Summary for ontology term: commonwealth of pennsylvania

Number of annotations with term: 40

Annotations:

common ontology terms
term enrichment score
TermScore
commonwealth of pennsylvania0.941176
acute respiratory failure0.230769
macaca fascicularis0.230769
cynomolgus macaque0.230769
respiratory failure0.206897
adult organism0.153846
early pregnancy0.130435
late pregnancy0.130435
endotracheal aspirate0.130435
oropharyngeal swab0.130435
cheek pouch0.130435
inflammatory bowel disease0.130435
tracheal aspirate0.122449
hospital0.120000
pregnancy0.117647
female organism0.117647
trachea0.115385
oropharynx0.115385
oral wash0.098361
bronchoalveolar lavage0.098361
sus scrofa0.095238
pig0.095238
mealworm0.090909
tenebrio molitor0.090909
pet store0.090909
skin of body0.090909
middle nasal meatus0.090909
nose0.090909
ulcerative colitis0.089552
juvenile stage0.086957
rabbit0.086957
umbilicus0.086957
nasal cavity mucosa0.086957
lung0.085714
captive0.084507
crohn's disease0.078947
oryctolagus cuniculus0.074074
oral cavity0.073171
sheep0.066667
cow0.064516
nasal cavity0.064516
united states of america0.064257
ovis aries0.062500
bos taurus0.054054
dog0.047619
LOWER IN late pregnancy0.047619
LOWER IN early pregnancy0.047619
LOWER IN trachea0.047619
LOWER IN endotracheal aspirate0.047619
LOWER IN tracheal aspirate0.047619
LOWER IN oropharyngeal swab0.047619
LOWER IN multiple pregnancies0.047619
first pregnancy0.047619
LOWER IN first pregnancy0.047619
multiple pregnancies0.047619
LOWER IN cheek pouch0.047619
LOWER IN bronchoalveolar lavage0.047619
LOWER IN lung0.047619
LOWER IN inflammatory bowel disease0.047619
LOWER IN oropharynx0.046512
LOWER IN oral wash0.045455
LOWER IN oral cavity0.045455
wild0.045455
canis lupus familiaris0.043478
LOWER IN ulcerative colitis0.041667
digestive system0.041667
child0.040541
research facility0.039867
LOWER IN crohn's disease0.039216
LOWER IN child0.038462
skin0.037736
farm0.036364
LOWER IN saliva0.035714
saliva0.035503
adult0.034091
homo sapiens0.029520
feces0.025784
control0.010791
LOWER IN control0.009524
Fraction of dbbact annotations with this term covered by the query
TermScore
commonwealth of pennsylvania0.888889
mealworm0.500000
tenebrio molitor0.500000
pet store0.500000
LOWER IN late pregnancy0.500000
early pregnancy0.500000
LOWER IN early pregnancy0.500000
late pregnancy0.500000
endotracheal aspirate0.500000
acute respiratory failure0.500000
oropharyngeal swab0.500000
LOWER IN trachea0.500000
LOWER IN endotracheal aspirate0.500000
LOWER IN tracheal aspirate0.500000
LOWER IN oropharyngeal swab0.500000
LOWER IN multiple pregnancies0.500000
first pregnancy0.500000
LOWER IN first pregnancy0.500000
multiple pregnancies0.500000
cheek pouch0.500000
macaca fascicularis0.500000
cynomolgus macaque0.500000
LOWER IN cheek pouch0.500000
LOWER IN bronchoalveolar lavage0.500000
LOWER IN lung0.500000
skin of body0.500000
middle nasal meatus0.500000
nose0.500000
inflammatory bowel disease0.500000
LOWER IN inflammatory bowel disease0.500000
juvenile stage0.333333
rabbit0.333333
tracheal aspirate0.333333
respiratory failure0.333333
LOWER IN oropharynx0.333333
umbilicus0.333333
nasal cavity mucosa0.333333
trachea0.250000
oropharynx0.250000
LOWER IN oral wash0.250000
LOWER IN oral cavity0.250000
oryctolagus cuniculus0.142857
oral wash0.142857
bronchoalveolar lavage0.142857
adult organism0.125000
LOWER IN ulcerative colitis0.125000
ulcerative colitis0.111111
sheep0.100000
hospital0.100000
lung0.100000
cow0.090909
nasal cavity0.090909
LOWER IN crohn's disease0.090909
ovis aries0.083333
pregnancy0.083333
female organism0.083333
crohn's disease0.083333
LOWER IN child0.083333
oral cavity0.071429
sus scrofa0.062500
pig0.062500
LOWER IN saliva0.062500
bos taurus0.058824
captive0.058824
dog0.045455
wild0.041667
canis lupus familiaris0.038462
digestive system0.035714
united states of america0.033195
skin0.030303
farm0.028571
child0.027778
saliva0.023256
research facility0.020979
adult0.018293
homo sapiens0.015326
feces0.013201
LOWER IN control0.005882
control0.005814
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
commonwealth of pennsylvania1.000000
feces0.550000
research facility0.400000
homo sapiens0.400000
adult0.250000
pregnancy0.200000
adult organism0.200000
female organism0.200000
sus scrofa0.200000
pig0.200000
hospital0.150000
respiratory failure0.150000
acute respiratory failure0.150000
captive0.150000
macaca fascicularis0.150000
cynomolgus macaque0.150000
early pregnancy0.075000
late pregnancy0.075000
trachea0.075000
tracheal aspirate0.075000
endotracheal aspirate0.075000
oropharynx0.075000
oropharyngeal swab0.075000
cheek pouch0.075000
oral cavity0.075000
saliva0.075000
oral wash0.075000
bronchoalveolar lavage0.075000
lung0.075000
child0.075000
ulcerative colitis0.075000
inflammatory bowel disease0.075000
crohn's disease0.075000
control0.075000
canis lupus familiaris0.050000
dog0.050000
juvenile stage0.050000
bos taurus0.050000
cow0.050000
farm0.050000
digestive system0.050000
mealworm0.050000
tenebrio molitor0.050000
pet store0.050000
oryctolagus cuniculus0.050000
rabbit0.050000
wild0.050000
sheep0.050000
ovis aries0.050000
skin of body0.050000
skin0.050000
umbilicus0.050000
middle nasal meatus0.050000
nasal cavity0.050000
nasal cavity mucosa0.050000
nose0.050000
LOWER IN late pregnancy0.025000
LOWER IN early pregnancy0.025000
LOWER IN trachea0.025000
LOWER IN endotracheal aspirate0.025000
LOWER IN tracheal aspirate0.025000
LOWER IN oropharynx0.025000
LOWER IN oropharyngeal swab0.025000
LOWER IN multiple pregnancies0.025000
first pregnancy0.025000
LOWER IN first pregnancy0.025000
multiple pregnancies0.025000
LOWER IN saliva0.025000
LOWER IN oral wash0.025000
LOWER IN cheek pouch0.025000
LOWER IN oral cavity0.025000
LOWER IN bronchoalveolar lavage0.025000
LOWER IN lung0.025000
LOWER IN control0.025000
LOWER IN child0.025000
LOWER IN ulcerative colitis0.025000
LOWER IN inflammatory bowel disease0.025000
LOWER IN crohn's disease0.025000
Exp. ID User ID Description Date Region Flag Sequences
592amnondominant united states of america, feces, commonwealth of pennsylvania, wild, sheep, ovis aries2020-02-18v1No1 / 2
592amnondominant feces, united states of america, bos taurus, cow, farm, commonwealth of pennsylvania2020-02-18v1No1 / 6
592amnondominant united states of america, feces, commonwealth of pennsylvania, research facility, oryctolagus cuniculus, rabbit2020-02-18v1No1 / 8
817amnondominant bronchoalveolar lavage, lung, united states of america, commonwealth of pennsylvania, captive, research facility, macaca fascicularis, cynomolgus macaque2021-07-08v4No1 / 12
684amnondominant middle nasal meatus, nasal cavity, nasal cavity mucosa, nose, commonwealth of pennsylvania, united states of america, adult, homo sapiens2028-03-05v1No1 / 12
636amnoncommon hospital, commonwealth of pennsylvania, united states of america, trachea, tracheal aspirate, endotracheal aspirate, respiratory failure, acute respiratory failure, adult, homo sapiens2020-08-08v4No1 / 13
684amnoncommon middle nasal meatus, nasal cavity, nasal cavity mucosa, nose, commonwealth of pennsylvania, united states of america, adult, homo sapiens2028-03-05v1No1 / 14
816amnondominant late pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 16
395amnonhigher in kids with ibd compared to healthy donors ( high in child ulcerative colitis inflammatory bowel disease crohn's disease compared to control in homo sapiens feces united states of america commonwealth of pennsylvania )2018-11-13v4No1 / 16
816amnondominant early pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 17
636amnoncommon oropharynx, oropharyngeal swab, hospital, commonwealth of pennsylvania, united states of america, respiratory failure, acute respiratory failure, adult, homo sapiens2020-08-08v4No1 / 17
636amnon high in tracheal aspirate endotracheal aspirate trachea compared to oropharynx oropharyngeal swab in hospital commonwealth of pennsylvania united states of america respiratory failure acute respiratory failure adult homo sapiens 2020-08-08v4No1 / 18
817amnondominant united states of america, cheek pouch, oral cavity, saliva, oral wash, commonwealth of pennsylvania, captive, research facility, macaca fascicularis, cynomolgus macaque2021-07-07v4No1 / 18
623amnoncommon skin of body, skin, homo sapiens, umbilicus, united states of america, adult, commonwealth of pennsylvania2020-05-10v3No1 / 18
573amnondominant feces, canis lupus familiaris, dog, united states of america, commonwealth of pennsylvania, juvenile stage2019-12-22v4No1 / 19
592amnondominant digestive system, mealworm, tenebrio molitor, commonwealth of pennsylvania, pet store, united states of america2020-02-18v1No1 / 20
395amnondominant homo sapiens, feces, united states of america, commonwealth of pennsylvania, child, inflammatory bowel disease, crohn's disease, ulcerative colitis2018-11-14v4No1 / 22
636amnondominant hospital, commonwealth of pennsylvania, united states of america, trachea, tracheal aspirate, endotracheal aspirate, respiratory failure, acute respiratory failure, adult, homo sapiens2020-08-08v4No1 / 23
636amnondominant oropharynx, oropharyngeal swab, hospital, commonwealth of pennsylvania, united states of america, respiratory failure, acute respiratory failure, adult, homo sapiens2020-08-08v4No1 / 23
623amnondominant skin of body, skin, homo sapiens, umbilicus, united states of america, adult, commonwealth of pennsylvania2020-05-10v3No1 / 23
395amnondominant homo sapiens, feces, united states of america, commonwealth of pennsylvania, control2018-11-14v4No1 / 24
395amnoncommon homo sapiens, feces, united states of america, commonwealth of pennsylvania, child, ulcerative colitis, inflammatory bowel disease, crohn's disease2018-11-14v4No1 / 25
817amnoncommon bronchoalveolar lavage, lung, united states of america, commonwealth of pennsylvania, captive, research facility, macaca fascicularis, cynomolgus macaque2021-07-08v4No1 / 28
817amnon high in bronchoalveolar lavage lung compared to saliva oral wash cheek pouch oral cavity in united states of america commonwealth of pennsylvania captive research facility macaca fascicularis cynomolgus macaque 2021-07-08v4No1 / 29
573amnoncommon feces, canis lupus familiaris, dog, united states of america, commonwealth of pennsylvania, juvenile stage2019-12-22v4No1 / 30
817amnon high in oral cavity cheek pouch oral wash saliva compared to bronchoalveolar lavage lung in united states of america commonwealth of pennsylvania captive research facility macaca fascicularis cynomolgus macaque 2021-07-08v4No1 / 56
817amnoncommon united states of america, cheek pouch, oral cavity, saliva, oral wash, commonwealth of pennsylvania, captive, research facility, macaca fascicularis, cynomolgus macaque2021-07-07v4No1 / 72
395amnoncommon homo sapiens, feces, united states of america, commonwealth of pennsylvania, control2018-11-14v4No1 / 75
816amnon high in early pregnancy compared to late pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig 2021-07-04v4No1 / 83
592amnoncommon digestive system, mealworm, tenebrio molitor, commonwealth of pennsylvania, pet store, united states of america2020-02-18v1No1 / 84
395amnonlower in kids with ibd compared to healthy donors ( high in control compared to child ulcerative colitis inflammatory bowel disease crohn's disease in homo sapiens feces united states of america commonwealth of pennsylvania )2018-11-13v4No1 / 107
636amnon high in oropharynx oropharyngeal swab compared to trachea endotracheal aspirate tracheal aspirate in hospital commonwealth of pennsylvania united states of america respiratory failure acute respiratory failure adult homo sapiens 2020-08-08v4No1 / 122
592amnoncommon united states of america, feces, commonwealth of pennsylvania, research facility, oryctolagus cuniculus, rabbit2020-02-18v1No1 / 196
816amnon high in late pregnancy compared to early pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig 2021-07-04v4No1 / 312
816amnoncommon early pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 313
816amnoncommon late pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 340
816amnonhigher in sows in first pregnancy compared to later pregnancies ( high in first pregnancy compared to multiple pregnancies in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig )2021-07-04v4No1 / 374
592amnoncommon feces, united states of america, bos taurus, cow, farm, commonwealth of pennsylvania2020-02-18v1No1 / 633
816amnonlower in sows in first pregnancy compared to later pregnancies ( high in multiple pregnancies compared to first pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig )2021-07-04v4No1 / 780
592amnoncommon united states of america, feces, commonwealth of pennsylvania, wild, sheep, ovis aries2020-02-18v1No1 / 828

Problems / suggestions? Please email info AT dbbact DOT org