Summary for ontology term: cobb broiler chicken

Number of annotations with term: 12

Top positive-associated sequence

Taxonomy Sequence Recall

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGAGGAAGAAGGTTTTCGGATTGTAAACTCCTGTCGTTGGGGACGATTATGACGGTACCCAACAAGAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTA0.727273
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGAGGAAGAAGGTTTTCGGATTGTAAACTCCTGTCGTTAGGGACGAATCAAGACGGTACCTAACAAGAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGT0.666667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGAGGAAGAAGGTTTTCGGATTGTAAACTCCTGTCGTTGGGGACGAATCATGACGGTACCTAACAAGAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGT0.666667
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__ErysipelotrichaceaeTAGGGAATTTTCGTCAATGGGGGGAACCCTGAACGAGCAATGCCGCGTGAGCGAAGAAGGTCTTCGGATCGTAAAGCTCTGTTGTAAGAGAAAAACGAGTGCCATAGGGAATGATGGCGCAGTGATGGTATCTTACCAGAAAGCCACGGC0.526316
d__BacteriaTGGGGGATATTGCACAATGGGCGAAAGCCTGATGCAGCAACGCCGCGTGAGGGAAGACGGCCTTCGGGTTGTAAACCTCTGTTCTAAGTGACGAAGAAGTGACGGTAGCTTAGGAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG0.526316
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGGATATTGCGCAATGGGGGAAACCCTGACGCAGCAACGCCGCGTGAAGGACGAAGGTTTTCGGATTGTAAACTTCTTTTGTCAGGGACGAAGAAATGACGGTACCTGACGAATAAGCTCCGGCTAACTACGTGCCAGCAGCCGCGG0.526316
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTGGGGAATATTGCACAATGGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGCGAAGAAGTATCTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAGAATGACGGTACCTGACTAAGAAGCTCCGGCTAAATACGTGCCAGCAGCCGCGG0.526316
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__ErysipelotrichaceaeTAGGGAATTTTCGTCAATGGGGGGAACCCTGAACGAGCAATGCCGCGTGAGCGAAGAAGGTCTTCGGATCGTAAAGCTCTGTTGTAAGAGAAAAACGGTCATCATAGGGAATGATGATGAAGTGATGGTATCTTACCAGAAAGCCACGGC0.526316
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAAGGAAGAAGGTTTTCGGATCGTAAACTTCTATCAATAGGGACGAAACAAATGACGGTACCTAAATAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG0.526316
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__BlautiaTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAAGGAAGAAGTATCTCGGTATGTAAACTTCTATCAGCAGGGAAGAAAGTGACGGTACCTGACTAAGAAGCCCCGGCTAATTACGTGCCAGCAGCCGCGGTA0.521739

Annotations:

common ontology terms
term enrichment score
TermScore
cobb broiler chicken0.666667
age 35 days0.500000
cloaca0.166667
LOWER IN cloaca0.133333
chicken0.105263
gallus gallus0.100000
ileum0.095238
LOWER IN ileum0.083333
caecum0.044444
male0.044444
LOWER IN caecum0.041667
research facility0.012270
Fraction of dbbact annotations with this term covered by the query
TermScore
cobb broiler chicken0.500000
age 35 days0.333333
cloaca0.111111
LOWER IN cloaca0.111111
chicken0.055556
ileum0.055556
LOWER IN ileum0.055556
gallus gallus0.052632
caecum0.023810
LOWER IN caecum0.023810
male0.022727
research facility0.006173
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
age 35 days1.000000
cobb broiler chicken1.000000
male1.000000
gallus gallus1.000000
chicken1.000000
caecum0.333333
ileum0.333333
cloaca0.333333
LOWER IN caecum0.166667
LOWER IN ileum0.166667
LOWER IN cloaca0.166667
Number of experiments associating the term to the sequence
TermScore
caecum1.000000
research facility1.000000
age 35 days1.000000
cobb broiler chicken1.000000
male1.000000
gallus gallus1.000000
chicken1.000000
ileum1.000000
cloaca1.000000
LOWER IN caecum1.000000
LOWER IN ileum1.000000
LOWER IN cloaca1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
744amnondominant ileum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 9approvedNo
744amnondominant cloaca, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 18approvedNo
744amnondominant caecum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 21approvedNo
744amnoncommon ileum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 38approvedNo
744amnon high in ileum compared to cloaca in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 47approvedNo
744amnon high in cloaca compared to caecum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 70approvedNo
744amnoncommon cloaca, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 114approvedNo
744amnon high in ileum compared to caecum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 121approvedNo
744amnoncommon caecum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v31 / 141approvedNo
744amnon high in caecum compared to cloaca in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 187approvedNo
744amnon high in cloaca compared to ileum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 265approvedNo
744amnon high in caecum compared to ileum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v31 / 286approvedNo

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