Summary for ontology term: city

Number of annotations with term: 87

Annotations:

common ontology terms
term enrichment score
TermScore
city0.930233
hokkaido0.195122
colombia0.163265
late adult stage0.155340
starfish0.155340
LOWER IN city0.146751
coelomic fluid0.144144
adult0.132251
japan0.109589
small village0.106762
homo sapiens0.106195
state of colorado0.093023
wild0.087432
hong kong0.084211
asterias amurensis0.084211
patiria pectinifera0.084211
house mice0.084211
ivy0.084211
hedera ibernica0.084211
south america0.080808
saliva0.080229
LOWER IN united states of america0.077670
new york city0.077670
china0.074941
belgium0.072072
LOWER IN small village0.065934
feces0.065847
vellore district0.064516
LOWER IN amerindian0.064516
LOWER IN hunter gatherer0.064516
LOWER IN venezuela0.064516
el salvador0.064516
shantytown0.064516
lima0.064516
age 2 months0.062500
state of oklahoma0.062500
amerindian0.062500
venezuela0.062500
gay0.062500
homosexual0.062500
msm0.062500
heterosexual0.062500
msw0.062500
dense settlement biome0.062500
air0.061069
hunter gatherer0.060606
wastewater treatment plant0.060606
supragingival plaque0.060606
india0.057143
sea water0.054422
ocean water0.050314
leaf0.049080
united states of america0.048504
dentition0.045455
train0.043956
boston0.043956
subway0.043956
columbia0.043956
waste water0.043956
xinxiang city prefecture0.043956
jiulong river0.043956
fujian province0.043956
LOWER IN patiria pectinifera0.043956
LOWER IN coelomic fluid0.043956
LOWER IN starfish0.043956
LOWER IN asterias amurensis0.043956
low income0.043956
age 200.043956
LOWER IN rural community0.043478
depth 0.5m0.043011
rural community0.042553
infant0.042553
urban biome0.042105
LOWER IN ocean water0.042105
state of arizona0.042105
hospital0.040404
LOWER IN sea water0.040404
LOWER IN wild0.038835
river0.036036
fresh water0.032520
skin0.029630
mouse0.028269
mus musculus0.025723
LOWER IN peru0.022472
LOWER IN tunapuco0.022472
tunapuco0.022472
LOWER IN state of oklahoma0.022472
low hdl0.022472
LOWER IN high hdl0.022472
bogota0.022472
LOWER IN municipality of santiago de cali0.022472
LOWER IN bucaramanga0.022472
LOWER IN barranquilla0.022472
barranquilla0.022472
bucaramanga0.022472
municipality of santiago de cali0.022472
LOWER IN bogota0.022472
LOWER IN medellin metropolitan area0.022472
high filber0.022472
LOWER IN low fiber0.022472
Fraction of dbbact annotations with this term covered by the query
TermScore
city0.941176
LOWER IN city0.833333
LOWER IN small village0.750000
small village0.750000
vellore district0.500000
LOWER IN peru0.500000
LOWER IN tunapuco0.500000
tunapuco0.500000
LOWER IN state of oklahoma0.500000
LOWER IN amerindian0.500000
LOWER IN hunter gatherer0.500000
LOWER IN venezuela0.500000
train0.500000
boston0.500000
hong kong0.500000
subway0.500000
low hdl0.500000
LOWER IN high hdl0.500000
bogota0.500000
LOWER IN municipality of santiago de cali0.500000
LOWER IN bucaramanga0.500000
LOWER IN barranquilla0.500000
barranquilla0.500000
bucaramanga0.500000
municipality of santiago de cali0.500000
LOWER IN bogota0.500000
LOWER IN medellin metropolitan area0.500000
high filber0.500000
LOWER IN low fiber0.500000
high hdl0.500000
LOWER IN low hdl0.500000
columbia0.500000
normal stool0.500000
LOWER IN hard stool0.500000
hard stool0.500000
LOWER IN normal stool0.500000
low fiber0.500000
waste water0.500000
xinxiang city prefecture0.500000
jiulong river0.500000
fujian province0.500000
LOWER IN populated place0.500000
populated place0.500000
late adult stage0.500000
asterias amurensis0.500000
starfish0.500000
patiria pectinifera0.500000
LOWER IN patiria pectinifera0.500000
LOWER IN coelomic fluid0.500000
LOWER IN starfish0.500000
LOWER IN asterias amurensis0.500000
el salvador0.500000
LOWER IN lima0.500000
LOWER IN shantytown0.500000
shantytown0.500000
lima0.500000
LOWER IN el salado0.500000
low income0.500000
sewer0.500000
LOWER IN sewer0.500000
LOWER IN wastewater treatment plant0.500000
LOWER IN influent0.500000
LOWER IN sewage0.500000
sewage0.500000
influent0.500000
LOWER IN effluent0.500000
dental caries0.500000
age 200.500000
house mice0.500000
queens region0.500000
LOWER IN manhatten region0.500000
manhatten region0.500000
LOWER IN queens region0.500000
LOWER IN dental caries0.500000
ivy0.500000
hedera ibernica0.500000
LOWER IN forest0.500000
LOWER IN moor0.500000
moor0.500000
LOWER IN dense settlement biome0.500000
LOWER IN rural community0.400000
age 2 months0.333333
probiotics0.333333
state of oklahoma0.333333
peru0.333333
amerindian0.333333
venezuela0.333333
medellin metropolitan area0.333333
lean body mass0.333333
LOWER IN lean body mass0.333333
plant fiber cell0.333333
LOWER IN plant fiber cell0.333333
depth 0.5m0.333333
hokkaido0.333333
coelomic fluid0.333333
south america0.333333
LOWER IN supragingival plaque0.333333
gay0.333333
homosexual0.333333
msm0.333333
Fraction of annotations for the query sequences containing the term
TermScore
city0.919540
homo sapiens0.620690
feces0.448276
adult0.436782
united states of america0.206897
china0.183908
colombia0.137931
japan0.137931
hokkaido0.137931
late adult stage0.091954
wild0.091954
coelomic fluid0.091954
starfish0.091954
LOWER IN city0.080460
saliva0.080460
state of colorado0.068966
small village0.057471
LOWER IN united states of america0.045977
air0.045977
hong kong0.045977
ocean water0.045977
sea water0.045977
asterias amurensis0.045977
patiria pectinifera0.045977
south america0.045977
mus musculus0.045977
house mice0.045977
mouse0.045977
new york city0.045977
belgium0.045977
ivy0.045977
hedera ibernica0.045977
leaf0.045977
infant0.034483
india0.034483
vellore district0.034483
age 2 months0.034483
state of oklahoma0.034483
LOWER IN small village0.034483
hunter gatherer0.034483
amerindian0.034483
venezuela0.034483
LOWER IN amerindian0.034483
LOWER IN hunter gatherer0.034483
LOWER IN venezuela0.034483
el salvador0.034483
shantytown0.034483
lima0.034483
wastewater treatment plant0.034483
supragingival plaque0.034483
dentition0.034483
gay0.034483
homosexual0.034483
msm0.034483
heterosexual0.034483
msw0.034483
dense settlement biome0.034483
LOWER IN control0.022989
LOWER IN rural community0.022989
rural community0.022989
urban biome0.022989
train0.022989
boston0.022989
skin0.022989
subway0.022989
columbia0.022989
waste water0.022989
hospital0.022989
xinxiang city prefecture0.022989
river0.022989
water0.022989
fresh water0.022989
depth 0.5m0.022989
jiulong river0.022989
fujian province0.022989
LOWER IN ocean water0.022989
LOWER IN sea water0.022989
LOWER IN patiria pectinifera0.022989
LOWER IN coelomic fluid0.022989
LOWER IN wild0.022989
LOWER IN starfish0.022989
LOWER IN asterias amurensis0.022989
low income0.022989
state of arizona0.022989
age 200.022989
probiotics0.011494
LOWER IN peru0.011494
LOWER IN tunapuco0.011494
peru0.011494
tunapuco0.011494
LOWER IN state of oklahoma0.011494
low hdl0.011494
LOWER IN high hdl0.011494
medellin metropolitan area0.011494
bogota0.011494
LOWER IN municipality of santiago de cali0.011494
LOWER IN bucaramanga0.011494
LOWER IN barranquilla0.011494
barranquilla0.011494
bucaramanga0.011494
Exp. ID User ID Description Date Region Flag Sequences
404amnonnegatively correlated with hdl levels ( high in low hdl compared to high hdl in colombia city adult feces homo sapiens )2019-01-10v4No1 / 4
332amnonhigher in infants treated with Lactobacillus rhamnosus GG probiotics compared to non-treated ( high in probiotics compared to control in homo sapiens infant india vellore district city age 2 months )2018-05-14v4No1 / 5
550amnonhighfreq patiria pectinifera, wild, coelomic fluid, starfish, japan, hokkaido, city2019-08-18v4No1 / 5
550amnon high in asterias amurensis coelomic fluid wild starfish compared to ocean water sea water in japan hokkaido city 2019-08-18v4No1 / 5
519amnon high in control compared to dental caries in saliva city late adult stage adult china homo sapiens 2019-06-25v3No1 / 5
550amnonhighfreq wild, coelomic fluid, asterias amurensis, starfish, japan, hokkaido, city2019-08-18v4No1 / 6
550amnon high in asterias amurensis compared to patiria pectinifera in wild coelomic fluid starfish japan hokkaido city 2019-08-18v4No1 / 7
332amnoncommon homo sapiens, infant, india, vellore district, city, age 2 months2018-05-14v4No1 / 8
332amnonhighfreq homo sapiens, infant, india, vellore district, city, age 2 months2018-05-14v4No1 / 9
519amnon high in dental caries compared to control in saliva city late adult stage adult china homo sapiens 2019-06-25v3No1 / 10
195amnonhigh freq. in boston subway surfaces (highfreq city, urban biome, train, boston)2017-09-07v4No1 / 11
475amnonhigh freq. in air in subway train in hong kong (highfreq air, hong kong, city, subway)2019-01-20v4No1 / 11
513amnonhighfreq china, waste water, hospital, city, xinxiang city prefecture2019-03-25v4No1 / 11
404amnon high in male compared to female in feces homo sapiens city adult colombia 2018-11-20v4No1 / 13
475amnonhigh freq. in air next to subway stations in hong kong (highfreq air, hong kong, city)2019-01-20v4No1 / 14
404amnon high in high bmi obesity compared to lean body mass low bmi in homo sapiens feces adult colombia city 2018-11-20v4No1 / 14
290amnon high in city compared to rural community small village in homo sapiens feces china adult 2018-02-01v4No1 / 14
393amnonhighfreq homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-06v4No1 / 14
276amnonhighfreq feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-22v4No1 / 15
550amnoncommon wild, coelomic fluid, asterias amurensis, starfish, japan, hokkaido, city2019-08-18v4No1 / 15
550amnon high in patiria pectinifera wild coelomic fluid starfish compared to ocean water sea water in japan hokkaido city 2019-08-18v4No1 / 15
519amnonhighfreq saliva, city, late adult stage, adult, china, homo sapiens2019-06-25v3No1 / 16
404amnonpositively correlated with hdl levels ( high in high hdl compared to low hdl in colombia city adult feces homo sapiens )2019-01-10v4No1 / 17
337amnonhigh freq. in feces of house mice from new york city (highfreq mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-18v4No1 / 17
430amnonhighfreq homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-15v4No1 / 18
519amnonhighfreq supragingival plaque, dentition, city, late adult stage, adult, china, homo sapiens2019-06-25v3No1 / 18
128amnonhighfreq belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-14v4No1 / 18
404amnonhighfreq homo sapiens, feces, colombia, city, adult2018-11-20v4No1 / 19
550amnonhighfreq ocean water, city, hokkaido, japan, sea water2019-08-18v4No1 / 20
404amnon high in normal stool compared to hard stool in homo sapiens feces columbia city adult 2018-11-20v4No1 / 21
290amnon high in rural community small village compared to city in homo sapiens feces china adult 2018-02-01v4No1 / 21
393amnonhighfreq homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-06v4No1 / 21
404amnonpositively correlated with fiber intake ( high in plant fiber cell high filber compared to low fiber in homo sapiens feces adult colombia city )2018-11-20v4No1 / 22
53amnonhighfreq homo sapiens, feces, city, el salvador, small village2017-01-21v4No1 / 23
371amnonhigher in saliva of amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in homo sapiens saliva )2018-09-06v4No1 / 24
290amnonhighfreq homo sapiens, feces, china, adult, city2018-02-01v4No1 / 25
53amnonhighfreq lima, homo sapiens, feces, city, shantytown2017-01-21v4No1 / 25
404amnon high in hard stool compared to normal stool in homo sapiens feces columbia city adult 2018-11-20v4No1 / 27
404amnonnegatively correlated with fiber intake ( high in low fiber compared to plant fiber cell high fiber in homo sapiens feces adult colombia city )2018-11-20v4No1 / 32
519amnon high in supragingival plaque dentition compared to saliva in city late adult stage adult china homo sapiens 2019-06-25v3No1 / 56
371amnonlower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )2018-09-06v4No1 / 60
404amnon high in barranquilla bucaramanga municipality of santiago de cali compared to bogota medellin metropolitan area in homo sapiens feces adult colombia city 2018-11-20v4No1 / 71
404amnoncommon homo sapiens, feces, colombia, city, adult2018-11-20v4No1 / 79
404amnon high in lean body mass low bmi compared to high bmi in homo sapiens feces adult colombia city 2018-11-20v4No1 / 84
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msw, heterosexual2018-11-06v4No1 / 84
550amnoncommon patiria pectinifera, wild, coelomic fluid, starfish, japan, hokkaido, city2019-08-18v4No1 / 85
513amnoncommon china, waste water, hospital, city, xinxiang city prefecture2019-03-25v4No1 / 86
430amnoncommon homo sapiens, adult, united states of america, state of arizona, city, age 20, feces2018-12-15v4No1 / 87
404amnon high in female compared to male in homo sapiens feces adult colombia city 2018-11-20v4No1 / 88
393amnoncommon homo sapiens, feces, united states of america, adult, state of colorado, city, msm, gay, homosexual2018-11-06v4No1 / 94
519amnoncommon supragingival plaque, dentition, city, late adult stage, adult, china, homo sapiens2019-06-25v3No1 / 104
393amnon high in heterosexual msw compared to gay homosexual msm in homo sapiens feces united states of america adult state of colorado city 2018-11-06v4No1 / 107
276amnoncommon feces, homo sapiens, united states of america, city, state of oklahoma, adult2018-01-22v4No1 / 110
53amnoncommon homo sapiens, feces, lima, city, shantytown2017-01-21v4No1 / 110
195amnoncommon in boston subway surfaces (common city, urban biome, train, boston)2017-09-07v4No1 / 116
393amnon high in gay homosexual msm compared to heterosexual msw in homo sapiens feces united states of america adult state of colorado city 2018-11-06v4No1 / 121
519amnoncommon saliva, city, late adult stage, adult, china, homo sapiens2019-06-25v3No1 / 134
475amnoncommon in air next to subway stations in hong kong (common air, hong kong, city)2019-01-20v4No1 / 147
53amnonhigher in sewer and wastewater influent comapred to feces in low income south america ( high in sewer wastewater treatment plant compared to feces in south america city low income )2017-01-21v4No1 / 148
53amnoncommon homo sapiens, feces, city, el salvador, small village2017-01-21v4No1 / 155
519amnon high in saliva compared to supragingival plaque dentition in city late adult stage adult china homo sapiens 2019-06-25v3No1 / 159
475amnoncommon in air in subway train in hong kong (common air, hong kong, city, subway)2019-01-20v4No1 / 161
290amnoncommon homo sapiens, feces, china, adult, city2018-02-01v4No1 / 162
337amnonhigher in manhattan compared to queens in feces of house mice from new york city ( high in manhatten region compared to queens region in mus musculus house mice mouse new york city united states of america city )2018-05-18v4No1 / 162
337amnoncommon in feces of house mice from new york city (common mus musculus, house mice, mouse, new york city, united states of america, city)2018-05-18v4No1 / 165
276amnon high in united states of america city state of oklahoma compared to peru small village tunapuco rural community in feces homo sapiens adult 2018-01-22v4No1 / 168
550amnon high in sea water ocean water compared to patiria pectinifera coelomic fluid wild starfish in japan hokkaido city 2019-08-18v4No1 / 185
53amnonlower in sewer and wastewater treatment plant influent compared to feces in south america ( high in feces homo sapiens compared to sewer wastewater treatment plant in south america city low income )2017-01-21v4No1 / 188
371amnonlower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )2018-09-06v4No1 / 195
404amnon high in medellin metropolitan area bogota compared to municipality of santiago de cali bucaramanga barranquilla in homo sapiens feces adult colombia city 2018-11-20v4No1 / 237
53amnon high in shantytown lima compared to el salado small village in homo sapiens feces city 2017-01-21v4No1 / 237
550amnon high in patiria pectinifera compared to asterias amurensis in wild coelomic fluid starfish japan hokkaido city 2019-08-18v4No1 / 278
128amnonhigher in ivy leaves from city compared to moor and forest ( high in city dense settlement biome compared to forest moor in belgium ivy hedera ibernica leaf )2017-04-14v4No1 / 287
550amnoncommon ocean water, sea water, japan, hokkaido, city2019-08-18v4No1 / 291
53amnon high in el salvador small village compared to lima shantytown in homo sapiens feces city 2017-01-21v4No1 / 296
254amnonhigher in river when close to populated region compared to downstream ( high in city populated place upstream compared to downstream in river china water fresh water depth 0.5m jiulong river fujian province )2017-11-23v4No1 / 356
337amnonlower in manhattan compared to queens in feces of house mice from new york city ( high in queens region compared to manhatten region in united states of america city mus musculus new york city mouse house mice )2018-05-18v4No1 / 362
550amnon high in ocean water sea water compared to wild coelomic fluid asterias amurensis starfish in japan hokkaido city 2019-08-18v4No1 / 389
371amnonlower in amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in feces homo sapiens )2018-09-06v4No1 / 417
53amnonlower in wastewater plant effluent compared to influent and sewer in south america ( high in sewage influent compared to effluent in south america wastewater treatment plant city )2017-01-21v4No1 / 440
371amnonhigher in amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in feces homo sapiens )2018-09-06v4No1 / 443
128amnoncommon belgium, ivy, hedera ibernica, leaf, city, dense settlement biome2017-04-14v4No1 / 461
254amnonlower in river when close to populated region compared to downstream ( high in downstream compared to upstream city populated place in river china water fresh water depth 0.5m jiulong river fujian province )2017-11-23v4No1 / 468
276amnon high in peru small village tunapuco rural community compared to united states of america city state of oklahoma in feces homo sapiens adult 2018-01-22v4No1 / 469
128amnonhigher in ivy leaves from moor and forest compared to city ( high in moor forest compared to city dense settlement biome in belgium ivy hedera ibernica leaf )2017-04-14v4No1 / 525
53amnonhigher in wastewater plant effluent compared to influent and sewer in south america ( high in effluent compared to influent sewage in south america city wastewater treatment plant )2017-01-21v4No1 / 657
371amnonhigher in skin of amerindians compared to western visitors ( high in venezuela hunter gatherer amerindian compared to city united states of america in homo sapiens skin )2018-09-06v4No1 / 854

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