Summary for ontology term: early timepoints

Number of annotations with term: 23

Annotations:

common ontology terms
term enrichment score
TermScore
early timepoints0.657534
LOWER IN early timepoints0.613953
LOWER IN late timepoints0.592308
late timepoints0.540541
texas0.510638
LOWER IN fasting0.315789
nile tilapia0.258065
fasting0.255319
oreochromis niloticus0.228571
colon0.162162
state of rhode island0.148148
kimchi0.148148
rice field0.148148
coastal water0.148148
commonwealth of massachusetts0.148148
chitin beads0.148148
coturnix coturnix0.148148
common quail0.148148
nzb/w f10.148148
state of georgia0.137931
rice0.129032
cow0.121212
oryza sativa0.121212
hunan province0.121212
fermented food product0.114286
atlantic ocean0.108108
mouse0.103704
surface water0.102564
bos taurus0.097561
mus musculus0.092511
caecum0.080537
days 1-90.080000
LOWER IN days 1-90.080000
0-2 days0.080000
LOWER IN 30-60 days0.080000
30-60 days0.080000
LOWER IN 0-2 days0.080000
anaxyrus terrestris0.080000
southern toad0.080000
age 25 weeks0.080000
LOWER IN age 35 weeks0.080000
age 10-18 weeks0.080000
LOWER IN 23-33 weeks0.080000
latetimepoints0.080000
age 23-33 weeks0.080000
LOWER IN 10-18 weeks0.080000
research facility0.079893
LOWER IN day 00.076923
day 00.076923
LOWER IN seedling0.076923
seedling0.076923
wistar rat0.076923
LOWER IN systemic lupus erythematosus0.076923
systemic lupus erythematosus0.076923
czech republic0.074074
ocean water0.070175
rattus0.068966
LOWER IN age0.068966
united states of america0.065970
farm0.063492
rat0.057143
rhizosphere0.054795
water0.036036
soil0.033058
feces0.029732
china0.021858
LOWER IN control0.014815
control0.014706
Fraction of dbbact annotations with this term covered by the query
TermScore
early timepoints0.888889
LOWER IN early timepoints0.857143
LOWER IN late timepoints0.777778
late timepoints0.714286
state of rhode island0.500000
kimchi0.500000
days 1-90.500000
LOWER IN days 1-90.500000
0-2 days0.500000
LOWER IN 30-60 days0.500000
30-60 days0.500000
LOWER IN 0-2 days0.500000
texas0.500000
rice field0.500000
nile tilapia0.500000
coastal water0.500000
commonwealth of massachusetts0.500000
chitin beads0.500000
anaxyrus terrestris0.500000
southern toad0.500000
age 25 weeks0.500000
LOWER IN age 35 weeks0.500000
coturnix coturnix0.500000
common quail0.500000
nzb/w f10.500000
age 10-18 weeks0.500000
LOWER IN 23-33 weeks0.500000
latetimepoints0.500000
age 23-33 weeks0.500000
LOWER IN 10-18 weeks0.500000
LOWER IN fasting0.400000
LOWER IN day 00.333333
day 00.333333
state of georgia0.333333
LOWER IN seedling0.333333
seedling0.333333
oreochromis niloticus0.333333
wistar rat0.333333
LOWER IN systemic lupus erythematosus0.333333
systemic lupus erythematosus0.333333
rice0.250000
fasting0.250000
czech republic0.250000
cow0.200000
oryza sativa0.200000
hunan province0.200000
fermented food product0.166667
rattus0.166667
LOWER IN age0.166667
atlantic ocean0.142857
surface water0.125000
colon0.117647
bos taurus0.111111
rat0.083333
mouse0.062500
ocean water0.058824
mus musculus0.054545
farm0.050000
caecum0.047619
research facility0.042553
rhizosphere0.040000
united states of america0.034286
water0.022727
soil0.020408
feces0.015957
china0.012500
LOWER IN control0.008929
control0.008850
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.869565
research facility0.652174
early timepoints0.521739
texas0.521739
LOWER IN early timepoints0.478261
LOWER IN late timepoints0.478261
late timepoints0.434783
mus musculus0.304348
mouse0.304348
colon0.260870
LOWER IN fasting0.260870
fasting0.260870
caecum0.260870
feces0.217391
oreochromis niloticus0.173913
nile tilapia0.173913
state of rhode island0.086957
fermented food product0.086957
kimchi0.086957
bos taurus0.086957
cow0.086957
farm0.086957
state of georgia0.086957
soil0.086957
rhizosphere0.086957
oryza sativa0.086957
rice0.086957
china0.086957
hunan province0.086957
rice field0.086957
water0.086957
ocean water0.086957
atlantic ocean0.086957
surface water0.086957
coastal water0.086957
commonwealth of massachusetts0.086957
chitin beads0.086957
coturnix coturnix0.086957
common quail0.086957
nzb/w f10.086957
days 1-90.043478
LOWER IN day 00.043478
day 00.043478
LOWER IN days 1-90.043478
0-2 days0.043478
LOWER IN 30-60 days0.043478
30-60 days0.043478
LOWER IN 0-2 days0.043478
LOWER IN seedling0.043478
seedling0.043478
anaxyrus terrestris0.043478
southern toad0.043478
rat0.043478
rattus0.043478
wistar rat0.043478
czech republic0.043478
age 25 weeks0.043478
LOWER IN age 35 weeks0.043478
LOWER IN age0.043478
control0.043478
age 10-18 weeks0.043478
LOWER IN 23-33 weeks0.043478
LOWER IN systemic lupus erythematosus0.043478
systemic lupus erythematosus0.043478
latetimepoints0.043478
age 23-33 weeks0.043478
LOWER IN control0.043478
LOWER IN 10-18 weeks0.043478
Exp. ID User ID Description Date Sequences
108amnondecreases during fasting in nile tilapia colon ( high in early timepoints compared to fasting late timepoints in research facility texas united states of america colon oreochromis niloticus nile tilapia )2017-04-071 / 4
311amnonhigher in fermneted kimchi days>1 compared to day 0 ( high in late timepoints days 1-9 compared to day 0 early timepoints in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 6
108amnonincreases during fasting in nile tilapia caecum ( high in fasting late timepoints compared to early timepoints in research facility texas united states of america caecum oreochromis niloticus nile tilapia )2017-04-071 / 17
108amnonincreases during fasting in mouse caecum ( high in fasting late timepoints compared to early timepoints in research facility texas united states of america caecum mus musculus mouse )2017-04-071 / 19
187amnonnegatively correlated with age 25-35 weeks ( high in early timepoints age 25 weeks compared to late timepoints age 35 weeks age in rat rattus research facility feces wistar rat czech republic )2017-08-231 / 23
108amnondecreases during fasting in mouse caecum ( high in early timepoints compared to fasting late timepoints in research facility texas united states of america caecum mus musculus mouse )2017-04-071 / 29
108amnonincreases during fasting in mouse colon ( high in fasting late timepoints compared to early timepoints in research facility texas united states of america colon mus musculus mouse )2017-04-071 / 31
108amnonincreases during fasting in quail caecum ( high in fasting late timepoints compared to early timepoints in research facility texas united states of america caecum coturnix coturnix common quail )2017-04-071 / 33
108amnonincreases during fasting in southern frog colon ( high in fasting late timepoints compared to early timepoints in research facility texas united states of america colon anaxyrus terrestris southern toad )2017-04-071 / 45
108amnondecreases during fasting in mouse colon ( high in early timepoints compared to fasting late timepoints in research facility texas united states of america colon mus musculus mouse )2017-04-071 / 59
311amnonlower in fermneted kimchi days>1 compared to day 0 ( high in day 0 early timepoints compared to days 1-9 in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 62
373amnonlower in soil of mature plants compared to seedlings ( high in early timepoints seedling compared to late timepoints in soil rhizosphere oryza sativa rice china hunan province rice field )2018-09-081 / 66
108amnondecreases during fasting in quail caecum ( high in early timepoints compared to fasting late timepoints in research facility texas united states of america caecum coturnix coturnix common quail )2017-04-071 / 76
373amnonhigher in soil of mature plants compared to seedlings ( high in late timepoints compared to seedling early timepoints in soil rhizosphere oryza sativa rice china hunan province rice field )2018-09-081 / 81
108amnonincreases during fasting in nile tilapia colon ( high in fasting late timepoints compared to early timepoints in research facility texas united states of america colon oreochromis niloticus nile tilapia )2017-04-071 / 81
107amnondecreases during fasting in mouse colon ( high in early timepoints compared to fasting late timepoints in research facility texas united states of america colon mus musculus mouse )2017-04-071 / 120
108amnondecreases during fasting in nile tilapia caecum ( high in early timepoints compared to fasting late timepoints in research facility texas united states of america caecum oreochromis niloticus nile tilapia )2017-04-071 / 122
368amnonlower in nzb/w f1 mice late timepoints (SLE model) compared to early timepoints ( high in control early timepoints age 10-18 weeks compared to late timepoints 23-33 weeks systemic lupus erythematosus in feces united states of america mouse mus musculus research facility nzb/w f1 )2018-09-031 / 132
461amnonlower in early compared to late timepoints in chitin beads incubated in ocean water ( high in late timepoints compared to early timepoints in water ocean water atlantic ocean surface water coastal water united states of america commonwealth of massachusetts chitin beads )2019-01-121 / 141
461amnonhigher in early compared to late timepoints in chitin beads incubated in ocean water ( high in early timepoints compared to late timepoints in water ocean water atlantic ocean surface water coastal water united states of america commonwealth of massachusetts chitin beads )2019-01-121 / 160
368amnonhigher in nzb/w f1 mice late timepoints (SLE model) compared to early timepoints ( high in systemic lupus erythematosus latetimepoints age 23-33 weeks compared to control early timepoints 10-18 weeks in feces united states of america mouse mus musculus research facility nzb/w f1 )2018-09-031 / 265
466amnonhigher in cow feces left in field for 30-60 days compared to initial feces ( high in late timepoints 30-60 days compared to early timepoints 0-2 days in feces bos taurus cow farm united states of america state of georgia )2019-01-141 / 662
466amnonlower in cow feces left in field for 30-60 days compared to initial feces ( high in early timepoints 0-2 days compared to late timepoints 30-60 days in feces bos taurus cow farm united states of america state of georgia )2019-01-141 / 1329

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