Summary for ontology term: cloaca

Number of annotations with term: 32

Top positive-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Actinomycetales;f__Corynebacteriaceae;g__CorynebacteriumTGGGGAATATTGCACAATGGGCGGAAGCCTGATGCAGCGACGCCGCGTGGGGGATGACGGCCTTCGGGTTGTAAACTCCTTTCACCATCGACGAAGGGTTTCTGACGGTAGGTGGAGAAGAAGCACCGGCTAACTACGTGCCAGCAGCCG0.066667
d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__StaphylococcusTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGTGATGAAGGGTTTCGGCTCGTAAAACTCTGTTATTAGGGAAGAACAAATGTGTAAGTAACTGTGCACGTCTTGACGGTACCTAATCAGAAAGCCACGGC0.066667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTTCTCAGGGACGAAGCAAGTGACGGTACCTGAGGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCG0.066667
d__BacteriaTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAGTGATGAAGGTCTTCGGATTGTAAAACTCTTTAAGCAGGGAAGAAGAAAGTGACGGTACCTGCAGAATAAGCATCGGCTAACTACGTGCCAGCAGCCGCG0.066667
d__BacteriaTGGGGAATATTGGGCAATGGAGGAAACTCTGACCCAGCAACGCCGCGTGAATGATGAAGGTCTTCGGATTGTAAAGTTCTTTTCTAAGGGACGAAGAAAGTGACGGTACCTTAGGAATAAGCCTCGGCTAACTACGTGCCAGCAGCCGCG0.066667
d__BacteriaTGGGGAATATTGGGCAATGGAGGCAACTCTGACCCAGCAATGCCGCGTGAATGAAGAAGGTCTTCGGATTGTAAAGTTCTTTAATCAGGGACGAACAAGGTGACGGTACCTGAGGAATAAGCCACGGCAAACTATGTGCCAGCAGCCGCG0.066667
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__AerococcusTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAGTGAAGAAGGCCTTCGGGTCGTAAAACTCTGTTATAAGAGAAGAACAAATTGTAGAGTAACTGCTACAGTCTTGACGGTATCTTATCAGAAAGCCACGGC0.066667
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__Enterobacteriaceae;g__ProteusTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTAGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGTGATAAGGTTAATACCCTTGTCAATTGACGTTACCCGCAGAAGAAGCACCGGC0.066667
d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__StaphylococcusTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGTGATGAAGGGTTTCGGCTCGTAAAACTCTGTTATTAGGGAAGAACAAACGTGTAAGTAACTGTGCACGTCTTGACGGTACCTAATCAGAAAGCCACGGC0.066667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1;g__Clostridium sensu strictoTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTCTTCAGGGACGATAATGACGGTACCTGAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA0.066667

Top negative-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__StreptococcusTAGGTAATCTTCGGCAATGGGGGCAACCCTGACCGAGCAACGCCGCGTGAGTGAAGAAGGTTTTCGGATCGTAAAGCTCTGTTGTAAGAGAAGAACGTGTGTGAGAGTGGAAAGTTCACACAGTGACGGTAACTTACCAGAAAGGGACGG0.500000
d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Listeriaceae;g__ListeriaTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGTATGAAGAAGGTTTTCGGATCGTAAAGTACTGTTGTTAGAGAAGAACAAGGATAAGAGTAACTGCTTGTCCCTTGACGGTATCTAACCAGAAAGCCACGGC0.500000
d__Bacteria;p__Firmicutes;c__Bacilli;o__BacillalesTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTTGTTAGGGAAGAACAAGTACCGTTCGAATAGGGCGGTACCTTGACGGTACCTAACCAGAAAGCCACGG0.500000
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAGGGAAGAAGGTTTTCGGATTGTAAACCTCTGTCTTTGGTGAAGAAGAAAGTGACGGTAACCAAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCGCG0.250000
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAAGGAGGAAGGTTTTCGGATTGTAAACTTCTATCAGCAAGGAAGAAAAAGGACAGTACTTGAGTAAGCAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT0.250000
d__BacteriaATCATCAATTCCGCCTACAAGTACGGAAGAAAAGTGGTGGTGGAAGGCCGCAGCATGGTGAACGTCATCAGCACGGCGTCAGAGCTGGGCTATCTGAATATACCGGACAATACCCTGATTGACCTGGAGAGAATGAAAAATTATCCGGAC0.250000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__FaecalibacteriumTGGGTAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGAGGAAGAAGGTCTTCGGATTGTAAACTCCTGTTGTTGGGGAAAAAGAGGATGGTACCCAACAAGGAAGTGACGGCTAACTACGTGCCAGCAGCCGCGGTA0.250000
d__Bacteria;p__FirmicutesTGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGGGAAGACGGTCCTCTGGATTGTAAACCTCTGTCGGAAGGGACGATAATGACGGTACCTTCCGAGGAAGCTCCGGCTAACTACGTGCCAGCAGCCGCGGT0.250000
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCGTGAAGGATGAAGGTCTTCGGATCGTAAACTTCTATCAGCAGGGAAGAATACCATGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG0.250000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGAATATTGGGCAATGGGGGCAACCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTGACAAGGGACGAAATAAATGACGGTACCTTGAAAACAAGCCACGGCTAACTACGTGCCAGCAGCCGCG0.250000

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__"Proteobacteria";c__GammaproteobacteriaTACGGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGGCTGATAAGTCAGATGTGAAAGCCCTGGGCTTAACCTAGGAACTGCATTTGATACTGTCAGCCTTGAGTATGGTAGAGGTAAGCGGAATTTCCAG0.277778
d__Bacteria;p__"Bacteroidetes";c__Sphingobacteriia;o__"Sphingobacteriales";f__"Saprospiraceae"TACGGAGGGTGCAAGCGTTATCCGGAATCACTGGGTTTAAAGGGTGCGTAGGCGGCATTATAAGTCAGAAGTGAAAGCCCTCCGCTTAACGGGGGAACTGCTTTTGATACTGTAGTGCTTGAATCAGGTTGAGGTTAGCGGAATGTGACA0.228571
d__Bacteria;p__"Proteobacteria";c__GammaproteobacteriaTACGGATGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGTTTATTAAGTCAGATGTGAAAGCCCCGGGCTCAACCTGGGAACTGCATTTGATACTGGTAGGCTAGAGTATGTTAGAGGAAAGTGGAATTTCGGG0.228571
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Pseudomonadales;f__MoraxellaceaeTACAGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGCGTAGGTGGCTAACCCAGTCAGATGTGAAATCCCCGGGCTTAACCTGGGAACTGCATCTGATACTAGTTAGCTAGAGTATGTGAGAGGGAAGTAGAATTCCAGG0.228571
d__Bacteria;p__"Proteobacteria";c__GammaproteobacteriaTACAGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTTGGTCAGTCAGATGTGAAAGCCCAGGGCTTAACCTTGGAACTGCATCTGATACTGCCAGACTAGAGTATGTGAGAGGGAAGTAGAATTCCAGG0.228571
d__Bacteria;p__"Proteobacteria"TACGAAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGGGTGCGCAGGCGGCTCTTTAAGTCTGATGTGAAAGCCCCGGGCTCAACCTGGGAACTGCATTGGATACTGGAGAGCTAGAGTGCGATAGAGGGTGGTGGAATTTCCGG0.228571
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Rhodobacterales;f__RhodobacteraceaeTACGGAGGGGGTTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGTACGTAGGCGGTTTGAAAAGTTAGAGGTGAAATCCCAGGGCTCAACCCTGGAACTGCCTTTAAAACTAGCAGACTAGAGTTCGAGAGAGGTGAGTGGAATTCCGAG0.228571
d__Bacteria;p__"Proteobacteria";c__GammaproteobacteriaTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGATAATTAAGTCAGATGTGAAAGCCCTGGGCTTAACCTAGGAACTGCATTTGATACTGGTTATCTTGAGTATGGTAGAGGTAAGCGGAATTTCCAG0.228571
d__Bacteria;p__"Proteobacteria";c__AlphaproteobacteriaTACGAAGGGGGCTAGCGTTGTTCGGAATCACTGGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTCAGGGGTGAAATCCCGAGGCTCAACCTCGGAACTGCCTTTGATACTGGAAGTCTTGAGTCCGAGAGAGGTGAGTGGAACTCCGAG0.222222
d__Bacteria;p__"Bacteroidetes";c__Flavobacteriia;o__"Flavobacteriales";f__FlavobacteriaceaeTACGGAGGGTGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTCCGTAGGCGGGCTAATAAGTCAGTAGTGAAATCTTGTCGCTTAACGATAAAACTGCTATTGATACTGTTAGTCTTGAGTGTATTTGAAGTAGCTGGAATGAGTAG0.205128

Annotations:

common ontology terms
term enrichment score
TermScore
cloaca0.897485
cobb broiler chicken0.272727
amblyrhynchus cristatus0.272727
cloacal swab0.272727
marine iguana0.272727
gulf of mexico0.272727
age 35 days0.240000
galapagos islands0.240000
alimentary part of gastrointestinal system0.240000
green turtle0.240000
chelonia mydas0.240000
mallard0.200000
gymnogyps californianus0.200000
california condor0.200000
state of idaho0.181818
chicken0.166667
anas platyrhynchos0.166667
ecuador0.162162
gallus gallus0.160000
pelagic zone0.157895
neritic zone0.157895
LOWER IN cloaca0.131868
age 90 weeks0.111111
shinisaurus crocodilurus0.111111
crocodile lizard0.111111
junco hyemalis0.111111
songbird0.111111
bird0.095238
male0.094915
commonwealth of virginia0.086957
autumn0.084507
adult organism0.083333
captive0.076923
summer0.059406
LOWER IN influenza0.058824
state of california0.058824
influenza0.058824
LOWER IN pelagic zone0.058824
LOWER IN neritic zone0.058824
high body condition index0.058824
LOWER IN low body condition index0.058824
low body condition index0.058824
LOWER IN high body condition index0.058824
male organism0.048780
LOWER IN male organism0.048780
LOWER IN female organism0.044444
LOWER IN autumn0.044444
female organism0.044444
ileum0.041667
LOWER IN ileum0.041667
LOWER IN summer0.036364
LOWER IN male0.030769
caecum0.029412
LOWER IN caecum0.029412
research facility0.025806
china0.021277
LOWER IN female0.021053
female0.021053
control0.009217
LOWER IN control0.009217
feces0.005780
LOWER IN feces0.005780
Fraction of dbbact annotations with this term covered by the query
TermScore
cloaca0.888889
cobb broiler chicken0.500000
amblyrhynchus cristatus0.500000
cloacal swab0.500000
marine iguana0.500000
LOWER IN influenza0.500000
mallard0.500000
influenza0.500000
age 90 weeks0.500000
shinisaurus crocodilurus0.500000
crocodile lizard0.500000
junco hyemalis0.500000
songbird0.500000
gymnogyps californianus0.500000
california condor0.500000
pelagic zone0.500000
gulf of mexico0.500000
neritic zone0.500000
LOWER IN pelagic zone0.500000
LOWER IN neritic zone0.500000
high body condition index0.500000
LOWER IN low body condition index0.500000
low body condition index0.500000
LOWER IN high body condition index0.500000
age 35 days0.333333
galapagos islands0.333333
alimentary part of gastrointestinal system0.333333
state of idaho0.333333
green turtle0.333333
chelonia mydas0.333333
anas platyrhynchos0.250000
LOWER IN cloaca0.222222
ecuador0.142857
commonwealth of virginia0.142857
chicken0.125000
adult organism0.125000
gallus gallus0.117647
male organism0.111111
LOWER IN male organism0.111111
LOWER IN female organism0.076923
bird0.076923
autumn0.076923
LOWER IN autumn0.076923
female organism0.076923
ileum0.062500
LOWER IN ileum0.062500
male0.060606
captive0.055556
summer0.043478
LOWER IN summer0.043478
state of california0.038462
LOWER IN male0.030303
caecum0.027778
LOWER IN caecum0.027778
LOWER IN female0.015873
female0.015873
research facility0.013605
china0.011628
control0.005405
LOWER IN control0.005405
feces0.003185
LOWER IN feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
cloaca0.906250
research facility0.250000
gallus gallus0.250000
chicken0.250000
male0.218750
cobb broiler chicken0.187500
age 35 days0.187500
ecuador0.187500
galapagos islands0.187500
alimentary part of gastrointestinal system0.187500
amblyrhynchus cristatus0.187500
cloacal swab0.187500
marine iguana0.187500
gulf of mexico0.187500
green turtle0.187500
chelonia mydas0.187500
anas platyrhynchos0.125000
state of california0.125000
mallard0.125000
china0.125000
state of idaho0.125000
bird0.125000
captive0.125000
gymnogyps californianus0.125000
california condor0.125000
LOWER IN cloaca0.093750
pelagic zone0.093750
summer0.093750
neritic zone0.093750
autumn0.093750
adult organism0.062500
age 90 weeks0.062500
shinisaurus crocodilurus0.062500
crocodile lizard0.062500
commonwealth of virginia0.062500
junco hyemalis0.062500
songbird0.062500
male organism0.031250
LOWER IN female0.031250
LOWER IN female organism0.031250
caecum0.031250
ileum0.031250
LOWER IN caecum0.031250
LOWER IN ileum0.031250
control0.031250
LOWER IN influenza0.031250
influenza0.031250
LOWER IN control0.031250
feces0.031250
LOWER IN pelagic zone0.031250
LOWER IN summer0.031250
LOWER IN neritic zone0.031250
LOWER IN autumn0.031250
LOWER IN feces0.031250
female0.031250
female organism0.031250
LOWER IN male0.031250
LOWER IN male organism0.031250
high body condition index0.031250
LOWER IN low body condition index0.031250
low body condition index0.031250
LOWER IN high body condition index0.031250
Exp. ID User ID Description Date Region Flag Sequences
645amnon high in feces compared to cloaca in state of idaho bird captive gymnogyps californianus california condor 2020-09-03v4No1 / 9
740amnon high in male male organism compared to female female organism in cloaca ecuador galapagos islands alimentary part of gastrointestinal system amblyrhynchus cristatus cloacal swab marine iguana 2021-02-08v4No1 / 10
89amnondominant cloaca, commonwealth of virginia, junco hyemalis, songbird2017-03-08v4No1 / 12
645amnondominant cloaca, state of idaho, bird, captive, gymnogyps californianus, california condor2020-09-03v4No1 / 16
81amnondominant cloaca, anas platyrhynchos, state of california, mallard2017-03-05v4No1 / 17
744amnondominant research facility, cloaca, gallus gallus, male, chicken, cobb broiler chicken, age 35 days2021-02-21v3No1 / 18
795amnondominant research facility, cloaca, gallus gallus, chicken, adult organism, china, age 90 weeks2021-06-08v4No1 / 18
288amnondominant neritic zone, cloaca, gulf of mexico, autumn, green turtle, chelonia mydas2018-01-29v4No1 / 18
795amnoncommon research facility, cloaca, gallus gallus, chicken, adult organism, china, age 90 weeks2021-06-08v4No1 / 19
281amnondominant cloaca, shinisaurus crocodilurus, crocodile lizard, china2018-01-25v4No1 / 20
740amnondominant cloaca, ecuador, galapagos islands, alimentary part of gastrointestinal system, amblyrhynchus cristatus, cloacal swab, marine iguana2021-02-08v4No1 / 20
740amnon high in high body condition index compared to low body condition index in cloaca ecuador galapagos islands alimentary part of gastrointestinal system amblyrhynchus cristatus cloacal swab marine iguana 2021-02-08v4No1 / 21
288amnondominant pelagic zone, cloaca, gulf of mexico, summer, green turtle, chelonia mydas2018-01-29v4No1 / 24
740amnon high in low body condition index compared to high body condition index in cloaca ecuador galapagos islands alimentary part of gastrointestinal system amblyrhynchus cristatus cloacal swab marine iguana 2021-02-08v4No1 / 25
81amnoncommon cloaca, anas platyrhynchos, state of california, mallard2017-03-05v4No1 / 30
740amnon high in female female organism compared to male male organism in cloaca ecuador galapagos islands alimentary part of gastrointestinal system amblyrhynchus cristatus cloacal swab marine iguana 2021-02-08v4No1 / 31
81amnonhigh in influenza A positive mallards compared to healthy mallards ( high in influenza compared to control in cloaca anas platyrhynchos state of california mallard )2017-03-05v4No1 / 37
288amnon high in pelagic zone summer compared to neritic zone autumn in cloaca gulf of mexico green turtle chelonia mydas 2018-01-29v4No1 / 44
744amnon high in ileum compared to cloaca in research facility gallus gallus male chicken cobb broiler chicken age 35 days 2021-02-21v3No1 / 47
89amnoncommon cloaca, commonwealth of virginia, junco hyemalis, songbird2017-03-08v4No1 / 48
288amnon high in neritic zone autumn compared to pelagic zone summer in cloaca gulf of mexico green turtle chelonia mydas 2018-01-29v4No1 / 54
281amnoncommon cloaca, shinisaurus crocodilurus, crocodile lizard, china2018-01-25v4No1 / 59
744amnon high in cloaca compared to caecum in research facility gallus gallus male chicken cobb broiler chicken age 35 days 2021-02-21v3No1 / 70
645amnon high in cloaca compared to feces in state of idaho bird captive gymnogyps californianus california condor 2020-09-03v4No1 / 71
645amnoncommon cloaca, state of idaho, bird, captive, gymnogyps californianus, california condor2020-09-03v4No1 / 99
740amnoncommon cloaca, ecuador, galapagos islands, alimentary part of gastrointestinal system, amblyrhynchus cristatus, cloacal swab, marine iguana2021-02-08v4No1 / 110
744amnoncommon research facility, cloaca, gallus gallus, male, chicken, cobb broiler chicken, age 35 days2021-02-21v3No1 / 114
81amnonhigh in healthy mallards compared to influenza A positive mallars ( high in control compared to influenza in cloaca anas platyrhynchos state of california mallard )2017-03-05v4No1 / 131
288amnoncommon neritic zone, cloaca, gulf of mexico, autumn, green turtle, chelonia mydas2018-01-29v4No1 / 132
288amnoncommon pelagic zone, cloaca, gulf of mexico, summer, green turtle, chelonia mydas2018-01-29v4No1 / 135
744amnon high in caecum compared to cloaca in research facility gallus gallus male chicken cobb broiler chicken age 35 days 2021-02-21v3No1 / 187
744amnon high in cloaca compared to ileum in research facility gallus gallus male chicken cobb broiler chicken age 35 days 2021-02-21v3No1 / 265

Problems / suggestions? Please email info AT dbbact DOT org