dbBact taxonomy

Taxonomy	Sequence	Recall
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCGATGCAAGTCTGGAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTATGGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAG	0.307692
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus	TACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTAGATAAGTCTGAAGTTAAAGGCTGTGGCTTAACCATAGTACGCTTTGGAAACTGTTTAACTTGAGTGCAAGAGGGGAGAGTGGAATTCCATGT	0.230769
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGTGTAGGTGGCCATGCAAGTCAGAAGTGAAAATCCGGGGCTCAACCCCGGAACTGCTTTTGAAACTGTGAGGCTAGAGTGCAGGAGGGGTGAGTGGAATTCCTAG	0.230769
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCACTGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTAGAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAG	0.230769
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia	TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGTGCGGCAAGTCTGATGTGAAAGCCCGGGGCTCAACCCCGGTACTGCATTGGAAACTGTCGTACTAGAGTGTCGGAGGGGTAAGCGGAATTCCTAG	0.230769
d__Bacteria	TACGTAGGGGGCGAGCGTTATCCGGATTTATTGGGCGTAAAGCGTGTGTAGGCGGTTTATTAAGTTTAAGATTAAAGCCCGGGGCTCAACTCCGGTAAGTCTTAAAAACTGGTAGACTTGAGTACGGTAGAGGCAAACGGAATTTCTAGT	0.230769
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAAGGCAAGTCTGATGTGAAAGGCTGGGGCTCAACCCCGGGACTGCATTGGAAACTGTCCTGCTGGAGTGCCGGAGAGGTAAGCGGAATTCCTAG	0.230769
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella	TACGTAGGTGGCGAGCGTTATCCGGAATGATTGGGCGTAAAGGGTGCGTAGGTGGCAGAACAAGTCTGGAGTAAAAGGTATGGGCTCAACCCGTACTGGCTCTGGAAACTGTTCAGCTAGAGAACAGAAGAGGACGGCGGAACTCCATGT	0.230769
d__Bacteria	TACGTAGGGAGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGTGCGTAGACGGGAGATTAAGTTAGTTGTGAAAGCCCTTGGCTTAACTGAGGAATTGCAACTAAAACTGGTTTTCTTGAGTGCAGGAGAGGTAAGTGGAATTCCTAG	0.230769
d__Bacteria	TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACGCGCAAGTCTGCGGTCAAATTCCGGGGCTCAACCCCGGACCGCCGTGGAAACTGTGCGACTAGAGTGGGCGAGAGGCATGCGGAATGCGCGGT	0.230769

Taxonomy	Sequence	Recall
d__Bacteria	TACGTAGGGAGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGTGCGTAGACGGGAAAATAAGTTAGTTGTGAAATCCCCATGCTTAACATGGGAACTGCAACTAAAACTGTTTTTCTTGAGTGCTGGAGAGGAAAGTGGAATTCCTAG	0.600000
d__Bacteria;p__Firmicutes	TACGTAGGTGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGTGCGTAGGTGGCGTACTAAGTCTGTAGTAAAAGGCAATGGCTCAACCATTGTAAGCTATGGAAACTGGTAGGCTAGAGTGCAGAAGAGGGCGATGGAATTCCATGT	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Christensenellaceae;g__Christensenella	TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTCATGTAAGTCAGATGTGAAAGACCCGGGCTTAACCCGGGGGCTGCATTTGAAACTGTGTGACTTGAGTACAGGAGAGGGAAGTGGAATTCCTAG	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1;g__Clostridium sensu stricto	TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGATTTTTAAGTGAGATGTGAAATACTCGGGCTTAACCTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAAGGGAATTCCTAG	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae	TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGAATGTTTAAACTATCGGCTCAACTGATAGTCGCGTTCAAAACTGCAACTCTTGAGTGAAGTAGAGGTAGGCGGAATTCCTAGT	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGAACAGCAAGTCTGATGTGAAAACCCGGGGCTCAACCCCGGGACTGCATTGGAAACTGTTGATCTAGAGTGTCGGAGAGGTAAGTGGAATTCCTAG	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Lachnospiracea_incertae_sedis	TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGTGCGTAGGTGGCAGTGCAAGTCAGATGTGAAAGGCCGGGGCTCAACCCCGGAGCTGCATTTGAAACTGCGCGGCTAGAGTACAGGAGAGGCAGGCGGAATTCCTAG	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Eubacteriaceae;g__Anaerofustis	TACGTAGGGAGCAAGCGTTGTCCGGATTCACTGGGCGTAAAGAGCACGTAGGCGGTTAATTAAGTCAGGTGTGAAAGTTTTCGGCTCAACCGGAAAAGTGCACTTGAAACTGGATAACTTGAGTATCGGAGAGGTAAGCGGAATTCCTAG	0.400000
d__Bacteria	TACGTAGGGGGCGAGCGTTGTCCGGAATGACTGGGCGTAAAGGGCGTGTAGGCGGCTTTTTAAGTCTGGAGTGAAAGCCCCTTTTTCAAGGAGGGGAGTGCTTTGGAGACTGGAGAGCTTGAGTGCGGAAGAGGTAAGTGGAATTCCCAG	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Eubacteriaceae;g__Eubacterium	TACGTAGGGGACAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGCGCGTAGGCGGTCTATTAAGTCTGATGTGAAAGGTACCGGCTCAACCGGTGAAGTGCATTGGAAACTGGTAGACTTGAGTATTGGAGAGGCAAGTGGAATTCCTAG	0.400000

Taxonomy	Sequence	F-Score
d__Bacteria;p__Cyanobacteria/Chloroplast;c__Chloroplast;f__Chloroplast;g__Streptophyta	TACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCTCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGAAAACTACCAAGCTAGAGTACGGTAGGGGCAGAGGGAATTTCCGG	0.352941
d__Bacteria	TACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTG	0.352941
d__Bacteria;p__"Bacteroidetes"	TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGGCTGCGAGGCAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGTCTTGCTAGAGTTCGAGTGAGGTATGCGGAATGTGTTGT	0.352941
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Veillonellaceae;g__Dialister	TACGTAGGTGACAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGCTTTCTAAGTCCATCTTAAAAGTGCGGGGCTTAACCCCGTGATGGGATGGAAACTGGAAAGCTGGAGTATCGGAGAGGAAAGTGGAATTCCTAGT	0.352941
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae	TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCTTTGCAAGTCAGATGTGAAATCTATGGGCTTAACCCATAAACTGCATTTGAAACTGTAGAGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCCG	0.352941
d__Bacteria;p__"Synergistetes";c__Synergistia;o__Synergistales;f__Synergistaceae;g__Cloacibacillus	TACGTAGGGGGCGAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGCAGGCTGGCCGTTAAGTCTGTCGTCAAAGGCGGAGGCTCAACCTCCGTTCTACGATAGATACTGTCGGTCTAGAGTATGTGAGAGGGAAGTGGAATTCCCGG	0.352941
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Ruminococcus	TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGCAGGCGGGATGGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGACTGCATTTGAAACTGTTGTTCTTGAGTGAGGTAGAGGTAAGCGGAATTCCTGG	0.352941
d__Bacteria	TACGTAGGGGGCGAGCGTTATCCGGATTTATTGGGCGTAAAGCGTGTGTAGGCGGTTTATTAAGTTTAAGATTAAAGTCCGGGGCTCAACTCCGGTAAGTCTTAAAAACTGGTAGACTTGAGTACGGTAGAGGCAAACGGAATTTCTAGT	0.333333
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium	TACGTAGGTCACAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGCAGGCGGGAAGACAAGTTGGAAGTGAAATCCATGGGCTCAACCCATGAACTGCTTTCAAAACTGTTTTTCTTGAGTAGTGCAGAGGTAGGCGGAATTCCCGG	0.333333
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1;g__Clostridium sensu stricto	TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACCCGAGCTCAACTTGGGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAG	0.333333

term enrichment score

Term	Score
fifth decade human stage	0.750000
fourth decade human stage	0.500000
LOWER IN fifth decade human stage	0.363636
LOWER IN fourth decade human stage	0.307692
LOWER IN 65-79 year-old human stage	0.214286
65-79 year-old human stage	0.214286
systemic lupus erythematosus	0.214286
guangzhou city prefecture	0.206897
LOWER IN tenth decade human stage	0.200000
LOWER IN age >94	0.200000
tenth decade human stage	0.200000
age >94	0.200000
LOWER IN ninth decade human stage	0.181818
ninth decade human stage	0.181818
jiangsu province	0.125000
soldiers	0.111111
LOWER IN young adult stage	0.111111
LOWER IN soldiers	0.111111
age 3-6	0.111111
age 8-12	0.111111
LOWER IN 6-12 year-old child stage	0.111111
LOWER IN age 3-6	0.111111
LOWER IN age 8-12	0.111111
young adult stage	0.100000
LOWER IN human late adulthood stage	0.100000
6-12 year-old child stage	0.100000
LOWER IN 2-5 year-old child stage	0.100000
LOWER IN systemic lupus erythematosus	0.100000
south korea	0.086957
human late adulthood stage	0.083333
2-5 year-old child stage	0.083333
age	0.068966
LOWER IN child	0.066667
LOWER IN adult	0.060606
child	0.032258
female	0.027523
china	0.020483
adult	0.019088
homo sapiens	0.018405
feces	0.015544
LOWER IN control	0.009434
control	0.009217

Fraction of dbbact annotations with this term covered by the query

Term	Score
fifth decade human stage	0.750000
LOWER IN fifth decade human stage	0.666667
LOWER IN tenth decade human stage	0.500000
LOWER IN age >94	0.500000
soldiers	0.500000
tenth decade human stage	0.500000
LOWER IN young adult stage	0.500000
age >94	0.500000
LOWER IN soldiers	0.500000
age 3-6	0.500000
age 8-12	0.500000
LOWER IN 6-12 year-old child stage	0.500000
LOWER IN age 3-6	0.500000
LOWER IN age 8-12	0.500000
LOWER IN fourth decade human stage	0.400000
fourth decade human stage	0.375000
LOWER IN ninth decade human stage	0.333333
ninth decade human stage	0.333333
young adult stage	0.250000
LOWER IN 65-79 year-old human stage	0.250000
65-79 year-old human stage	0.250000
LOWER IN human late adulthood stage	0.250000
6-12 year-old child stage	0.250000
LOWER IN 2-5 year-old child stage	0.250000
systemic lupus erythematosus	0.250000
LOWER IN systemic lupus erythematosus	0.250000
guangzhou city prefecture	0.142857
human late adulthood stage	0.125000
2-5 year-old child stage	0.125000
jiangsu province	0.125000
LOWER IN child	0.071429
south korea	0.066667
age	0.047619
LOWER IN adult	0.040000
child	0.021739
female	0.014286
china	0.010363
adult	0.009709
homo sapiens	0.009288
feces	0.007833
LOWER IN control	0.005102
control	0.004975

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
feces	1.000000
china	0.875000
fifth decade human stage	0.750000
fourth decade human stage	0.750000
adult	0.562500
guangzhou city prefecture	0.375000
female	0.375000
LOWER IN fifth decade human stage	0.250000
LOWER IN fourth decade human stage	0.250000
LOWER IN 65-79 year-old human stage	0.187500
65-79 year-old human stage	0.187500
systemic lupus erythematosus	0.187500
LOWER IN tenth decade human stage	0.125000
LOWER IN ninth decade human stage	0.125000
LOWER IN adult	0.125000
LOWER IN age >94	0.125000
tenth decade human stage	0.125000
ninth decade human stage	0.125000
age >94	0.125000
age	0.125000
south korea	0.125000
jiangsu province	0.125000
young adult stage	0.062500
soldiers	0.062500
LOWER IN young adult stage	0.062500
LOWER IN soldiers	0.062500
human late adulthood stage	0.062500
LOWER IN human late adulthood stage	0.062500
6-12 year-old child stage	0.062500
2-5 year-old child stage	0.062500
age 3-6	0.062500
age 8-12	0.062500
child	0.062500
LOWER IN 6-12 year-old child stage	0.062500
LOWER IN 2-5 year-old child stage	0.062500
LOWER IN age 3-6	0.062500
LOWER IN age 8-12	0.062500
LOWER IN child	0.062500
LOWER IN systemic lupus erythematosus	0.062500
control	0.062500
LOWER IN control	0.062500

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	3.000000
feces	3.000000
fifth decade human stage	3.000000
fourth decade human stage	3.000000
LOWER IN fifth decade human stage	2.000000
LOWER IN fourth decade human stage	2.000000
china	2.000000
adult	2.000000
LOWER IN tenth decade human stage	1.000000
LOWER IN ninth decade human stage	1.000000
young adult stage	1.000000
LOWER IN 65-79 year-old human stage	1.000000
LOWER IN adult	1.000000
LOWER IN age >94	1.000000
soldiers	1.000000
tenth decade human stage	1.000000
ninth decade human stage	1.000000
LOWER IN young adult stage	1.000000
65-79 year-old human stage	1.000000
age >94	1.000000
LOWER IN soldiers	1.000000
human late adulthood stage	1.000000
age	1.000000
south korea	1.000000
LOWER IN human late adulthood stage	1.000000
6-12 year-old child stage	1.000000
2-5 year-old child stage	1.000000
age 3-6	1.000000
age 8-12	1.000000
child	1.000000
LOWER IN 6-12 year-old child stage	1.000000
LOWER IN 2-5 year-old child stage	1.000000
LOWER IN age 3-6	1.000000
LOWER IN age 8-12	1.000000
LOWER IN child	1.000000
jiangsu province	1.000000
guangzhou city prefecture	1.000000
female	1.000000
systemic lupus erythematosus	1.000000
LOWER IN systemic lupus erythematosus	1.000000
control	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
131	amnon	positively correlated with age (30-80 years) ( high in human late adulthood stage age compared to fifth decade human stage fourth decade human stage in homo sapiens feces south korea )	2017-04-16	v4	1 / 1	approved	No
707	amnon	high in systemic lupus erythematosus compared to control in fifth decade human stage fourth decade human stage guangzhou city prefecture adult female china homo sapiens feces	2028-04-11	v3	1 / 15	approved	No
707	amnon	high in control compared to systemic lupus erythematosus in fifth decade human stage fourth decade human stage guangzhou city prefecture adult female china homo sapiens feces	2028-04-11	v3	1 / 19	approved	No
707	amnon	dominant fifth decade human stage, fourth decade human stage, systemic lupus erythematosus, guangzhou city prefecture, adult, female, china, homo sapiens, feces	2028-04-11	v3	1 / 22	approved	No
707	amnon	dominant fifth decade human stage, fourth decade human stage, guangzhou city prefecture, adult, female, china, homo sapiens, feces	2028-04-11	v3	1 / 25	approved	No
438	amnon	dominant fifth decade human stage, fourth decade human stage, feces, homo sapiens, jiangsu province, adult, china	2018-12-30	v4	1 / 26	approved	No
131	amnon	negatively correlated with age (30-80 years) ( high in fifth decade human stage fourth decade human stage age compared to human late adulthood stage in homo sapiens feces south korea )	2017-04-16	v4	1 / 39	approved	No
707	amnon	common fifth decade human stage, fourth decade human stage, systemic lupus erythematosus, guangzhou city prefecture, adult, female, china, homo sapiens, feces	2028-04-11	v3	1 / 55	approved	No
707	amnon	common fifth decade human stage, fourth decade human stage, guangzhou city prefecture, adult, female, china, homo sapiens, feces	2028-04-11	v3	1 / 82	approved	No
438	amnon	common fifth decade human stage, fourth decade human stage, feces, homo sapiens, jiangsu province, adult, china	2018-12-30	v4	1 / 115	approved	No
438	amnon	lower in centenarians compared to adults ( high in fifth decade human stage fourth decade human stage 65-79 year-old human stage compared to tenth decade human stage ninth decade human stage age >94 in homo sapiens feces china )	2018-12-30	v4	1 / 203	approved	No
438	amnon	higher in students and soldiers age 19-24 compared to older adults ( high in young adult stage soldiers compared to tenth decade human stage ninth decade human stage fifth decade human stage fourth decade human stage 65-79 year-old human stage adult age >94 in homo sapiens feces china )	2018-12-30	v4	1 / 238	approved	No
438	amnon	high in 6-12 year-old child stage 2-5 year-old child stage age 3-6 age 8-12 child compared to fifth decade human stage fourth decade human stage 65-79 year-old human stage adult in homo sapiens feces china	2018-12-30	v4	1 / 279	approved	No
438	amnon	higher in centenarians compared to adults ( high in tenth decade human stage ninth decade human stage age >94 compared to fifth decade human stage fourth decade human stage 65-79 year-old human stage in homo sapiens feces china )	2018-12-30	v4	1 / 474	approved	No
438	amnon	high in fifth decade human stage fourth decade human stage 65-79 year-old human stage adult compared to 6-12 year-old child stage 2-5 year-old child stage age 3-6 age 8-12 child in homo sapiens feces china	2018-12-30	v4	1 / 486	approved	No
438	amnon	lower in students and soldiers age 19-24 compared to older adults ( high in tenth decade human stage ninth decade human stage fifth decade human stage fourth decade human stage 65-79 year-old human stage age >94 compared to young adult stage soldiers in homo sapiens feces china )	2018-12-30	v4	1 / 617	approved	No

Summary for ontology term: fifth decade human stage

Top positive-associated sequence

Top negative-associated sequence

Top COMMON/DOMINANT/HIGH sequence

Annotations: