Summary for ontology term: gallus gallus

Number of annotations with term: 76

Annotations:

common ontology terms
term enrichment score
TermScore
gallus gallus0.947368
chicken0.947368
caecum0.693396
broiler chicken0.375000
free range chicken0.254902
age 35 days0.240000
cobb broiler chicken0.240000
united kingdom0.205714
male0.130435
farm0.111588
age 30 days0.109890
age 1 week0.104167
age 42 days0.095238
liverpool0.095238
great britain0.095238
age 2 weeks0.095238
ileum0.094340
age 4 weeks0.093023
age 3 weeks0.090909
kingdom of spain0.089069
cecal content0.083333
age 6 weeks0.083333
austria0.076923
cloaca0.074074
LOWER IN caecum0.073171
viet nam0.070588
thailand0.065934
LOWER IN ileum0.063830
age0.055814
campylobacter0.050000
LOWER IN campylobacter0.050000
age 15 - 35 days0.050000
age 3 days0.050000
age 4 days0.050000
age 12 weeks0.050000
age 14-28 days0.050000
LOWER IN high wellfare feed0.050000
high wellfare feed0.050000
LOWER IN cloaca0.048780
age 8 weeks0.048780
standard feed0.048780
LOWER IN standard feed0.048780
old age0.048193
LOWER IN young age0.048193
young age0.047059
LOWER IN old age0.047059
research facility0.043353
LOWER IN control0.036232
control0.036069
LOWER IN viet nam0.025641
LOWER IN infectious bronchitis virus0.025641
LOWER IN bronchitis0.025641
infectious bronchitis virus0.025641
bronchitis0.025641
LOWER IN typhlitis0.025641
LOWER IN disease0.025641
LOWER IN intestinal disease0.025641
typhlitis0.025641
disease0.025641
intestinal disease0.025641
LOWER IN free range chicken0.025641
LOWER IN broiler chicken0.025641
LOWER IN vaccination0.025641
LOWER IN salmune vaccination0.025641
salmune vaccination0.025641
LOWER IN age 30 days0.025641
LOWER IN thailand0.025316
vaccination0.025316
LOWER IN age 1 week0.025316
LOWER IN age0.024096
feces0.020930
china0.013793
united states of america0.008380
Fraction of dbbact annotations with this term covered by the query
TermScore
gallus gallus0.900000
chicken0.900000
caecum0.750000
broiler chicken0.750000
age 35 days0.500000
cobb broiler chicken0.500000
LOWER IN caecum0.500000
age 42 days0.500000
liverpool0.500000
great britain0.500000
LOWER IN viet nam0.500000
campylobacter0.500000
LOWER IN campylobacter0.500000
age 15 - 35 days0.500000
LOWER IN infectious bronchitis virus0.500000
LOWER IN bronchitis0.500000
infectious bronchitis virus0.500000
bronchitis0.500000
age 3 days0.500000
age 2 weeks0.500000
free range chicken0.500000
age 4 days0.500000
age 12 weeks0.500000
LOWER IN typhlitis0.500000
LOWER IN disease0.500000
LOWER IN intestinal disease0.500000
typhlitis0.500000
disease0.500000
intestinal disease0.500000
LOWER IN free range chicken0.500000
LOWER IN broiler chicken0.500000
LOWER IN vaccination0.500000
LOWER IN salmune vaccination0.500000
salmune vaccination0.500000
age 14-28 days0.500000
LOWER IN age 30 days0.500000
LOWER IN high wellfare feed0.500000
high wellfare feed0.500000
age 4 weeks0.400000
LOWER IN cloaca0.333333
viet nam0.333333
LOWER IN thailand0.333333
age 3 weeks0.333333
age 8 weeks0.333333
vaccination0.333333
LOWER IN age 1 week0.333333
age 30 days0.333333
standard feed0.333333
LOWER IN standard feed0.333333
old age0.285714
LOWER IN young age0.285714
age 1 week0.250000
young age0.222222
LOWER IN old age0.222222
thailand0.200000
cecal content0.200000
age 6 weeks0.200000
united kingdom0.181818
ileum0.166667
LOWER IN ileum0.166667
LOWER IN age0.142857
austria0.142857
cloaca0.125000
male0.111111
age0.095238
farm0.066667
kingdom of spain0.052632
LOWER IN control0.025000
control0.024845
research facility0.023622
feces0.010949
china0.007937
united states of america0.004425
Fraction of annotations for the query sequences containing the term
TermScore
gallus gallus1.000000
chicken1.000000
caecum0.644737
farm0.342105
kingdom of spain0.289474
research facility0.263158
broiler chicken0.250000
feces0.236842
united kingdom0.236842
free range chicken0.171053
age 35 days0.157895
cobb broiler chicken0.157895
male0.157895
united states of america0.078947
ileum0.065789
LOWER IN control0.065789
control0.065789
age 1 week0.065789
age 30 days0.065789
cloaca0.052632
age 42 days0.052632
liverpool0.052632
great britain0.052632
cecal content0.052632
china0.052632
age 2 weeks0.052632
age 4 weeks0.052632
age 6 weeks0.052632
age 3 weeks0.052632
austria0.052632
LOWER IN caecum0.039474
LOWER IN ileum0.039474
viet nam0.039474
thailand0.039474
age0.039474
LOWER IN cloaca0.026316
campylobacter0.026316
LOWER IN campylobacter0.026316
young age0.026316
LOWER IN old age0.026316
old age0.026316
LOWER IN young age0.026316
age 15 - 35 days0.026316
age 3 days0.026316
age 4 days0.026316
age 8 weeks0.026316
age 12 weeks0.026316
age 14-28 days0.026316
standard feed0.026316
LOWER IN high wellfare feed0.026316
LOWER IN standard feed0.026316
high wellfare feed0.026316
LOWER IN thailand0.013158
LOWER IN viet nam0.013158
LOWER IN age0.013158
LOWER IN infectious bronchitis virus0.013158
LOWER IN bronchitis0.013158
infectious bronchitis virus0.013158
bronchitis0.013158
LOWER IN typhlitis0.013158
LOWER IN disease0.013158
LOWER IN intestinal disease0.013158
typhlitis0.013158
disease0.013158
intestinal disease0.013158
LOWER IN free range chicken0.013158
LOWER IN broiler chicken0.013158
LOWER IN vaccination0.013158
LOWER IN salmune vaccination0.013158
vaccination0.013158
salmune vaccination0.013158
LOWER IN age 30 days0.013158
LOWER IN age 1 week0.013158
Exp. ID User ID Description Date Region Flag Sequences
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v4No1 / -6
604amnon high in infectious bronchitis virus bronchitis compared to control in chicken gallus gallus cecal content caecum china research facility 2020-04-06v3No1 / -6
127amnonhigh in young (0-3 days) compared to old (28 day) chickens ( high in age young age compared to old age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / -5
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / -4
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / -2
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 1
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 2
495amnondominant gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 4
604amnondominant chicken, gallus gallus, cecal content, caecum, china, research facility2020-04-06v3No1 / 5
622amnondominant caecum, age 42 days, research facility, liverpool, great britain, chicken, gallus gallus2020-05-08v4No1 / 6
568amnondominant gallus gallus, chicken, feces, broiler chicken, viet nam2019-12-08v3No1 / 7
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 7
604amnon high in control compared to infectious bronchitis virus bronchitis in chicken gallus gallus cecal content caecum china research facility 2020-04-06v3No1 / 8
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 8
744amnondominant ileum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v3No1 / 9
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 10
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 11
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 12
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 13
568amnondominant gallus gallus, chicken, feces, broiler chicken, thailand2019-12-08v3No1 / 15
738amnon high in high wellfare feed compared to standard feed in age 1 week caecum united kingdom chicken gallus gallus 2021-01-30v3No1 / 16
379amnondominant gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v4No1 / 17
744amnondominant cloaca, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v3No1 / 18
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 19
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 19
738amnondominant age 30 days, caecum, united kingdom, chicken, gallus gallus2021-01-30v3No1 / 19
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 20
127amnondominant gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 20
744amnondominant research facility, age 35 days, cobb broiler chicken, male, caecum, gallus gallus, chicken2021-02-21v3No1 / 21
622amnon high in ileum compared to caecum in age 42 days research facility liverpool great britain chicken gallus gallus 2020-05-08v4No1 / 21
738amnondominant age 1 week, caecum, united kingdom, chicken, gallus gallus2021-01-30v3No1 / 23
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 25
127amnonhigher in vaccinated chickens ( high in vaccination salmune vaccination compared to control in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 26
738amnon high in high wellfare feed compared to standard feed in age 30 days caecum united kingdom chicken gallus gallus 2021-01-30v3No1 / 28
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 31
744amnoncommon ileum, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v3No1 / 38
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 39
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 40
127amnoncommon gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 43
738amnon high in standard feed compared to high wellfare feed in age 1 week caecum united kingdom chicken gallus gallus 2021-01-30v3No1 / 43
738amnon high in standard feed compared to high wellfare feed in age 30 days caecum united kingdom chicken gallus gallus 2021-01-30v3No1 / 45
744amnon high in ileum compared to cloaca in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v3No1 / 47
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 61
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 61
127amnonhigher in non-vaccinated chickens ( high in control compared to vaccination salmune vaccination in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 64
738amnoncommon age 1 week, caecum, united kingdom, chicken, gallus gallus2021-01-30v3No1 / 64
738amnon high in age 1 week compared to age 30 days in caecum united kingdom chicken gallus gallus 2021-01-30v3No1 / 68
744amnon high in cloaca compared to caecum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v3No1 / 70
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 82
127amnonhigh in old (14-28 days) compared to young (0-3 day) chickens ( high in age old age compared to young age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 90
568amnon high in viet nam compared to thailand in gallus gallus chicken feces broiler chicken 2019-12-08v3No1 / 111
744amnoncommon cloaca, research facility, age 35 days, cobb broiler chicken, male, gallus gallus, chicken2021-02-21v3No1 / 114
744amnon high in ileum compared to caecum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v3No1 / 121
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 126
744amnoncommon research facility, age 35 days, cobb broiler chicken, male, caecum, gallus gallus, chicken2021-02-21v3No1 / 141
379amnoncommon gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v4No1 / 152
604amnoncommon chicken, gallus gallus, cecal content, caecum, china, research facility2020-04-06v3No1 / 177
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 177
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 181
744amnon high in caecum compared to cloaca in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v3No1 / 187
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 191
568amnon high in thailand compared to viet nam in gallus gallus chicken feces broiler chicken 2019-12-08v3No1 / 198
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 202
738amnoncommon age 30 days, caecum, united kingdom, chicken, gallus gallus2021-01-30v3No1 / 202
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 206
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 228
622amnoncommon caecum, age 42 days, research facility, liverpool, great britain, chicken, gallus gallus2020-05-08v4No1 / 236
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 263
568amnoncommon gallus gallus, chicken, feces, broiler chicken, viet nam2019-12-08v3No1 / 264
744amnon high in cloaca compared to ileum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v3No1 / 265
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 282
744amnon high in caecum compared to ileum in research facility age 35 days cobb broiler chicken male gallus gallus chicken 2021-02-21v3No1 / 286
622amnon high in caecum compared to ileum in age 42 days research facility liverpool great britain chicken gallus gallus 2020-05-08v4No1 / 299
568amnoncommon gallus gallus, chicken, feces, broiler chicken, thailand2019-12-08v3No1 / 312
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 404
738amnon high in age 30 days compared to age 1 week in caecum united kingdom chicken gallus gallus 2021-01-30v3No1 / 474

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