Summary for ontology term: early time points

Number of annotations with term: 22

Annotations:

common ontology terms
term enrichment score
TermScore
early time points0.691489
late time points0.557522
LOWER IN early time points0.557522
LOWER IN late time points0.460526
engineered wetland0.421053
benthic biomat0.421053
water treatment pond0.421053
microbial biomat0.421053
biomat0.421053
state of california0.155844
malaria0.153846
LOWER IN malaria0.153846
outlet0.153846
size < 1um0.153846
size 1-80um0.153846
harvard forest0.153846
plant fluid0.153846
pitcher fluid0.153846
pitcher plant0.153846
sarracenia purpurea0.153846
influent0.142857
particle bound0.142857
depth 2000-3000m0.142857
surface water0.129032
free floating0.125000
commonwealth of massachusetts0.125000
mediterranean sea0.125000
japan0.121212
balb/c0.105263
sea water0.099174
pacific ocean0.085106
experimental cerebral malaria0.083333
LOWER IN experimental cerebral malaria0.083333
fermented vegetable food product0.083333
1-2 months0.083333
LOWER IN 0-1 months0.083333
fermentation/modification process0.083333
LOWER IN days 57-600.083333
days 0-30.083333
LOWER IN days 0-30.083333
days 57-600.083333
35 weeks0.083333
LOWER IN 25 weeks0.083333
kimchi0.080000
wistar rat0.080000
depth 0m0.080000
LOWER IN depth 0m0.076923
c57bl/60.074074
LOWER IN research facility0.074074
rattus0.071429
czech republic0.068966
water0.065217
south korea0.062500
LOWER IN wild0.062500
rat0.054054
wild0.048780
age0.046512
research facility0.046154
mouse0.034783
mus musculus0.031008
united states of america0.017986
feces0.014937
LOWER IN control0.012121
control0.012048
Fraction of dbbact annotations with this term covered by the query
TermScore
late time points0.875000
LOWER IN early time points0.875000
early time points0.833333
LOWER IN late time points0.833333
experimental cerebral malaria0.500000
malaria0.500000
LOWER IN experimental cerebral malaria0.500000
LOWER IN malaria0.500000
engineered wetland0.500000
benthic biomat0.500000
water treatment pond0.500000
microbial biomat0.500000
biomat0.500000
outlet0.500000
size < 1um0.500000
size 1-80um0.500000
fermented vegetable food product0.500000
1-2 months0.500000
LOWER IN 0-1 months0.500000
fermentation/modification process0.500000
LOWER IN days 57-600.500000
days 0-30.500000
harvard forest0.500000
plant fluid0.500000
pitcher fluid0.500000
pitcher plant0.500000
sarracenia purpurea0.500000
LOWER IN days 0-30.500000
days 57-600.500000
35 weeks0.500000
LOWER IN 25 weeks0.500000
influent0.333333
particle bound0.333333
kimchi0.333333
wistar rat0.333333
depth 2000-3000m0.333333
depth 0m0.333333
LOWER IN depth 0m0.250000
free floating0.200000
LOWER IN research facility0.200000
commonwealth of massachusetts0.200000
mediterranean sea0.200000
rattus0.166667
czech republic0.142857
balb/c0.125000
surface water0.100000
south korea0.100000
LOWER IN wild0.100000
japan0.090909
state of california0.090909
rat0.066667
c57bl/60.062500
sea water0.060606
pacific ocean0.055556
wild0.052632
age0.047619
water0.037037
research facility0.025210
mouse0.019231
mus musculus0.016949
united states of america0.009174
feces0.007722
LOWER IN control0.006494
control0.006452
Fraction of annotations for the query sequences containing the term
TermScore
early time points0.590909
state of california0.545455
united states of america0.454545
late time points0.409091
LOWER IN early time points0.409091
engineered wetland0.363636
benthic biomat0.363636
water treatment pond0.363636
microbial biomat0.363636
biomat0.363636
LOWER IN late time points0.318182
research facility0.272727
water0.272727
sea water0.272727
feces0.227273
mouse0.181818
mus musculus0.181818
japan0.181818
pacific ocean0.181818
surface water0.181818
c57bl/60.090909
LOWER IN control0.090909
malaria0.090909
control0.090909
LOWER IN malaria0.090909
balb/c0.090909
influent0.090909
outlet0.090909
size < 1um0.090909
free floating0.090909
particle bound0.090909
size 1-80um0.090909
harvard forest0.090909
plant fluid0.090909
pitcher fluid0.090909
commonwealth of massachusetts0.090909
pitcher plant0.090909
sarracenia purpurea0.090909
mediterranean sea0.090909
depth 2000-3000m0.090909
experimental cerebral malaria0.045455
LOWER IN experimental cerebral malaria0.045455
south korea0.045455
kimchi0.045455
fermented vegetable food product0.045455
1-2 months0.045455
LOWER IN 0-1 months0.045455
fermentation/modification process0.045455
LOWER IN research facility0.045455
LOWER IN days 57-600.045455
wild0.045455
days 0-30.045455
LOWER IN wild0.045455
LOWER IN days 0-30.045455
days 57-600.045455
rat0.045455
rattus0.045455
wistar rat0.045455
czech republic0.045455
age0.045455
35 weeks0.045455
LOWER IN 25 weeks0.045455
depth 0m0.045455
LOWER IN depth 0m0.045455
Exp. ID User ID Description Date Region Flag Sequences
705amnonincreases during kimchi fermentation ( high in late time points 1-2 months fermentation/modification process compared to early time points 0-1 months in south korea kimchi fermented vegetable food product )2028-04-04v3No1 / 4
665amnondominant early time points, engineered wetland, benthic biomat, state of california, influent, water treatment pond, microbial biomat, biomat, united states of america2020-09-23v4No1 / 7
665amnondominant outlet, early time points, engineered wetland, benthic biomat, state of california, water treatment pond, microbial biomat, biomat, united states of america2020-09-23v4No1 / 9
665amnondominant early time points, engineered wetland, benthic biomat, state of california, water treatment pond, microbial biomat, biomat, united states of america2020-09-23v4No1 / 14
503amnonincreases following malaria infection ( high in late time points malaria compared to control early time points in mouse mus musculus research facility feces balb/c japan )2019-03-12v4No1 / 16
614amnonincreases in picher plant fluid grown in lab ( high in research facility days 57-60 late time points compared to wild days 0-3 early time points in harvard forest plant fluid pitcher fluid united states of america commonwealth of massachusetts pitcher plant sarracenia purpurea )2020-04-26v4No1 / 19
503amnondecreases following malaria infection ( high in control early time points compared to late time points malaria in mouse mus musculus research facility feces balb/c japan )2019-03-12v4No1 / 28
187amnonpositively correlated with age 25-35 weeks ( high in late time points age 35 weeks compared to early time points 25 weeks in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 32
503amnonincreases following malaria infection ( high in late time points experimental cerebral malaria malaria compared to control early time points in mouse mus musculus research facility c57bl/6 feces japan )2019-03-12v4No1 / 37
614amnondecreases in picher plant fluid grown in lab ( high in wild early time points days 0-3 compared to research facility late time points days 57-60 in harvard forest plant fluid pitcher fluid united states of america commonwealth of massachusetts pitcher plant sarracenia purpurea )2020-04-26v4No1 / 41
503amnondecreases following malaria infection ( high in control early time points compared to late time points experimental cerebral malaria malaria in mouse mus musculus research facility c57bl/6 feces japan )2019-03-12v4No1 / 57
505amnon high in early time points compared to late time points in water pacific ocean state of california surface water size < 1um free floating sea water 2019-03-16v4No1 / 95
500amnonincreases when incubating water sample from depth 2100m at depth 0m for one year ( high in late time points depth 0m compared to early time points in water mediterranean sea depth 2000-3000m sea water )2019-03-05v4No1 / 113
500amnondecreases when incubating water sample from depth 2100m at depth 0m for one year ( high in early time points compared to depth 0m late time points in water mediterranean sea depth 2000-3000m sea water )2019-03-05v4No1 / 131
505amnon high in early time points compared to late time points in water pacific ocean state of california surface water particle bound size 1-80um sea water 2019-03-16v4No1 / 222
665amnoncommon early time points, engineered wetland, benthic biomat, state of california, water treatment pond, microbial biomat, biomat, united states of america2020-09-23v4No1 / 229
505amnon high in late time points compared to early time points in water pacific ocean state of california surface water size < 1um free floating sea water 2019-03-16v4No1 / 248
665amnoncommon outlet, early time points, engineered wetland, benthic biomat, state of california, water treatment pond, microbial biomat, biomat, united states of america2020-09-23v4No1 / 252
665amnoncommon engineered wetland, early time points, benthic biomat, state of california, influent, water treatment pond, microbial biomat, biomat, united states of america2020-09-23v4No1 / 301
505amnon high in late time points compared to early time points in water pacific ocean state of california surface water particle bound size 1-80um sea water 2019-03-16v4No1 / 611
665amnon high in late time points compared to early time points in engineered wetland benthic biomat state of california water treatment pond microbial biomat biomat united states of america 2020-09-23v4No1 / 884
665amnon high in early time points compared to late time points in engineered wetland benthic biomat state of california water treatment pond microbial biomat biomat united states of america 2020-09-23v4No1 / 1052

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