Summary for ontology term: depth 0-5cm

Number of annotations with term: 7

Top positive-associated sequence

Taxonomy Sequence Recall
d__BacteriaTACGGAGGTGGCAAACGTTGCTCGGAATCACTGGGCTTAAAGGGCGTGTAGGCGGTCTTCCAAGTCGGGTGTGAAAGCCCTCGGCTCAACCGAGGAATTGCACACGATACTGGTCGACTAGAGTGCGGCAGGGGTAAGTGGAACTCCAGG0.125000
d__Bacteria;p__"Proteobacteria"TACGGAGGGGGCTAGCGTTGCTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGTGAATTTAGTCAGGCGTGAAAGCCCCGGGCTTAACCCGGGAACTGCGTTTGATACTGATTTACTAGAATTCGAGAGAGGGTAGCGGAATTTCCAG0.125000
d__BacteriaTACAGAGGGTGCAAACGTTGTTCGGAATTACTGGGCATAAAGCGCACGTAGGCGGTCAGGTAAGTGTGAAGTGAAATCCCACGGCTCACCCGTGGAACTGCTTTGCATACTGCTTGACTAGAGGAAGGTAGGGGAGAGCAGAACTCTTGG0.125000
d__BacteriaTACGGAAGGGGCAAGCGTTGTTCGGAATCATTGGGCGTAAAGGGCGCGTAGGCGGTTTCGTATGTCCGCTGTGAAAGCCCACGGCTCAACCGTGGAAAGTCGGTGGAAACTGCGAAACTTGAGGCTGGGAGGGGCTGGTGGAATTCCCTG0.125000
d__Bacteria;p__"Proteobacteria";c__GammaproteobacteriaTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGCTCAGTCAGTCGGATGTGAAAGCCCCGGGCTCAACCTGGGAATTGCATTCGATACTGCTGAGCTAGAGTATGGAAGAGGGAAGTGGAATTCCGGG0.125000
d__Bacteria;p__"Proteobacteria";c__GammaproteobacteriaTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGCTTGTTAAGTCGGATGTGAAAGCCCCGGGCTCAACCTGGGAACTGCATTCGATACTGGCAAGCTAGAGTATGGGAGAGGGCTGTGGAATTCCACG0.125000
d__BacteriaTACGAAGGGCCCGAGCGTTGCGCGGAATCACTGGGCTTAAAGCGTACGTAGGCGGACAAGCAGGCATCTTGTGAAATCCCTCGGCTCAACCGAGGAATTGCTTGGTGAACCGCTTGTCTTGAGGCGAGTAGGGGCTGTCGGAACGATAGG0.125000
d__BacteriaTACGGGGGGGGCAAGCGTTGTTCGGATTTACTGGGCGTAAAGGGCTCGTAGGCGGCCACTTAAGTCGGTTGTGAAATCCCTCGGCTCAACCGGGGAACTGCGACCGAAACTGGGTGGCTTGAAGCCGGGAGAGGGATGCGGAATTCCAGG0.125000
d__Bacteria;p__"Proteobacteria"TACGGAGGGTGCAAGCGTTGTTCGGAATCATTGGGCGTAAAGCGCGCGTAGGCGGCTTGGTAAGTCGGATGTGAAATCCCGGGGCCCAACCCCGGAACTGCATTCGATACTGCCTGGCTAGAGTCCCGGAGAGGAAGGCAGAATTCCCGG0.125000
d__Bacteria;p__"Proteobacteria"TACGGAGGGTGCAAGCGTTGTTCGGAATTATTGGGCGTAAAGCGGGTGTAGGCGGCTTTGCAAGTCAGATGTGAAATCCCTGGGCCCAACCCAGGAACTGCATTTGATACTGCATCGCTAGAGTCCCGGAGAGGATGGCGGAATTCCAGG0.125000

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__BacteriaGACGGAGAGCGCGGGCGTTATTCGTTTTGATTGGGTGTAAAGGGTACGTAGGTAGTTTTTGATAATTTTTAACTAAAAACGCAGAGTGTTCCTATGCGCTAGTTTTTTTAAAGATCAAACTAGTACTGATTAGAGGTTGGGGCAATTTCC0.615385
d__BacteriaCACGGAGAGCACGGGCGTTATTCGTTTTGATTGGGTGTAAAGGGTACGTAGGCTGCTGTTGTTAATTTTTAACCGAAATCGCGGAGTGTTCCTATGCGCTGGTTTTTTAGAAGATATAGCTGGTGTTAAAGATAGGTTGGGGCAATTTCC0.500000
d__Bacteria;p__"Proteobacteria";c__Betaproteobacteria;o__Burkholderiales;f__OxalobacteraceaeTACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGTTTGTCGTGAAAGCCCCGGGCTCAACCTGGGAATTGCGATGAAGACTGCAAGGCTTGAATCTGGCAGAGGGGGGGAGAATTCCACG0.500000
d__Bacteria;p__"Bacteroidetes";c__Sphingobacteriia;o__"Sphingobacteriales";f__ChitinophagaceaeTACGGAGGGTGCAAGCGTTATCCGGATTCACTGGGTTTAAAGGGAGCGTAGGCCGGCATGTAAGTCAGTGGTGAAATCCTGGGGCTCAACCCCGGAACTGCCATTGATACTATGTGCCTTGGATCCTGTTGAGGTCTGCGGAATATGTCA0.461538
d__Bacteria;p__"Bacteroidetes";c__Sphingobacteriia;o__"Sphingobacteriales";f__ChitinophagaceaeTACGGAGGGTGCAAGCGTTATCCGGATTCACTGGGTTTAAAGGGAGCGTAGGCGGGCATGTAAGTCAGTGGTGAAATCTTGGGGCTCAACCCCGAAACTGCCATTGATACTATGTGCCTTGGATCCTGTTGAGGTTTGCGGAATATGTCA0.444444
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Rhodospirillales;f__AcetobacteraceaeTACGAAGGGGGCTAGCGTTGCTCGGAATGACTGGGCGTAAAGGGCGCGTAGGCGGCTTGTACAGTCAGATGTGAAATTCCCGGGCTTAACCTGGGGACTGCATTTGATACGTGCGGGCTAGAGTGTGAAAGAGGGTCGTGGAATTCCCAG0.400000
d__BacteriaCACGTAGAAGACTAGTGTTATTCATCTTTATTAGGTTTAAAGGGTACCTAGACGGAAAATCAAGCCATAATAGGGACTAATTTTCTAGAGTTTTATGAGAGAAGGAGCGAATTACCGGTGGAGAGTTGATATTTTGTGATACCGGTAGGA0.400000
d__BacteriaTACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGGGTCTGTAGGTGGTTTTGACAGTCTGCTGTTAAATCTCAGGGCTCAACCCTGTTAAGGCAGCATGAAACTACGAATCTTGAGTACGGTAGGGGCAGAGGGAATTCCCG0.375000
d__BacteriaTACAAGGGAGACTAGTGTTATTCATCTTTATTAGGTTTAAAGGGTACCTAGACGGTGTATCTAGCCTGCGAGGGAACGGATACGACTAGAGTTTTATGTGGGAGGTAAATATCGTACTATGTGTGTAGAGATGAAATTCTTTGATAATAC0.375000
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__PseudomonasTACAGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTTGTTAAGTTGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCAAAACTGACTGACTAGAGTGTGGTAGAGGGTGGTGGAATTTCCTG0.375000

Annotations:

common ontology terms
Fraction of dbbact annotations with this term covered by the query
TermScore
depth 0-5cm0.666667
LOWER IN depth 8-10cm0.500000
lapland0.500000
LOWER IN lapland0.500000
depth (water) 4000m0.333333
snow0.250000
finland0.142857
LOWER IN finland0.142857
kingdom of norway0.125000
LOWER IN kingdom of norway0.125000
LOWER IN state of colorado0.111111
state of colorado0.111111
sweden0.062500
LOWER IN sweden0.062500
marine sediment0.058824
pacific ocean0.038462
LOWER IN united states of america0.003861
united states of america0.003861
Fraction of annotations for the query sequences containing the term
TermScore
depth 0-5cm1.000000
snow0.857143
lapland0.428571
kingdom of norway0.428571
finland0.428571
sweden0.428571
united states of america0.428571
state of colorado0.428571
pacific ocean0.142857
depth (water) 4000m0.142857
marine sediment0.142857
LOWER IN depth 8-10cm0.142857
LOWER IN united states of america0.142857
LOWER IN state of colorado0.142857
LOWER IN lapland0.142857
LOWER IN finland0.142857
LOWER IN kingdom of norway0.142857
LOWER IN sweden0.142857
Number of experiments associating the term to the sequence
TermScore
depth 0-5cm2.000000
pacific ocean1.000000
depth (water) 4000m1.000000
marine sediment1.000000
LOWER IN depth 8-10cm1.000000
snow1.000000
lapland1.000000
LOWER IN united states of america1.000000
LOWER IN state of colorado1.000000
kingdom of norway1.000000
finland1.000000
sweden1.000000
united states of america1.000000
state of colorado1.000000
LOWER IN lapland1.000000
LOWER IN finland1.000000
LOWER IN kingdom of norway1.000000
LOWER IN sweden1.000000

Problems / suggestions? Please email info AT dbbact DOT org