Summary for ontology term: early time points

Number of annotations with term: 22

Annotations:

common ontology terms
term enrichment score
TermScore
early time points0.691489
late time points0.557522
LOWER IN early time points0.557522
LOWER IN late time points0.460526
biomat0.421053
microbial biomat0.421053
water treatment pond0.421053
benthic biomat0.421053
engineered wetland0.421053
malaria0.153846
LOWER IN malaria0.153846
outlet0.153846
size < 1um0.153846
size 1-80um0.153846
plant fluid0.153846
harvard forest0.153846
sarracenia purpurea0.153846
pitcher plant0.153846
pitcher fluid0.153846
state of california0.144578
influent0.142857
particle bound0.133333
depth 2000-3000m0.133333
free floating0.117647
mediterranean sea0.117647
surface water0.114286
commonwealth of massachusetts0.111111
japan0.108108
balb/c0.105263
sea water0.094488
pacific ocean0.085106
experimental cerebral malaria0.083333
LOWER IN experimental cerebral malaria0.083333
fermentation/modification process0.083333
1-2 months0.083333
LOWER IN 0-1 months0.083333
fermented vegetable food product0.083333
days 0-30.083333
LOWER IN days 57-600.083333
days 57-600.083333
LOWER IN days 0-30.083333
35 weeks0.083333
LOWER IN 25 weeks0.083333
kimchi0.080000
wistar rat0.080000
depth 0m0.080000
LOWER IN depth 0m0.076923
rattus0.071429
c57bl/60.071429
LOWER IN research facility0.068966
czech republic0.068966
water0.064171
south korea0.057143
LOWER IN wild0.057143
rat0.052632
age0.046512
wild0.044444
research facility0.040268
mouse0.033058
mus musculus0.029630
united states of america0.016639
feces0.013298
LOWER IN control0.011173
control0.011111
Fraction of dbbact annotations with this term covered by the query
TermScore
late time points0.875000
LOWER IN early time points0.875000
early time points0.833333
LOWER IN late time points0.833333
experimental cerebral malaria0.500000
malaria0.500000
LOWER IN experimental cerebral malaria0.500000
LOWER IN malaria0.500000
biomat0.500000
microbial biomat0.500000
water treatment pond0.500000
benthic biomat0.500000
engineered wetland0.500000
outlet0.500000
size < 1um0.500000
size 1-80um0.500000
fermentation/modification process0.500000
1-2 months0.500000
LOWER IN 0-1 months0.500000
fermented vegetable food product0.500000
days 0-30.500000
LOWER IN days 57-600.500000
plant fluid0.500000
harvard forest0.500000
sarracenia purpurea0.500000
pitcher plant0.500000
pitcher fluid0.500000
days 57-600.500000
LOWER IN days 0-30.500000
35 weeks0.500000
LOWER IN 25 weeks0.500000
influent0.333333
kimchi0.333333
wistar rat0.333333
depth 0m0.333333
particle bound0.250000
depth 2000-3000m0.250000
LOWER IN depth 0m0.250000
free floating0.166667
rattus0.166667
mediterranean sea0.166667
LOWER IN research facility0.142857
commonwealth of massachusetts0.142857
czech republic0.142857
balb/c0.125000
state of california0.083333
surface water0.083333
japan0.076923
south korea0.076923
LOWER IN wild0.076923
rat0.062500
c57bl/60.058824
sea water0.057143
pacific ocean0.055556
age0.047619
wild0.043478
water0.036364
research facility0.021739
mouse0.018182
mus musculus0.016129
united states of america0.008475
feces0.006849
LOWER IN control0.005952
control0.005917
Fraction of annotations for the query sequences containing the term
TermScore
early time points0.590909
state of california0.545455
united states of america0.454545
late time points0.409091
LOWER IN early time points0.409091
biomat0.363636
microbial biomat0.363636
water treatment pond0.363636
benthic biomat0.363636
engineered wetland0.363636
LOWER IN late time points0.318182
research facility0.272727
water0.272727
sea water0.272727
feces0.227273
mus musculus0.181818
mouse0.181818
japan0.181818
surface water0.181818
pacific ocean0.181818
malaria0.090909
LOWER IN control0.090909
c57bl/60.090909
control0.090909
LOWER IN malaria0.090909
balb/c0.090909
influent0.090909
outlet0.090909
free floating0.090909
size < 1um0.090909
particle bound0.090909
size 1-80um0.090909
commonwealth of massachusetts0.090909
plant fluid0.090909
harvard forest0.090909
sarracenia purpurea0.090909
pitcher plant0.090909
pitcher fluid0.090909
mediterranean sea0.090909
depth 2000-3000m0.090909
experimental cerebral malaria0.045455
LOWER IN experimental cerebral malaria0.045455
fermentation/modification process0.045455
1-2 months0.045455
LOWER IN 0-1 months0.045455
kimchi0.045455
fermented vegetable food product0.045455
south korea0.045455
wild0.045455
days 0-30.045455
LOWER IN research facility0.045455
LOWER IN days 57-600.045455
days 57-600.045455
LOWER IN wild0.045455
LOWER IN days 0-30.045455
age0.045455
35 weeks0.045455
LOWER IN 25 weeks0.045455
rattus0.045455
czech republic0.045455
rat0.045455
wistar rat0.045455
depth 0m0.045455
LOWER IN depth 0m0.045455
Exp. ID User ID Description Date Region Flag Sequences
705amnonincreases during kimchi fermentation ( high in late time points fermentation/modification process 1-2 months compared to early time points 0-1 months in kimchi fermented vegetable food product south korea )2028-04-04v3No1 / -3
665amnondominant united states of america, state of california, influent, early time points, biomat, microbial biomat, water treatment pond, benthic biomat, engineered wetland2020-09-23v4No1 / 0
665amnondominant united states of america, state of california, early time points, biomat, microbial biomat, water treatment pond, benthic biomat, engineered wetland, outlet2020-09-23v4No1 / 2
665amnondominant united states of america, state of california, early time points, biomat, microbial biomat, water treatment pond, benthic biomat, engineered wetland2020-09-23v4No1 / 7
503amnonincreases following malaria infection ( high in late time points malaria compared to control early time points in feces research facility mus musculus balb/c mouse japan )2019-03-12v4No1 / 9
614amnonincreases in picher plant fluid grown in lab ( high in research facility late time points days 57-60 compared to early time points wild days 0-3 in united states of america commonwealth of massachusetts plant fluid harvard forest sarracenia purpurea pitcher plant pitcher fluid )2020-04-26v4No1 / 12
503amnondecreases following malaria infection ( high in control early time points compared to late time points malaria in feces research facility mus musculus balb/c mouse japan )2019-03-12v4No1 / 21
187amnonpositively correlated with age 25-35 weeks ( high in age late time points 35 weeks compared to early time points 25 weeks in feces research facility rattus czech republic rat wistar rat )2017-08-23v4No1 / 25
503amnonincreases following malaria infection ( high in late time points experimental cerebral malaria malaria compared to control early time points in feces research facility mus musculus c57bl/6 mouse japan )2019-03-12v4No1 / 30
614amnondecreases in picher plant fluid grown in lab ( high in early time points wild days 0-3 compared to research facility late time points days 57-60 in united states of america commonwealth of massachusetts plant fluid harvard forest sarracenia purpurea pitcher plant pitcher fluid )2020-04-26v4No1 / 34
503amnondecreases following malaria infection ( high in control early time points compared to late time points experimental cerebral malaria malaria in feces research facility mus musculus c57bl/6 mouse japan )2019-03-12v4No1 / 50
505amnon high in early time points compared to late time points in water surface water sea water state of california pacific ocean free floating size < 1um 2019-03-16v4No1 / 88
500amnonincreases when incubating water sample from depth 2100m at depth 0m for one year ( high in late time points depth 0m compared to early time points in water sea water mediterranean sea depth 2000-3000m )2019-03-05v4No1 / 106
500amnondecreases when incubating water sample from depth 2100m at depth 0m for one year ( high in early time points compared to late time points depth 0m in water sea water mediterranean sea depth 2000-3000m )2019-03-05v4No1 / 124
505amnon high in early time points compared to late time points in water surface water sea water state of california pacific ocean particle bound size 1-80um 2019-03-16v4No1 / 215
665amnoncommon united states of america, state of california, early time points, biomat, microbial biomat, water treatment pond, benthic biomat, engineered wetland2020-09-23v4No1 / 222
505amnon high in late time points compared to early time points in water surface water sea water state of california pacific ocean free floating size < 1um 2019-03-16v4No1 / 241
665amnoncommon united states of america, state of california, early time points, biomat, microbial biomat, water treatment pond, benthic biomat, engineered wetland, outlet2020-09-23v4No1 / 245
665amnoncommon united states of america, state of california, influent, early time points, biomat, microbial biomat, water treatment pond, benthic biomat, engineered wetland2020-09-23v4No1 / 294
505amnon high in late time points compared to early time points in water surface water sea water state of california pacific ocean particle bound size 1-80um 2019-03-16v4No1 / 604
665amnon high in late time points compared to early time points in united states of america state of california biomat microbial biomat water treatment pond benthic biomat engineered wetland 2020-09-23v4No1 / 877
665amnon high in early time points compared to late time points in united states of america state of california biomat microbial biomat water treatment pond benthic biomat engineered wetland 2020-09-23v4No1 / 1045

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