Summary for ontology term: cow

Number of annotations with term: 27

Annotations:

common ontology terms
term enrichment score
TermScore
cow0.941176
bos taurus0.761905
state of georgia0.421053
canada0.333333
30-60 days0.270270
angus steer0.228571
post-weaning0.205128
state of nebraska0.186047
farm0.167832
late timepoints0.161290
nasopharynx0.119403
commonwealth of pennsylvania0.102564
rumen0.101266
italy0.075472
corn diet0.068966
40mdgs diet0.068966
LOWER IN 27cds diet0.068966
LOWER IN 55cs diet0.068966
27cds diet0.068966
55cs diet0.068966
LOWER IN corn diet0.068966
LOWER IN 40mdgs diet0.068966
0-2 days0.068966
LOWER IN 30-60 days0.068966
LOWER IN 0-2 days0.068966
unshaded0.068966
sunlight0.068966
LOWER IN shaded0.068966
shaded0.068966
LOWER IN unshaded0.068966
LOWER IN sunlight0.068966
LOWER IN days 14-280.068966
days 14-280.068966
LOWER IN days 1-20.068966
days 1-20.066667
LOWER IN early timepoints0.058824
early timepoints0.055556
LOWER IN late timepoints0.055556
diet0.053333
LOWER IN antibiotic0.052632
mitochondrion0.052632
antibiotic0.051282
skin0.047059
united states of america0.036866
feces0.031527
LOWER IN control0.011696
control0.011628
Fraction of dbbact annotations with this term covered by the query
TermScore
cow0.888889
canada0.666667
bos taurus0.615385
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
0-2 days0.500000
LOWER IN 30-60 days0.500000
30-60 days0.500000
LOWER IN 0-2 days0.500000
unshaded0.500000
sunlight0.500000
LOWER IN shaded0.500000
shaded0.500000
LOWER IN unshaded0.500000
LOWER IN sunlight0.500000
angus steer0.500000
LOWER IN days 14-280.500000
days 14-280.500000
LOWER IN days 1-20.500000
state of georgia0.400000
post-weaning0.333333
days 1-20.333333
state of nebraska0.250000
commonwealth of pennsylvania0.166667
late timepoints0.142857
LOWER IN early timepoints0.142857
early timepoints0.111111
LOWER IN late timepoints0.111111
farm0.103448
nasopharynx0.100000
LOWER IN antibiotic0.090909
mitochondrion0.090909
antibiotic0.083333
rumen0.076923
italy0.076923
diet0.041667
skin0.034483
united states of america0.018957
feces0.016194
LOWER IN control0.006944
control0.006897
Fraction of annotations for the query sequences containing the term
TermScore
bos taurus1.000000
cow1.000000
united states of america0.666667
feces0.592593
farm0.444444
state of georgia0.444444
canada0.222222
late timepoints0.185185
30-60 days0.185185
rumen0.148148
state of nebraska0.148148
post-weaning0.148148
angus steer0.148148
nasopharynx0.148148
diet0.074074
commonwealth of pennsylvania0.074074
italy0.074074
skin0.074074
corn diet0.037037
40mdgs diet0.037037
LOWER IN 27cds diet0.037037
LOWER IN 55cs diet0.037037
27cds diet0.037037
55cs diet0.037037
LOWER IN corn diet0.037037
LOWER IN 40mdgs diet0.037037
early timepoints0.037037
0-2 days0.037037
LOWER IN late timepoints0.037037
LOWER IN 30-60 days0.037037
LOWER IN early timepoints0.037037
LOWER IN 0-2 days0.037037
unshaded0.037037
sunlight0.037037
LOWER IN shaded0.037037
shaded0.037037
LOWER IN unshaded0.037037
LOWER IN sunlight0.037037
days 1-20.037037
LOWER IN days 14-280.037037
days 14-280.037037
LOWER IN days 1-20.037037
control0.037037
LOWER IN antibiotic0.037037
antibiotic0.037037
LOWER IN control0.037037
mitochondrion0.037037
Exp. ID User ID Description Date Region Flag Sequences
525amnoncow mitochondrial dna (other bos taurus, mitochondrion, cow)2019-07-10v4No1 / 0
327amnonhigher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in bos taurus cow nasopharynx canada )2018-04-30v4No1 / 3
592amnondominant feces, united states of america, bos taurus, cow, farm, commonwealth of pennsylvania2020-02-18v1No1 / 5
666amnondominant cow, bos taurus, italy, feces2020-09-25v3No1 / 5
518amnondominant bos taurus, cow, feces, united states of america, state of georgia, post-weaning, angus steer2019-06-11v4No1 / 7
466amnondominant feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-14v4No1 / 8
565amnondominant skin, canada, farm, bos taurus, cow2019-11-21v3No1 / 11
327amnondominant bos taurus, cow, nasopharynx, canada2018-04-30v4No1 / 14
466amnonhigh freq. in cow feces left in field for 30-60 days (dominant feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-14v4No1 / 17
261amnondominant bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 18
327amnonlower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in bos taurus cow nasopharynx canada )2018-04-30v4No1 / 44
327amnoncommon bos taurus, cow, nasopharynx, canada2018-04-30v4No1 / 49
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 82
466amnonlower in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in unshaded sunlight compared to shaded in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-14v4No1 / 111
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 112
466amnoncommon in cow feces left in field for 30-60 days (common feces, bos taurus, cow, farm, united states of america, state of georgia, late timepoints, 30-60 days)2019-01-14v4No1 / 220
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 265
565amnoncommon skin, canada, farm, bos taurus, cow2019-11-21v3No1 / 317
518amnonhigher in beginning of experiment ( high in days 1-2 compared to days 14-28 in bos taurus cow feces united states of america state of georgia post-weaning angus steer )2019-06-11v4No1 / 324
466amnonhigher in shaded compared to unshaded samples in cow feces left in field for 30-60 days ( high in shaded compared to unshaded sunlight in feces bos taurus cow farm united states of america state of georgia late timepoints 30-60 days )2019-01-14v4No1 / 431
666amnoncommon cow, bos taurus, italy, feces2020-09-25v3No1 / 482
518amnoncommon bos taurus, cow, feces, united states of america, state of georgia, post-weaning, angus steer2019-06-11v4No1 / 497
518amnonhigher in end of experiment (older steers) ( high in days 14-28 compared to days 1-2 in bos taurus cow feces united states of america state of georgia post-weaning angus steer )2019-06-11v4No1 / 608
592amnoncommon feces, united states of america, bos taurus, cow, farm, commonwealth of pennsylvania2020-02-18v1No1 / 632
466amnonhigher in cow feces left in field for 30-60 days compared to initial feces ( high in late timepoints 30-60 days compared to early timepoints 0-2 days in feces bos taurus cow farm united states of america state of georgia )2019-01-14v4No1 / 661
466amnoncommon feces, bos taurus, cow, farm, united states of america, state of georgia2019-01-14v4No1 / 782
466amnonlower in cow feces left in field for 30-60 days compared to initial feces ( high in early timepoints 0-2 days compared to late timepoints 30-60 days in feces bos taurus cow farm united states of america state of georgia )2019-01-14v4No1 / 1328

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