Summary for ontology term: cow

Number of annotations with term: 21

Annotations:

common ontology terms
term enrichment score
TermScore
cow1.000000
bos taurus0.714286
state of georgia0.615385
30-60 days0.322581
angus steer0.275862
state of nebraska0.242424
post-weaning0.242424
late timepoints0.178571
nasopharynx0.177778
rumen0.131148
canada0.115942
farm0.088398
corn diet0.086957
40mdgs diet0.086957
LOWER IN 27cds diet0.086957
LOWER IN 55cs diet0.086957
27cds diet0.086957
55cs diet0.086957
LOWER IN corn diet0.086957
LOWER IN 40mdgs diet0.086957
0-2 days0.086957
LOWER IN 30-60 days0.086957
LOWER IN 0-2 days0.086957
unshaded0.086957
sunlight0.086957
LOWER IN shaded0.086957
shaded0.086957
LOWER IN unshaded0.086957
LOWER IN sunlight0.086957
LOWER IN days 14-280.086957
LOWER IN days 1-20.086957
days 14-280.086957
days 1-20.083333
LOWER IN early timepoints0.071429
mitochondrion0.071429
early timepoints0.066667
LOWER IN late timepoints0.066667
LOWER IN antibiotic0.066667
antibiotic0.064516
diet0.059701
united states of america0.033531
feces0.020888
LOWER IN control0.015038
control0.014925
Fraction of dbbact annotations with this term covered by the query
TermScore
cow1.000000
state of georgia0.666667
bos taurus0.555556
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
0-2 days0.500000
LOWER IN 30-60 days0.500000
30-60 days0.500000
LOWER IN 0-2 days0.500000
unshaded0.500000
sunlight0.500000
LOWER IN shaded0.500000
shaded0.500000
LOWER IN unshaded0.500000
LOWER IN sunlight0.500000
angus steer0.500000
LOWER IN days 14-280.500000
LOWER IN days 1-20.500000
days 14-280.500000
state of nebraska0.333333
post-weaning0.333333
days 1-20.333333
nasopharynx0.166667
late timepoints0.142857
LOWER IN early timepoints0.142857
mitochondrion0.142857
early timepoints0.111111
LOWER IN late timepoints0.111111
LOWER IN antibiotic0.111111
rumen0.100000
antibiotic0.100000
canada0.083333
farm0.050000
diet0.043478
united states of america0.017143
feces0.010638
LOWER IN control0.008929
control0.008850
Fraction of annotations for the query sequences containing the term
TermScore
bos taurus1.000000
cow1.000000
united states of america0.761905
feces0.571429
state of georgia0.571429
farm0.380952
late timepoints0.238095
30-60 days0.238095
rumen0.190476
state of nebraska0.190476
angus steer0.190476
post-weaning0.190476
nasopharynx0.190476
canada0.190476
diet0.095238
corn diet0.047619
40mdgs diet0.047619
LOWER IN 27cds diet0.047619
LOWER IN 55cs diet0.047619
27cds diet0.047619
55cs diet0.047619
LOWER IN corn diet0.047619
LOWER IN 40mdgs diet0.047619
early timepoints0.047619
0-2 days0.047619
LOWER IN late timepoints0.047619
LOWER IN 30-60 days0.047619
LOWER IN early timepoints0.047619
LOWER IN 0-2 days0.047619
unshaded0.047619
sunlight0.047619
LOWER IN shaded0.047619
shaded0.047619
LOWER IN unshaded0.047619
LOWER IN sunlight0.047619
LOWER IN days 14-280.047619
days 1-20.047619
LOWER IN days 1-20.047619
days 14-280.047619
control0.047619
LOWER IN antibiotic0.047619
antibiotic0.047619
LOWER IN control0.047619
mitochondrion0.047619
Exp. ID User ID Description Date Sequences
525amnoncow mitochondrial dna (other cow, mitochondrion, bos taurus)2019-07-101 / 1
327amnonhigher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )2018-04-301 / 4
518amnonhighfreq angus steer, post-weaning, state of georgia, united states of america, feces, cow, bos taurus2019-06-111 / 8
466amnonhighfreq feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-141 / 9
327amnonhighfreq bos taurus, cow, nasopharynx, canada2018-04-301 / 15
466amnonhigh freq. in cow feces left in field for 30-60 days (highfreq feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-141 / 18
261amnonhighfreq bos taurus, cow, rumen, united states of america, state of nebraska2017-12-101 / 19
327amnonlower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )2018-04-301 / 45
327amnoncommon bos taurus, cow, nasopharynx, canada2018-04-301 / 50
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-101 / 83
466amnonlower in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in unshaded sunlight compared to shaded in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-141 / 112
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-101 / 113
466amnoncommon in cow feces left in field for 30-60 days (common feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-141 / 221
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-101 / 266
518amnonhigher in beginning of experiment ( high in days 1-2 compared to days 14-28 in angus steer post-weaning state of georgia united states of america feces cow bos taurus )2019-06-111 / 325
466amnonhigher in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in shaded compared to unshaded sunlight in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-141 / 432
518amnoncommon angus steer, post-weaning, state of georgia, united states of america, feces, cow, bos taurus2019-06-111 / 498
518amnonhigher in end of experiment (older steers) ( high in days 14-28 compared to days 1-2 in angus steer post-weaning state of georgia united states of america feces cow bos taurus )2019-06-111 / 609
466amnonhigher in cow feces left in field for 30-60 days compared to initial feces ( high in late timepoints 30-60 days compared to early timepoints 0-2 days in feces bos taurus cow farm united states of america state of georgia )2019-01-141 / 662
466amnoncommon feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-141 / 783
466amnonlower in cow feces left in field for 30-60 days compared to initial feces ( high in early timepoints 0-2 days compared to late timepoints 30-60 days in feces bos taurus cow farm united states of america state of georgia )2019-01-141 / 1329

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