Summary for ontology term: cow

Number of annotations with term: 25

Annotations:

common ontology terms
term enrichment score
TermScore
cow0.933333
bos taurus0.736842
state of georgia0.489796
canada0.352941
30-60 days0.285714
angus steer0.242424
state of nebraska0.216216
post-weaning0.216216
farm0.175182
late timepoints0.166667
nasopharynx0.123077
commonwealth of pennsylvania0.114286
rumen0.109589
corn diet0.074074
40mdgs diet0.074074
LOWER IN 27cds diet0.074074
LOWER IN 55cs diet0.074074
27cds diet0.074074
55cs diet0.074074
LOWER IN corn diet0.074074
LOWER IN 40mdgs diet0.074074
0-2 days0.074074
LOWER IN 30-60 days0.074074
LOWER IN 0-2 days0.074074
unshaded0.074074
sunlight0.074074
LOWER IN shaded0.074074
shaded0.074074
LOWER IN unshaded0.074074
LOWER IN sunlight0.074074
LOWER IN days 14-280.074074
days 14-280.074074
LOWER IN days 1-20.074074
days 1-20.071429
LOWER IN early timepoints0.062500
early timepoints0.058824
LOWER IN late timepoints0.058824
LOWER IN antibiotic0.058824
mitochondrion0.057143
antibiotic0.055556
diet0.054795
skin0.050633
united states of america0.038919
feces0.025712
LOWER IN control0.012121
control0.012048
Fraction of dbbact annotations with this term covered by the query
TermScore
cow0.875000
canada0.666667
bos taurus0.583333
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
state of georgia0.500000
0-2 days0.500000
LOWER IN 30-60 days0.500000
30-60 days0.500000
LOWER IN 0-2 days0.500000
unshaded0.500000
sunlight0.500000
LOWER IN shaded0.500000
shaded0.500000
LOWER IN unshaded0.500000
LOWER IN sunlight0.500000
angus steer0.500000
LOWER IN days 14-280.500000
days 14-280.500000
LOWER IN days 1-20.500000
state of nebraska0.333333
post-weaning0.333333
days 1-20.333333
commonwealth of pennsylvania0.200000
late timepoints0.142857
LOWER IN early timepoints0.142857
early timepoints0.111111
LOWER IN late timepoints0.111111
LOWER IN antibiotic0.111111
farm0.107143
nasopharynx0.100000
mitochondrion0.100000
antibiotic0.090909
rumen0.083333
diet0.041667
skin0.037037
united states of america0.020000
feces0.013158
LOWER IN control0.007143
control0.007092
Fraction of annotations for the query sequences containing the term
TermScore
bos taurus1.000000
cow1.000000
united states of america0.720000
feces0.560000
farm0.480000
state of georgia0.480000
canada0.240000
late timepoints0.200000
30-60 days0.200000
rumen0.160000
state of nebraska0.160000
post-weaning0.160000
angus steer0.160000
nasopharynx0.160000
diet0.080000
commonwealth of pennsylvania0.080000
skin0.080000
corn diet0.040000
40mdgs diet0.040000
LOWER IN 27cds diet0.040000
LOWER IN 55cs diet0.040000
27cds diet0.040000
55cs diet0.040000
LOWER IN corn diet0.040000
LOWER IN 40mdgs diet0.040000
early timepoints0.040000
0-2 days0.040000
LOWER IN late timepoints0.040000
LOWER IN 30-60 days0.040000
LOWER IN early timepoints0.040000
LOWER IN 0-2 days0.040000
unshaded0.040000
sunlight0.040000
LOWER IN shaded0.040000
shaded0.040000
LOWER IN unshaded0.040000
LOWER IN sunlight0.040000
days 1-20.040000
LOWER IN days 14-280.040000
days 14-280.040000
LOWER IN days 1-20.040000
control0.040000
LOWER IN antibiotic0.040000
antibiotic0.040000
LOWER IN control0.040000
mitochondrion0.040000
Exp. ID User ID Description Date Region Flag Sequences
525amnoncow mitochondrial dna (other bos taurus, mitochondrion, cow)2019-07-10v4No1 / 1
327amnonhigher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )2018-04-30v4No1 / 4
592amnondominant feces, united states of america, bos taurus, cow, farm, commonwealth of pennsylvania2020-02-18v1No1 / 6
518amnondominant bos taurus, cow, feces, united states of america, state of georgia, post-weaning, angus steer2019-06-11v4No1 / 8
466amnondominant feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-14v4No1 / 9
565amnondominant skin, canada, farm, bos taurus, cow2019-11-21v3No1 / 12
327amnondominant bos taurus, cow, nasopharynx, canada2018-04-30v4No1 / 15
466amnonhigh freq. in cow feces left in field for 30-60 days (dominant feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-14v4No1 / 18
261amnondominant bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 19
327amnonlower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )2018-04-30v4No1 / 45
327amnoncommon bos taurus, cow, nasopharynx, canada2018-04-30v4No1 / 50
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 83
466amnonlower in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in unshaded sunlight compared to shaded in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-14v4No1 / 112
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 113
466amnoncommon in cow feces left in field for 30-60 days (common feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-14v4No1 / 221
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 266
565amnoncommon skin, canada, farm, bos taurus, cow2019-11-21v3No1 / 318
518amnonhigher in beginning of experiment ( high in days 1-2 compared to days 14-28 in bos taurus cow feces united states of america state of georgia post-weaning angus steer )2019-06-11v4No1 / 325
466amnonhigher in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in shaded compared to unshaded sunlight in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-14v4No1 / 432
518amnoncommon bos taurus, cow, feces, united states of america, state of georgia, post-weaning, angus steer2019-06-11v4No1 / 498
518amnonhigher in end of experiment (older steers) ( high in days 14-28 compared to days 1-2 in bos taurus cow feces united states of america state of georgia post-weaning angus steer )2019-06-11v4No1 / 609
592amnoncommon feces, united states of america, bos taurus, cow, farm, commonwealth of pennsylvania2020-02-18v1No1 / 633
466amnonhigher in cow feces left in field for 30-60 days compared to initial feces ( high in late timepoints 30-60 days compared to early timepoints 0-2 days in feces bos taurus cow farm united states of america state of georgia )2019-01-14v4No1 / 662
466amnoncommon feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-14v4No1 / 783
466amnonlower in cow feces left in field for 30-60 days compared to initial feces ( high in early timepoints 0-2 days compared to late timepoints 30-60 days in feces bos taurus cow farm united states of america state of georgia )2019-01-14v4No1 / 1329

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