Summary for ontology term: pig

Number of annotations with term: 77

Annotations:

common ontology terms
term enrichment score
TermScore
pig0.953975
sus scrofa0.899945
caecum0.330435
canada0.316832
farm0.280156
tonsil0.273504
province of alberta0.266667
state of michigan0.254777
male organism0.231660
male0.207612
age 6 weeks0.190476
ascending colon0.189474
ileum0.137405
salmonellosis0.134831
salmonella enterica subsp. enterica serovar typhimurium0.134831
jiangxi province0.118812
belgium0.113475
united kingdom0.111111
colon0.108696
age 2 months0.106195
LOWER IN caecum0.097166
age 140 days0.094118
duroc pig0.094118
jinhua city prefecture0.094118
jinhua pig0.094118
tibet autonomous region0.089888
nanchang city prefecture0.089888
cecal content0.082474
age 6-10 weeks0.072289
age 12-19 weeks0.072289
age 1-3 weeks0.072289
suckling0.072289
preweaned0.072289
age 2-4 weeks0.072289
weaned0.072289
age 4-7 weeks0.072289
corn and soybean diet0.072289
left colon0.067416
jejunum0.067416
right colon0.065217
age 4 weeks0.065217
duodenum0.056075
china0.055513
LOWER IN salmonellosis0.049383
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.049383
tylosin phosphate0.049383
LOWER IN tylosin phosphate0.049383
age 8 hours0.049383
sus scrofa domesticus0.049383
province of quebec0.048193
nipple0.048193
age 1 month0.047059
LOWER IN jejunum0.047059
LOWER IN left colon0.047059
feces0.046901
state of tennessee0.045977
LOWER IN right colon0.045977
LOWER IN ileum0.044944
research facility0.044155
gastrointestinal system0.043956
vagina0.043011
LOWER IN duodenum0.042105
pregnancy0.040404
zoological garden0.038835
LOWER IN antibiotic0.038835
antibiotic0.038095
female0.036923
italy0.036697
diet0.032000
skin0.029197
united states of america0.025370
LOWER IN ascending colon0.025316
LOWER IN tibetan pig0.025316
LOWER IN tibetan swine0.025316
tibetan pig0.025316
tibetan swine0.025316
LOWER IN sus scrofa0.025316
LOWER IN pig0.025316
intestinal contents0.025316
LOWER IN intestinal contents0.025316
LOWER IN sucram0.025316
sucram0.025316
LOWER IN age 12-19 weeks0.025316
LOWER IN age 6-10 weeks0.025316
LOWER IN age 1-3 weeks0.025316
farm 10.025316
LOWER IN farm 20.025316
farm 20.025316
LOWER IN farm 10.025316
LOWER IN weaned0.025316
LOWER IN corn and soybean diet0.025316
LOWER IN age 4-7 weeks0.025316
LOWER IN preweaned0.025316
LOWER IN suckling0.025316
LOWER IN age 2-4 weeks0.025316
LOWER IN colon0.025000
LOWER IN male0.025000
LOWER IN mucosa0.025000
standard feed0.025000
LOWER IN standard feed0.025000
Fraction of dbbact annotations with this term covered by the query
TermScore
pig0.923077
sus scrofa0.846154
LOWER IN caecum0.750000
canada0.666667
LOWER IN salmonellosis0.500000
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
ascending colon0.500000
caecum0.500000
province of alberta0.500000
salmonellosis0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
LOWER IN ascending colon0.500000
tylosin phosphate0.500000
LOWER IN tylosin phosphate0.500000
LOWER IN tibetan pig0.500000
LOWER IN tibetan swine0.500000
tibetan pig0.500000
tibetan swine0.500000
LOWER IN sus scrofa0.500000
LOWER IN pig0.500000
age 140 days0.500000
duroc pig0.500000
intestinal contents0.500000
LOWER IN intestinal contents0.500000
LOWER IN sucram0.500000
sucram0.500000
age 6-10 weeks0.500000
LOWER IN age 12-19 weeks0.500000
age 12-19 weeks0.500000
LOWER IN age 6-10 weeks0.500000
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
jinhua city prefecture0.500000
jinhua pig0.500000
sus scrofa domesticus0.500000
farm 10.500000
LOWER IN farm 20.500000
farm 20.500000
LOWER IN farm 10.500000
suckling0.500000
preweaned0.500000
age 2-4 weeks0.500000
LOWER IN weaned0.500000
LOWER IN corn and soybean diet0.500000
LOWER IN age 4-7 weeks0.500000
LOWER IN preweaned0.500000
LOWER IN suckling0.500000
LOWER IN age 2-4 weeks0.500000
weaned0.500000
age 4-7 weeks0.500000
corn and soybean diet0.500000
tonsil0.400000
province of quebec0.333333
LOWER IN colon0.333333
colon0.333333
tibet autonomous region0.333333
nanchang city prefecture0.333333
LOWER IN male0.333333
LOWER IN mucosa0.333333
standard feed0.333333
LOWER IN standard feed0.333333
nipple0.333333
LOWER IN age 4 weeks0.333333
male organism0.285714
age 1 month0.250000
LOWER IN female organism0.250000
LOWER IN male organism0.250000
mucosa0.250000
LOWER IN jejunum0.250000
LOWER IN left colon0.250000
left colon0.250000
jejunum0.250000
state of michigan0.250000
jiangxi province0.250000
male0.222222
age 6 weeks0.200000
farm0.200000
state of tennessee0.200000
cecal content0.200000
LOWER IN right colon0.200000
right colon0.200000
age 4 weeks0.200000
ileum0.166667
LOWER IN ileum0.166667
age 2 months0.166667
female organism0.166667
gastrointestinal system0.142857
belgium0.125000
vagina0.125000
LOWER IN duodenum0.111111
duodenum0.100000
pregnancy0.090909
united kingdom0.090909
zoological garden0.076923
LOWER IN antibiotic0.076923
antibiotic0.071429
italy0.062500
LOWER IN female0.045455
diet0.041667
Fraction of annotations for the query sequences containing the term
TermScore
pig0.987013
sus scrofa0.961039
farm0.467532
research facility0.337662
feces0.285714
united states of america0.285714
state of michigan0.259740
caecum0.246753
china0.233766
canada0.207792
tonsil0.207792
male0.194805
male organism0.194805
age 6 weeks0.181818
province of alberta0.181818
control0.155844
united kingdom0.142857
ascending colon0.116883
ileum0.116883
belgium0.103896
salmonellosis0.077922
salmonella enterica subsp. enterica serovar typhimurium0.077922
adult0.077922
age 2 months0.077922
jiangxi province0.077922
colon0.064935
LOWER IN control0.051948
LOWER IN caecum0.051948
cecal content0.051948
tibet autonomous region0.051948
nanchang city prefecture0.051948
age 140 days0.051948
duroc pig0.051948
jinhua city prefecture0.051948
jinhua pig0.051948
female0.038961
right colon0.038961
left colon0.038961
duodenum0.038961
jejunum0.038961
age 6-10 weeks0.038961
age 12-19 weeks0.038961
age 1-3 weeks0.038961
age 4 weeks0.038961
suckling0.038961
preweaned0.038961
age 2-4 weeks0.038961
weaned0.038961
age 4-7 weeks0.038961
corn and soybean diet0.038961
LOWER IN salmonellosis0.025974
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.025974
LOWER IN ileum0.025974
province of quebec0.025974
pregnancy0.025974
zoological garden0.025974
state of tennessee0.025974
age 1 month0.025974
tylosin phosphate0.025974
antibiotic0.025974
LOWER IN tylosin phosphate0.025974
LOWER IN antibiotic0.025974
LOWER IN duodenum0.025974
LOWER IN jejunum0.025974
LOWER IN right colon0.025974
LOWER IN left colon0.025974
diet0.025974
gastrointestinal system0.025974
vagina0.025974
skin0.025974
nipple0.025974
age 8 hours0.025974
sus scrofa domesticus0.025974
italy0.025974
LOWER IN ascending colon0.012987
LOWER IN colon0.012987
LOWER IN tibetan pig0.012987
LOWER IN tibetan swine0.012987
tibetan pig0.012987
tibetan swine0.012987
LOWER IN sus scrofa0.012987
LOWER IN pig0.012987
LOWER IN female0.012987
LOWER IN female organism0.012987
LOWER IN male organism0.012987
LOWER IN male0.012987
female organism0.012987
LOWER IN mucosa0.012987
intestinal contents0.012987
mucosa0.012987
LOWER IN intestinal contents0.012987
LOWER IN sucram0.012987
standard feed0.012987
sucram0.012987
LOWER IN standard feed0.012987
LOWER IN age 12-19 weeks0.012987
LOWER IN age 6-10 weeks0.012987
LOWER IN age 4 weeks0.012987
LOWER IN age 1-3 weeks0.012987
farm 10.012987
Exp. ID User ID Description Date Region Flag Sequences
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / -7
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / -1
521amnonhigh freq. in weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 1
256amnondominant sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 2
700amnon high in caecum compared to colon in control age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 3
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 3
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 3
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 3
424amnondominant sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 4
399amnondominant feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 5
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 5
673amnondominant salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 6
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 6
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 6
673amnondominant control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 7
470amnondominant sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 7
673amnoncommon salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 8
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 9
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 9
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 9
666amnondominant pig, sus scrofa domesticus, italy, feces2020-09-25v3No1 / 9
673amnondominant ascending colon, caecum, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 10
688amnondominant nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v4No1 / 10
700amnondominant belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v3No1 / 11
256amnondominant sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 11
521amnonhigh freq. in pre-weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 12
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 14
673amnondominant control, ascending colon, caecum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 15
314amnondominant caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 15
673amnoncommon control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 18
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 18
700amnon high in control compared to antibiotic tylosin phosphate in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 18
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 22
673amnon high in ileum compared to ascending colon caecum in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 24
688amnon high in male organism male compared to female female organism in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v4No1 / 32
700amnon high in control compared to tylosin phosphate antibiotic in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 33
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 33
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 35
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 42
700amnon high in colon compared to caecum in control age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 52
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 63
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 64
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 72
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 81
673amnoncommon ascending colon, caecum, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 92
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 95
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 97
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 101
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 104
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 106
314amnon high in sus scrofa pig compared to tibetan pig tibetan swine in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 128
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 2 compared to farm 1 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 128
673amnoncommon control, ascending colon, caecum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 147
314amnon high in tibetan pig tibetan swine compared to sus scrofa pig in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 149
700amnoncommon belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v3No1 / 157
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 160
521amnoncommon in pre-weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 161
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 1 compared to farm 2 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 163
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 181
388amnon high in age 6-10 weeks compared to age 12-19 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 202
666amnoncommon pig, sus scrofa domesticus, italy, feces2020-09-25v3No1 / 216
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v4No1 / 219
673amnon high in ascending colon caecum compared to ileum in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 221
388amnon high in age 12-19 weeks compared to age 6-10 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 223
688amnon high in female female organism compared to male organism male in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v4No1 / 232
688amnoncommon nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v4No1 / 271
521amnonhigh freq. in weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 280
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 311
521amnonhigher in pre-weaned pigs compared to weaned older timepoints ( high in suckling preweaned age 2-4 weeks compared to weaned corn and soybean diet age 4-7 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 339
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 372
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 379
314amnoncommon caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 394
424amnoncommon sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 444
470amnoncommon sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 449
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 482
521amnonlower in pre-weaned pigs compared to weaned older timepoints ( high in weaned age 4-7 weeks corn and soybean diet compared to preweaned suckling age 2-4 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 673
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v4No1 / 732

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