Summary for ontology term: gallus gallus

Number of annotations with term: 54

Annotations:

common ontology terms
term enrichment score
TermScore
chicken0.933333
gallus gallus0.933333
caecum0.786517
broiler chicken0.478992
free range chicken0.325000
age 2 weeks0.133333
kingdom of spain0.129412
age 42 days0.129032
liverpool0.129032
great britain0.129032
united kingdom0.126984
age 4 weeks0.125000
farm0.124402
age 6 weeks0.121212
age 3 weeks0.121212
cecal content0.108108
austria0.102564
viet nam0.095238
thailand0.090909
age0.072727
age 3 days0.068966
age 4 days0.068966
age 12 weeks0.068966
age 14-28 days0.068966
campylobacter0.068966
LOWER IN campylobacter0.068966
age 15 - 35 days0.068966
age 8 weeks0.066667
old age0.066667
LOWER IN young age0.066667
young age0.064516
LOWER IN old age0.064516
LOWER IN control0.043668
control0.043431
LOWER IN infectious bronchitis virus0.035714
LOWER IN bronchitis0.035714
infectious bronchitis virus0.035714
bronchitis0.035714
LOWER IN typhlitis0.035714
LOWER IN intestinal disease0.035714
typhlitis0.035714
intestinal disease0.035714
LOWER IN free range chicken0.035714
LOWER IN broiler chicken0.035714
LOWER IN vaccination0.035714
LOWER IN salmune vaccination0.035714
salmune vaccination0.035714
LOWER IN viet nam0.035714
vaccination0.035088
LOWER IN thailand0.035088
LOWER IN disease0.034483
disease0.033333
LOWER IN age0.033333
research facility0.032922
LOWER IN ileum0.031746
ileum0.031746
LOWER IN caecum0.030303
feces0.025316
china0.016736
united states of america0.009569
Fraction of dbbact annotations with this term covered by the query
TermScore
caecum1.000000
chicken0.875000
gallus gallus0.875000
broiler chicken0.750000
age 2 weeks0.666667
LOWER IN infectious bronchitis virus0.500000
LOWER IN bronchitis0.500000
infectious bronchitis virus0.500000
bronchitis0.500000
age 42 days0.500000
liverpool0.500000
great britain0.500000
age 3 days0.500000
free range chicken0.500000
age 4 days0.500000
age 12 weeks0.500000
LOWER IN typhlitis0.500000
LOWER IN intestinal disease0.500000
typhlitis0.500000
intestinal disease0.500000
LOWER IN free range chicken0.500000
LOWER IN broiler chicken0.500000
LOWER IN vaccination0.500000
LOWER IN salmune vaccination0.500000
salmune vaccination0.500000
age 14-28 days0.500000
LOWER IN viet nam0.500000
campylobacter0.500000
LOWER IN campylobacter0.500000
age 15 - 35 days0.500000
age 4 weeks0.400000
age 6 weeks0.333333
age 3 weeks0.333333
age 8 weeks0.333333
viet nam0.333333
old age0.333333
LOWER IN young age0.333333
vaccination0.333333
LOWER IN thailand0.333333
LOWER IN disease0.250000
young age0.250000
LOWER IN old age0.250000
thailand0.250000
cecal content0.200000
disease0.166667
austria0.166667
LOWER IN age0.166667
LOWER IN ileum0.111111
ileum0.111111
united kingdom0.111111
age0.105263
LOWER IN caecum0.083333
kingdom of spain0.076923
farm0.071429
LOWER IN control0.028571
control0.028369
research facility0.018519
feces0.013158
china0.009434
united states of america0.005000
Fraction of annotations for the query sequences containing the term
TermScore
chicken1.000000
gallus gallus1.000000
caecum0.648148
farm0.481481
kingdom of spain0.407407
broiler chicken0.351852
feces0.333333
free range chicken0.240741
research facility0.148148
united kingdom0.148148
united states of america0.111111
control0.092593
LOWER IN control0.092593
cecal content0.074074
china0.074074
age 42 days0.074074
liverpool0.074074
great britain0.074074
age 2 weeks0.074074
age 4 weeks0.074074
age 6 weeks0.074074
age 3 weeks0.074074
austria0.074074
viet nam0.055556
age0.055556
thailand0.055556
age 3 days0.037037
age 4 days0.037037
age 8 weeks0.037037
age 12 weeks0.037037
young age0.037037
LOWER IN old age0.037037
old age0.037037
LOWER IN young age0.037037
age 14-28 days0.037037
campylobacter0.037037
LOWER IN campylobacter0.037037
age 15 - 35 days0.037037
LOWER IN infectious bronchitis virus0.018519
LOWER IN bronchitis0.018519
infectious bronchitis virus0.018519
bronchitis0.018519
LOWER IN ileum0.018519
LOWER IN caecum0.018519
ileum0.018519
LOWER IN typhlitis0.018519
LOWER IN disease0.018519
LOWER IN intestinal disease0.018519
typhlitis0.018519
disease0.018519
intestinal disease0.018519
LOWER IN free range chicken0.018519
LOWER IN broiler chicken0.018519
LOWER IN vaccination0.018519
LOWER IN salmune vaccination0.018519
vaccination0.018519
salmune vaccination0.018519
LOWER IN thailand0.018519
LOWER IN viet nam0.018519
LOWER IN age0.018519
Exp. ID User ID Description Date Region Flag Sequences
604amnon high in infectious bronchitis virus bronchitis compared to control in chicken gallus gallus cecal content caecum china research facility 2020-04-06v3No1 / 2
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v4No1 / 2
127amnonhigh in young (0-3 days) compared to old (28 day) chickens ( high in age young age compared to old age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 3
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 4
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 6
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 9
497amnondominant chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 10
495amnondominant gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 12
604amnondominant chicken, gallus gallus, cecal content, caecum, china, research facility2020-04-06v3No1 / 13
622amnondominant caecum, age 42 days, research facility, liverpool, great britain, chicken, gallus gallus2020-05-08v4No1 / 14
568amnondominant gallus gallus, chicken, feces, broiler chicken, viet nam2019-12-08v3No1 / 15
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 15
604amnon high in control compared to infectious bronchitis virus bronchitis in chicken gallus gallus cecal content caecum china research facility 2020-04-06v3No1 / 16
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 16
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 18
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 19
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 20
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 4 weeks2019-03-04v4No1 / 21
568amnondominant gallus gallus, chicken, feces, broiler chicken, thailand2019-12-08v3No1 / 23
379amnondominant gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v4No1 / 25
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 27
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 27
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 28
127amnondominant gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 28
622amnon high in ileum compared to caecum in age 42 days research facility liverpool great britain chicken gallus gallus 2020-05-08v4No1 / 29
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 33
127amnonhigher in vaccinated chickens ( high in vaccination salmune vaccination compared to control in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 34
497amnoncommon chicken, gallus gallus, broiler chicken, austria, farm, feces, age 2 weeks2019-03-04v4No1 / 39
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 47
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 48
127amnoncommon gallus gallus, chicken, united states of america, caecum, age 14-28 days2017-04-14v4No1 / 51
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 69
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 69
127amnonhigher in non-vaccinated chickens ( high in control compared to vaccination salmune vaccination in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 72
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 90
127amnonhigh in old (14-28 days) compared to young (0-3 day) chickens ( high in age old age compared to young age in gallus gallus chicken united states of america caecum )2017-04-14v4No1 / 98
568amnon high in viet nam compared to thailand in gallus gallus chicken feces broiler chicken 2019-12-08v3No1 / 119
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 134
379amnoncommon gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v4No1 / 160
604amnoncommon chicken, gallus gallus, cecal content, caecum, china, research facility2020-04-06v3No1 / 185
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 185
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 189
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 199
568amnon high in thailand compared to viet nam in gallus gallus chicken feces broiler chicken 2019-12-08v3No1 / 206
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 210
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 214
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 236
622amnoncommon caecum, age 42 days, research facility, liverpool, great britain, chicken, gallus gallus2020-05-08v4No1 / 244
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in gallus gallus chicken feces united kingdom )2018-09-14v4No1 / 271
568amnoncommon gallus gallus, chicken, feces, broiler chicken, viet nam2019-12-08v3No1 / 272
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 290
622amnon high in caecum compared to ileum in age 42 days research facility liverpool great britain chicken gallus gallus 2020-05-08v4No1 / 307
568amnoncommon gallus gallus, chicken, feces, broiler chicken, thailand2019-12-08v3No1 / 320
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 412

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