Summary for ontology term: cow

Number of annotations with term: 23

Annotations:

common ontology terms
term enrichment score
TermScore
cow0.923077
bos taurus0.705882
state of georgia0.585366
canada0.413793
30-60 days0.303030
angus steer0.258065
state of nebraska0.228571
post-weaning0.228571
late timepoints0.172414
nasopharynx0.145455
farm0.144928
rumen0.112676
corn diet0.080000
40mdgs diet0.080000
LOWER IN 27cds diet0.080000
LOWER IN 55cs diet0.080000
27cds diet0.080000
55cs diet0.080000
LOWER IN corn diet0.080000
LOWER IN 40mdgs diet0.080000
0-2 days0.080000
LOWER IN 30-60 days0.080000
LOWER IN 0-2 days0.080000
unshaded0.080000
sunlight0.080000
LOWER IN shaded0.080000
shaded0.080000
LOWER IN unshaded0.080000
LOWER IN sunlight0.080000
LOWER IN days 14-280.080000
days 14-280.080000
LOWER IN days 1-20.080000
days 1-20.076923
LOWER IN early timepoints0.066667
early timepoints0.062500
LOWER IN late timepoints0.062500
LOWER IN antibiotic0.062500
antibiotic0.060606
mitochondrion0.060606
diet0.056338
skin0.054795
united states of america0.031362
feces0.018794
LOWER IN control0.013245
control0.013158
Fraction of dbbact annotations with this term covered by the query
TermScore
canada1.000000
cow0.857143
state of georgia0.666667
bos taurus0.545455
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
0-2 days0.500000
LOWER IN 30-60 days0.500000
30-60 days0.500000
LOWER IN 0-2 days0.500000
unshaded0.500000
sunlight0.500000
LOWER IN shaded0.500000
shaded0.500000
LOWER IN unshaded0.500000
LOWER IN sunlight0.500000
angus steer0.500000
LOWER IN days 14-280.500000
days 14-280.500000
LOWER IN days 1-20.500000
state of nebraska0.333333
post-weaning0.333333
days 1-20.333333
late timepoints0.142857
LOWER IN early timepoints0.142857
nasopharynx0.125000
early timepoints0.111111
LOWER IN late timepoints0.111111
LOWER IN antibiotic0.111111
antibiotic0.100000
mitochondrion0.100000
farm0.086957
rumen0.083333
diet0.041667
skin0.040000
united states of america0.016043
feces0.009569
LOWER IN control0.007812
control0.007752
Fraction of annotations for the query sequences containing the term
TermScore
bos taurus1.000000
cow1.000000
united states of america0.695652
feces0.521739
state of georgia0.521739
farm0.434783
canada0.260870
late timepoints0.217391
30-60 days0.217391
rumen0.173913
state of nebraska0.173913
post-weaning0.173913
angus steer0.173913
nasopharynx0.173913
diet0.086957
skin0.086957
corn diet0.043478
40mdgs diet0.043478
LOWER IN 27cds diet0.043478
LOWER IN 55cs diet0.043478
27cds diet0.043478
55cs diet0.043478
LOWER IN corn diet0.043478
LOWER IN 40mdgs diet0.043478
early timepoints0.043478
0-2 days0.043478
LOWER IN late timepoints0.043478
LOWER IN 30-60 days0.043478
LOWER IN early timepoints0.043478
LOWER IN 0-2 days0.043478
unshaded0.043478
sunlight0.043478
LOWER IN shaded0.043478
shaded0.043478
LOWER IN unshaded0.043478
LOWER IN sunlight0.043478
days 1-20.043478
LOWER IN days 14-280.043478
days 14-280.043478
LOWER IN days 1-20.043478
control0.043478
LOWER IN antibiotic0.043478
antibiotic0.043478
LOWER IN control0.043478
mitochondrion0.043478
Exp. ID User ID Description Date Region Flag Sequences
525amnoncow mitochondrial dna (other bos taurus, mitochondrion, cow)2019-07-10v4No1 / 1
327amnonhigher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )2018-04-30v4No1 / 4
518amnonhighfreq bos taurus, cow, feces, united states of america, state of georgia, post-weaning, angus steer2019-06-11v4No1 / 8
466amnonhighfreq feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-14v4No1 / 9
565amnonhighfreq cow, bos taurus, farm, canada, skin2019-11-21v3No1 / 12
327amnonhighfreq bos taurus, cow, nasopharynx, canada2018-04-30v4No1 / 15
466amnonhigh freq. in cow feces left in field for 30-60 days (highfreq feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-14v4No1 / 18
261amnonhighfreq bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 19
327amnonlower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )2018-04-30v4No1 / 45
327amnoncommon bos taurus, cow, nasopharynx, canada2018-04-30v4No1 / 50
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 83
466amnonlower in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in unshaded sunlight compared to shaded in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-14v4No1 / 112
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 113
466amnoncommon in cow feces left in field for 30-60 days (common feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-14v4No1 / 221
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 266
565amnoncommon cow, bos taurus, farm, canada, skin2019-11-21v3No1 / 318
518amnonhigher in beginning of experiment ( high in days 1-2 compared to days 14-28 in bos taurus cow feces united states of america state of georgia post-weaning angus steer )2019-06-11v4No1 / 325
466amnonhigher in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in shaded compared to unshaded sunlight in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-14v4No1 / 432
518amnoncommon bos taurus, cow, feces, united states of america, state of georgia, post-weaning, angus steer2019-06-11v4No1 / 498
518amnonhigher in end of experiment (older steers) ( high in days 14-28 compared to days 1-2 in bos taurus cow feces united states of america state of georgia post-weaning angus steer )2019-06-11v4No1 / 609
466amnonhigher in cow feces left in field for 30-60 days compared to initial feces ( high in late timepoints 30-60 days compared to early timepoints 0-2 days in feces bos taurus cow farm united states of america state of georgia )2019-01-14v4No1 / 662
466amnoncommon feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-14v4No1 / 783
466amnonlower in cow feces left in field for 30-60 days compared to initial feces ( high in early timepoints 0-2 days compared to late timepoints 30-60 days in feces bos taurus cow farm united states of america state of georgia )2019-01-14v4No1 / 1329

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