amnon high in shantytown lima compared to el salado small village in homo sapiens feces city 2017-01-211 / 237
128amnonhigher in ivy leaves from city compared to moor and forest ( high in city dense settlement biome compared to forest moor in belgium ivy hedera ibernica leaf )2017-04-141 / 287
53amnon high in el salvador small village compared to lima shantytown in homo sapiens feces city 2017-01-211 / 296
254amnonhigher in river when close to populated region compared to downstream ( high in city populated place upstream compared to downstream in river china water fresh water depth 0.5m jiulong river fujian province )2017-11-231 / 356
337amnonlower in manhattan compared to queens in feces of house mice from new york city ( high in queens region compared to manhatten region in united states of america city mus musculus new york city mouse house mice )2018-05-181 / 362
371amnonlower in amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in feces homo sapiens )2018-09-061 / 417
53amnonlower in wastewater plant effluent compared to influent and sewer in south america ( high in sewage influent compared to effluent in south america wastewater treatment plant city )2017-01-211 / 440
371amnonhigher in amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in feces homo sapiens )2018-09-061 / 443
128amnoncommon belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-141 / 461
254amnonlower in river when close to populated region compared to downstream ( high in downstream compared to upstream city populated place in river china water fresh water depth 0.5m jiulong river fujian province )2017-11-231 / 468
276amnon high in peru small village tunapuco rural community compared to united states of america city state of oklahoma in feces homo sapiens adult 2018-01-221 / 469
128amnonhigher in ivy leaves from moor and forest compared to city ( high in moor forest compared to city dense settlement biome in belgium ivy hedera ibernica leaf )2017-04-141 / 525
53amnonhigher in wastewater plant effluent compared to influent and sewer in south america ( high in effluent compared to influent sewage in south america city wastewater treatment plant )2017-01-211 / 657
371amnonhigher in skin of amerindians compared to western visitors ( high in venezuela hunter gatherer amerindian compared to city united states of america in homo sapiens skin )2018-09-061 / 854

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