Summary for ontology term: guangzhou city prefecture

Number of annotations with term: 34

Top positive-associated sequence

Taxonomy Sequence Recall

Top negative-associated sequence

Taxonomy Sequence Recall

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__Bacteroidaceae;g__BacteroidesTACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGTCGTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGCAGTTGATACTGGCGTCCTTGAGTG0.243902
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Rhodospirillales;f__RhodospirillaceaeTGGGGAATATTGGACACTGGGGGCAACCCTGATCCAGCCATGCCGCGTGAGTGATGAAGGCCTTCGGGTTGTAAAGCTCTTTCACACGCGACGATGATGACGGTAGCGTGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTA0.200000
d__Bacteria;p__"Proteobacteria";c__AlphaproteobacteriaTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGAGTGATGAAGGCCTTCGGGTTGTAAAGCTCTTTCACCGGGGACGATGATGACGGTACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTA0.200000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Rikenellaceae";g__AlistipesTACGGAGGATTCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGATAAGTTAGAGGTGAAATCCCGGGGCTTAACTCCGGAACTGCCTCTAATACTGTTAGACTAGAGAG0.200000
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__EnterobacteriaceaeTACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTC0.200000
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Veillonellaceae;g__MegamonasTACGTAGGCGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGGGAGCGCAGGCGGGAAACTAAGCGGATCTTAAAAGTGCGGGGCTCAACCCCGTGATGGGGTCCGAACTGGTTTTCTTGAGTGC0.200000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__Bacteroidaceae;g__BacteroidesTACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGCGACCTTGAGTG0.200000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__Bacteroidaceae;g__BacteroidesTACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGACTGGTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGTCAGTCTTGAGTA0.200000
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Acidaminococcaceae;g__PhascolarctobacteriumTACGTAGGTGGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCATGTAGGCGGCTTAATAAGTCGAGCGTGAAAATGCGGGGCTCAACCCCGTATGGCGCTGGAAACTGTTAGGCTTGAGTGC0.200000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__Bacteroidaceae;g__BacteroidesTACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGACGCTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGGTGTCTTGAGTA0.200000

Annotations:

common ontology terms
Fraction of dbbact annotations with this term covered by the query
TermScore
guangzhou city prefecture0.857143
LOWER IN stroke0.500000
stroke0.500000
LOWER IN ph 5.5-60.500000
LOWER IN ph 6.70.500000
8-year-old human stage0.333333
non-fertilized soil0.333333
saccharum0.333333
sugarcane0.333333
ph 6.70.333333
ph 5.5-60.333333
LOWER IN fertilized soil0.333333
LOWER IN non-fertilized soil0.333333
first trimester0.250000
fifth decade human stage0.250000
systemic lupus erythematosus0.250000
LOWER IN systemic lupus erythematosus0.250000
7-year-old human stage0.250000
fertilized soil0.166667
LOWER IN dental caries0.142857
dental caries0.142857
human early adulthood stage0.125000
fourth decade human stage0.125000
topsoil0.111111
supragingival dental plaque0.076923
vagina0.071429
LOWER IN crohn's disease0.066667
pregnancy0.066667
crohn's disease0.062500
supragingival plaque0.062500
LOWER IN ulcerative colitis0.058824
ulcerative colitis0.055556
depth (soil) 0-20cm0.050000
china0.031088
female0.028571
child0.021277
LOWER IN control0.020408
control0.019900
adult0.014563
soil0.009901
homo sapiens0.009259
feces0.007812
Fraction of annotations for the query sequences containing the term
TermScore
guangzhou city prefecture1.000000
china1.000000
feces0.647059
homo sapiens0.647059
adult0.647059
control0.264706
female0.235294
fourth decade human stage0.176471
fifth decade human stage0.176471
soil0.176471
topsoil0.176471
saccharum0.176471
sugarcane0.176471
depth (soil) 0-20cm0.176471
LOWER IN control0.147059
child0.117647
supragingival plaque0.117647
supragingival dental plaque0.117647
7-year-old human stage0.117647
8-year-old human stage0.117647
ulcerative colitis0.088235
crohn's disease0.088235
stroke0.088235
systemic lupus erythematosus0.088235
non-fertilized soil0.088235
ph 6.70.088235
fertilized soil0.088235
ph 5.5-60.088235
pregnancy0.058824
vagina0.058824
first trimester0.058824
human early adulthood stage0.058824
LOWER IN dental caries0.058824
dental caries0.058824
LOWER IN ulcerative colitis0.029412
LOWER IN crohn's disease0.029412
LOWER IN stroke0.029412
LOWER IN systemic lupus erythematosus0.029412
LOWER IN fertilized soil0.029412
LOWER IN ph 5.5-60.029412
LOWER IN non-fertilized soil0.029412
LOWER IN ph 6.70.029412
Number of experiments associating the term to the sequence
TermScore
guangzhou city prefecture6.000000
china6.000000
LOWER IN control4.000000
control4.000000
feces3.000000
homo sapiens3.000000
adult3.000000
female2.000000
ulcerative colitis1.000000
LOWER IN ulcerative colitis1.000000
crohn's disease1.000000
LOWER IN crohn's disease1.000000
pregnancy1.000000
vagina1.000000
first trimester1.000000
human early adulthood stage1.000000
LOWER IN stroke1.000000
stroke1.000000
fourth decade human stage1.000000
fifth decade human stage1.000000
systemic lupus erythematosus1.000000
LOWER IN systemic lupus erythematosus1.000000
child1.000000
supragingival plaque1.000000
supragingival dental plaque1.000000
7-year-old human stage1.000000
8-year-old human stage1.000000
LOWER IN dental caries1.000000
dental caries1.000000
soil1.000000
topsoil1.000000
non-fertilized soil1.000000
saccharum1.000000
sugarcane1.000000
ph 6.71.000000
depth (soil) 0-20cm1.000000
fertilized soil1.000000
ph 5.5-61.000000
LOWER IN fertilized soil1.000000
LOWER IN ph 5.5-61.000000
LOWER IN non-fertilized soil1.000000
LOWER IN ph 6.71.000000
Exp. ID User ID Description Date Region Sequences Status Flag
616amnondominant in topsoil of PK/NP/NPK/NK fertilized sugarcane field (dominant china, soil, fertilized soil, topsoil, guangzhou city prefecture, saccharum, sugarcane, ph 5.5-6, depth (soil) 0-20cm)2020-04-27v31 / 2approvedNo
976amnoncommon female, pregnancy, vagina, guangzhou city prefecture, first trimester, china, human early adulthood stage2022-12-24v31 / 4approvedNo
779amnon high in ulcerative colitis compared to control in feces homo sapiens adult guangzhou city prefecture china 2021-04-28v41 / 5approvedNo
976amnondominant female, pregnancy, vagina, guangzhou city prefecture, first trimester, china, human early adulthood stage2022-12-24v31 / 6approvedNo
616amnondominant in topsoil of non-fertilized sugarcane field (dominant china, soil, topsoil, guangzhou city prefecture, non-fertilized soil, saccharum, sugarcane, ph 6.7, depth (soil) 0-20cm)2020-04-27v31 / 6approvedNo
779amnon high in crohn's disease compared to control in feces homo sapiens adult guangzhou city prefecture china 2021-04-28v41 / 15approvedNo
707amnon high in systemic lupus erythematosus compared to control in feces homo sapiens female adult guangzhou city prefecture china fourth decade human stage fifth decade human stage 2028-04-11v31 / 15approvedNo
707amnon high in control compared to systemic lupus erythematosus in feces homo sapiens female adult guangzhou city prefecture china fourth decade human stage fifth decade human stage 2028-04-11v31 / 19approvedNo
924amnondominant child, guangzhou city prefecture, supragingival plaque, supragingival dental plaque, china, 7-year-old human stage, 8-year-old human stage2022-07-27v31 / 19approvedNo
333amnonhigh freq. in healthy controls feces (dominant feces, homo sapiens, control, adult, guangzhou city prefecture, china)2018-05-15v41 / 20approvedNo
779amnondominant feces, homo sapiens, adult, guangzhou city prefecture, crohn's disease, china2021-04-28v41 / 21approvedNo
779amnoncommon feces, homo sapiens, adult, guangzhou city prefecture, crohn's disease, china2021-04-28v41 / 22approvedNo
779amnondominant feces, homo sapiens, control, adult, guangzhou city prefecture, china2021-04-28v41 / 22approvedNo
333amnonhigh freq. in stroke patient feces (dominant feces, homo sapiens, stroke, adult, guangzhou city prefecture, china)2018-05-15v41 / 22approvedNo
707amnondominant feces, homo sapiens, female, adult, guangzhou city prefecture, systemic lupus erythematosus, china, fourth decade human stage, fifth decade human stage2028-04-11v31 / 22approvedNo
924amnon high in control compared to dental caries dental caries in child guangzhou city prefecture supragingival plaque supragingival dental plaque china 7-year-old human stage 8-year-old human stage 2022-07-27v31 / 22approvedNo
779amnondominant feces, homo sapiens, ulcerative colitis, adult, guangzhou city prefecture, china2021-04-28v41 / 23approvedNo
779amnoncommon feces, homo sapiens, ulcerative colitis, adult, guangzhou city prefecture, china2021-04-28v41 / 25approvedNo
707amnondominant feces, homo sapiens, female, adult, guangzhou city prefecture, china, fourth decade human stage, fifth decade human stage2028-04-11v31 / 25approvedNo
924amnon high in dental caries dental caries compared to control in child guangzhou city prefecture supragingival plaque supragingival dental plaque china 7-year-old human stage 8-year-old human stage 2022-07-27v31 / 27approvedNo
779amnon high in control compared to ulcerative colitis in feces homo sapiens adult guangzhou city prefecture china 2021-04-28v41 / 28approvedNo
333amnonlower in stroke patients compared to healthy controls ( high in control compared to stroke in feces homo sapiens adult guangzhou city prefecture china )2018-05-15v41 / 30approvedNo
333amnonhigher in stroke patients compared to healthy controls ( high in stroke compared to control in feces homo sapiens adult guangzhou city prefecture china )2018-05-15v41 / 30approvedNo
779amnoncommon feces, homo sapiens, control, adult, guangzhou city prefecture, china2021-04-28v41 / 47approvedNo
333amnoncommon in stroke patient feces (common feces, homo sapiens, stroke, adult, guangzhou city prefecture, china)2018-05-15v41 / 53approvedNo
707amnoncommon feces, homo sapiens, female, adult, guangzhou city prefecture, systemic lupus erythematosus, china, fourth decade human stage, fifth decade human stage2028-04-11v31 / 55approvedNo
333amnoncommon in healthy controls feces (common feces, homo sapiens, control, adult, guangzhou city prefecture, china)2018-05-15v41 / 61approvedNo
707amnoncommon feces, homo sapiens, female, adult, guangzhou city prefecture, china, fourth decade human stage, fifth decade human stage2028-04-11v31 / 82approvedNo
779amnon high in control compared to crohn's disease in feces homo sapiens adult guangzhou city prefecture china 2021-04-28v41 / 127approvedNo
924amnoncommon child, guangzhou city prefecture, supragingival plaque, supragingival dental plaque, china, 7-year-old human stage, 8-year-old human stage2022-07-27v31 / 181approvedNo
616amnon high in non-fertilized soil ph 6.7 compared to fertilized soil ph 5.5-6 in soil topsoil guangzhou city prefecture china saccharum sugarcane depth (soil) 0-20cm 2020-04-27v31 / 504approvedNo
616amnon high in fertilized soil ph 5.5-6 compared to non-fertilized soil ph 6.7 in china soil topsoil guangzhou city prefecture saccharum sugarcane depth (soil) 0-20cm 2020-04-27v31 / 648approvedNo
616amnoncommon in topsoil of non-fertilized sugarcane field (common soil, topsoil, guangzhou city prefecture, non-fertilized soil, china, saccharum, sugarcane, ph 6.7, depth (soil) 0-20cm)2020-04-27v31 / 1277approvedNo
616amnoncommon in topsoil of PK/NP/NPK/NK fertilized sugarcane field (common soil, fertilized soil, topsoil, guangzhou city prefecture, china, saccharum, sugarcane, ph 5.5-6, depth (soil) 0-20cm)2020-04-27v31 / 1710approvedNo

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