Summary for ontology term: cow

Number of annotations with term: 16

Annotations:

common ontology terms
term enrichment score
TermScore
cow0.857143
bos taurus0.545455
state of georgia0.500000
30-60 days0.384615
state of nebraska0.285714
nasopharynx0.200000
late timepoints0.196078
rumen0.153846
canada0.142857
farm0.125000
corn diet0.111111
40mdgs diet0.111111
LOWER IN 27cds diet0.111111
LOWER IN 55cs diet0.111111
27cds diet0.111111
55cs diet0.111111
LOWER IN corn diet0.111111
LOWER IN 40mdgs diet0.111111
0-2 days0.111111
LOWER IN 30-60 days0.111111
LOWER IN 0-2 days0.111111
unshaded0.111111
sunlight0.111111
LOWER IN shaded0.111111
shaded0.111111
LOWER IN unshaded0.111111
LOWER IN sunlight0.111111
LOWER IN early timepoints0.086957
early timepoints0.080000
LOWER IN late timepoints0.080000
LOWER IN antibiotic0.080000
antibiotic0.076923
diet0.071429
united states of america0.024440
LOWER IN control0.016807
control0.016529
feces0.011561
Fraction of dbbact annotations with this term covered by the query
TermScore
cow0.750000
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
state of georgia0.500000
0-2 days0.500000
LOWER IN 30-60 days0.500000
30-60 days0.500000
LOWER IN 0-2 days0.500000
unshaded0.500000
sunlight0.500000
LOWER IN shaded0.500000
shaded0.500000
LOWER IN unshaded0.500000
LOWER IN sunlight0.500000
bos taurus0.375000
state of nebraska0.333333
nasopharynx0.166667
late timepoints0.142857
LOWER IN early timepoints0.142857
rumen0.111111
early timepoints0.111111
LOWER IN late timepoints0.111111
LOWER IN antibiotic0.111111
canada0.100000
antibiotic0.100000
farm0.071429
diet0.050000
united states of america0.012422
LOWER IN control0.009709
control0.009524
feces0.005848
Fraction of annotations for the query sequences containing the term
TermScore
bos taurus1.000000
cow1.000000
united states of america0.750000
feces0.500000
farm0.500000
state of georgia0.500000
late timepoints0.312500
30-60 days0.312500
rumen0.250000
state of nebraska0.250000
nasopharynx0.250000
canada0.250000
diet0.125000
corn diet0.062500
40mdgs diet0.062500
LOWER IN 27cds diet0.062500
LOWER IN 55cs diet0.062500
27cds diet0.062500
55cs diet0.062500
LOWER IN corn diet0.062500
LOWER IN 40mdgs diet0.062500
early timepoints0.062500
0-2 days0.062500
LOWER IN late timepoints0.062500
LOWER IN 30-60 days0.062500
LOWER IN early timepoints0.062500
LOWER IN 0-2 days0.062500
unshaded0.062500
sunlight0.062500
LOWER IN shaded0.062500
shaded0.062500
LOWER IN unshaded0.062500
LOWER IN sunlight0.062500
control0.062500
LOWER IN antibiotic0.062500
antibiotic0.062500
LOWER IN control0.062500
Exp. ID User ID Description Date Sequences
327amnonhigher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )2018-04-301 / 4
466amnonhighfreq feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-141 / 9
327amnonhighfreq bos taurus, cow, nasopharynx, canada2018-04-301 / 15
466amnonhigh freq. in cow feces left in field for 30-60 days (highfreq feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-141 / 18
261amnonhighfreq bos taurus, cow, rumen, united states of america, state of nebraska2017-12-101 / 19
327amnonlower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )2018-04-301 / 45
327amnoncommon bos taurus, cow, nasopharynx, canada2018-04-301 / 50
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-101 / 83
466amnonlower in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in unshaded sunlight compared to shaded in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-141 / 112
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-101 / 113
466amnoncommon in cow feces left in field for 30-60 days (common feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-141 / 221
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-101 / 266
466amnonhigher in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in shaded compared to unshaded sunlight in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-141 / 432
466amnonhigher in cow feces left in field for 30-60 days compared to initial feces ( high in late timepoints 30-60 days compared to early timepoints 0-2 days in feces bos taurus cow farm united states of america state of georgia )2019-01-141 / 662
466amnoncommon feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-141 / 783
466amnonlower in cow feces left in field for 30-60 days compared to initial feces ( high in early timepoints 0-2 days compared to late timepoints 30-60 days in feces bos taurus cow farm united states of america state of georgia )2019-01-141 / 1329

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