Summary for ontology term: pig

Number of annotations with term: 91

Annotations:

common ontology terms
term enrichment score
TermScore
pig0.957332
sus scrofa0.918717
farm0.272727
tonsil0.244275
province of alberta0.235294
state of michigan0.220994
male organism0.198675
age 6 weeks0.173913
ascending colon0.165138
ileum0.150685
caecum0.150495
pregnancy0.132450
female organism0.124138
canada0.123552
salmonellosis0.116505
salmonella enterica subsp. enterica serovar typhimurium0.116505
jiangxi province0.104348
adult organism0.103226
belgium0.103226
united kingdom0.098655
commonwealth of pennsylvania0.098160
age 2 months0.094488
age 140 days0.080808
duroc pig0.080808
jinhua city prefecture0.080808
jinhua pig0.080808
tibet autonomous region0.077670
nanchang city prefecture0.077670
male0.076726
cecal content0.072072
LOWER IN caecum0.070381
research facility0.064251
early pregnancy0.061856
late pregnancy0.061856
state of vermont0.061856
age 6-10 weeks0.061856
age 12-19 weeks0.061856
age 1-3 weeks0.061856
suckling0.061856
preweaned0.061856
age 2-4 weeks0.061856
weaned0.061856
age 4-7 weeks0.061856
corn and soybean diet0.061856
left colon0.058252
right colon0.056604
jejunum0.056604
age 4 weeks0.056604
feces0.055031
colon0.051020
duodenum0.048387
china0.045656
LOWER IN pig0.042553
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.042105
tylosin phosphate0.042105
LOWER IN tylosin phosphate0.042105
age 8 hours0.042105
sus scrofa domesticus0.042105
LOWER IN salmonellosis0.041237
province of quebec0.041237
state of iowa0.041237
age 9 weeks0.041237
nipple0.041237
LOWER IN left colon0.040404
state of tennessee0.039604
age 1 month0.039604
LOWER IN jejunum0.039604
LOWER IN right colon0.039604
united states of america0.039311
LOWER IN ileum0.038462
gastrointestinal system0.038095
LOWER IN duodenum0.036036
vagina0.036036
LOWER IN antibiotic0.034188
antibiotic0.033613
zoological garden0.033058
female0.032877
italy0.031496
diet0.028777
skin0.025478
LOWER IN ascending colon0.021505
LOWER IN multiple pregnancies0.021505
first pregnancy0.021505
LOWER IN first pregnancy0.021505
multiple pregnancies0.021505
LOWER IN tibetan pig0.021505
LOWER IN tibetan swine0.021505
tibetan pig0.021505
tibetan swine0.021505
LOWER IN sus scrofa0.021505
LOWER IN state of vermont0.021505
LOWER IN state of alabama0.021505
LOWER IN wild boar0.021505
LOWER IN late pregnancy0.021505
LOWER IN early pregnancy0.021505
LOWER IN intestinal contents0.021505
LOWER IN sucram0.021505
sucram0.021505
LOWER IN age 12-19 weeks0.021505
LOWER IN age 6-10 weeks0.021505
Fraction of dbbact annotations with this term covered by the query
TermScore
pig0.937500
sus scrofa0.875000
LOWER IN pig0.666667
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
ascending colon0.500000
province of alberta0.500000
salmonellosis0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
LOWER IN ascending colon0.500000
early pregnancy0.500000
late pregnancy0.500000
LOWER IN multiple pregnancies0.500000
first pregnancy0.500000
LOWER IN first pregnancy0.500000
multiple pregnancies0.500000
tylosin phosphate0.500000
LOWER IN tibetan pig0.500000
LOWER IN tibetan swine0.500000
tibetan pig0.500000
tibetan swine0.500000
LOWER IN sus scrofa0.500000
state of vermont0.500000
LOWER IN state of vermont0.500000
LOWER IN state of alabama0.500000
LOWER IN wild boar0.500000
LOWER IN tylosin phosphate0.500000
age 140 days0.500000
duroc pig0.500000
LOWER IN late pregnancy0.500000
LOWER IN early pregnancy0.500000
LOWER IN intestinal contents0.500000
LOWER IN sucram0.500000
sucram0.500000
age 6-10 weeks0.500000
LOWER IN age 12-19 weeks0.500000
age 12-19 weeks0.500000
LOWER IN age 6-10 weeks0.500000
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
sus scrofa domesticus0.500000
jinhua city prefecture0.500000
jinhua pig0.500000
farm 10.500000
LOWER IN farm 20.500000
farm 20.500000
LOWER IN farm 10.500000
suckling0.500000
preweaned0.500000
age 2-4 weeks0.500000
LOWER IN weaned0.500000
LOWER IN corn and soybean diet0.500000
LOWER IN age 4-7 weeks0.500000
LOWER IN preweaned0.500000
LOWER IN suckling0.500000
LOWER IN age 2-4 weeks0.500000
weaned0.500000
age 4-7 weeks0.500000
corn and soybean diet0.500000
tonsil0.400000
LOWER IN salmonellosis0.333333
province of quebec0.333333
tibet autonomous region0.333333
wild boar0.333333
state of iowa0.333333
age 9 weeks0.333333
nanchang city prefecture0.333333
standard feed0.333333
LOWER IN standard feed0.333333
nipple0.333333
LOWER IN age 4 weeks0.333333
male organism0.250000
LOWER IN farm0.250000
state of alabama0.250000
LOWER IN mucosa0.250000
intestinal contents0.250000
LOWER IN left colon0.250000
left colon0.250000
jiangxi province0.250000
state of michigan0.222222
age 6 weeks0.200000
ileum0.200000
farm0.200000
state of tennessee0.200000
age 1 month0.200000
cecal content0.200000
LOWER IN male organism0.200000
mucosa0.200000
LOWER IN jejunum0.200000
LOWER IN right colon0.200000
right colon0.200000
jejunum0.200000
age 4 weeks0.200000
LOWER IN caecum0.176471
pregnancy0.166667
female organism0.166667
age 2 months0.166667
LOWER IN female organism0.166667
LOWER IN ileum0.153846
gastrointestinal system0.142857
Fraction of annotations for the query sequences containing the term
TermScore
pig0.978022
sus scrofa0.967033
farm0.428571
research facility0.395604
feces0.373626
united states of america0.373626
state of michigan0.219780
caecum0.208791
china0.197802
canada0.175824
tonsil0.175824
male0.164835
male organism0.164835
age 6 weeks0.153846
province of alberta0.153846
control0.131868
ileum0.120879
united kingdom0.120879
pregnancy0.109890
ascending colon0.098901
female organism0.098901
commonwealth of pennsylvania0.087912
adult organism0.087912
belgium0.087912
salmonellosis0.065934
salmonella enterica subsp. enterica serovar typhimurium0.065934
adult0.065934
age 2 months0.065934
jiangxi province0.065934
colon0.054945
LOWER IN control0.043956
LOWER IN caecum0.043956
cecal content0.043956
tibet autonomous region0.043956
nanchang city prefecture0.043956
age 140 days0.043956
duroc pig0.043956
jinhua city prefecture0.043956
jinhua pig0.043956
early pregnancy0.032967
late pregnancy0.032967
female0.032967
state of vermont0.032967
right colon0.032967
left colon0.032967
duodenum0.032967
jejunum0.032967
age 6-10 weeks0.032967
age 12-19 weeks0.032967
age 1-3 weeks0.032967
age 4 weeks0.032967
suckling0.032967
preweaned0.032967
age 2-4 weeks0.032967
weaned0.032967
age 4-7 weeks0.032967
corn and soybean diet0.032967
LOWER IN salmonellosis0.021978
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.021978
LOWER IN ileum0.021978
province of quebec0.021978
zoological garden0.021978
state of tennessee0.021978
age 1 month0.021978
tylosin phosphate0.021978
antibiotic0.021978
LOWER IN pig0.021978
LOWER IN antibiotic0.021978
LOWER IN tylosin phosphate0.021978
state of iowa0.021978
age 9 weeks0.021978
LOWER IN duodenum0.021978
LOWER IN jejunum0.021978
LOWER IN right colon0.021978
LOWER IN left colon0.021978
diet0.021978
gastrointestinal system0.021978
vagina0.021978
skin0.021978
nipple0.021978
age 8 hours0.021978
sus scrofa domesticus0.021978
italy0.021978
LOWER IN ascending colon0.010989
LOWER IN multiple pregnancies0.010989
first pregnancy0.010989
LOWER IN first pregnancy0.010989
multiple pregnancies0.010989
LOWER IN colon0.010989
LOWER IN tibetan pig0.010989
LOWER IN tibetan swine0.010989
tibetan pig0.010989
tibetan swine0.010989
LOWER IN sus scrofa0.010989
LOWER IN state of vermont0.010989
LOWER IN farm0.010989
state of alabama0.010989
wild0.010989
wild boar0.010989
LOWER IN state of alabama0.010989
Exp. ID User ID Description Date Region Flag Sequences
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 1
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 6
521amnonhigh freq. in weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 9
700amnon high in caecum compared to colon in control age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 10
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 10
256amnondominant sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 10
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 11
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 11
424amnondominant sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 12
673amnondominant salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 13
399amnondominant feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 13
785amnondominant state of iowa, ileum, research facility, age 9 weeks, sus scrofa, pig2021-05-16v4No1 / 13
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 13
673amnondominant control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 14
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 14
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 14
673amnoncommon salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 15
470amnondominant sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 15
816amnondominant late pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 16
666amnondominant pig, sus scrofa domesticus, italy, feces2020-09-25v3No1 / 16
673amnondominant caecum, ascending colon, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 17
816amnondominant early pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 17
688amnondominant nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v4No1 / 17
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 17
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 17
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 17
700amnondominant belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v3No1 / 18
256amnondominant sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 19
521amnonhigh freq. in pre-weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 20
759amnondominant state of vermont, farm, pig, united states of america, feces, sus scrofa2021-04-04v4No1 / 21
673amnondominant caecum, control, ascending colon, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 22
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 22
314amnondominant caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 23
673amnoncommon control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 25
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 25
700amnon high in control compared to antibiotic tylosin phosphate in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 25
785amnoncommon state of iowa, ileum, research facility, age 9 weeks, sus scrofa, pig2021-05-16v4No1 / 26
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 29
673amnon high in ileum compared to caecum ascending colon in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 31
688amnon high in male organism male compared to female female organism in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v4No1 / 39
700amnon high in control compared to tylosin phosphate antibiotic in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 40
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 41
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 43
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 50
700amnon high in colon compared to caecum in control age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 59
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 71
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 72
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 80
816amnon high in early pregnancy compared to late pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig 2021-07-04v4No1 / 83
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 88
673amnoncommon caecum, ascending colon, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 99
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 103
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 104
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 109
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 112
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 114
314amnon high in sus scrofa pig compared to tibetan pig tibetan swine in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 136
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 2 compared to farm 1 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 136
673amnoncommon caecum, control, ascending colon, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 154
314amnon high in tibetan pig tibetan swine compared to sus scrofa pig in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 157
700amnoncommon belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v3No1 / 164
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 168
521amnoncommon in pre-weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 169
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 1 compared to farm 2 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 171
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 189
388amnon high in age 6-10 weeks compared to age 12-19 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 210
666amnoncommon pig, sus scrofa domesticus, italy, feces2020-09-25v3No1 / 223
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v4No1 / 227
673amnon high in caecum ascending colon compared to ileum in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 228
388amnon high in age 12-19 weeks compared to age 6-10 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 231
688amnon high in female female organism compared to male organism male in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v4No1 / 239
759amnon high in state of vermont farm pig compared to state of alabama wild wild boar in united states of america feces sus scrofa 2021-04-04v4No1 / 258
759amnon high in state of alabama wild wild boar compared to state of vermont farm pig in united states of america feces sus scrofa 2021-04-04v4No1 / 268
688amnoncommon nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v4No1 / 278
521amnonhigh freq. in weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 288
816amnon high in late pregnancy compared to early pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig 2021-07-04v4No1 / 312
816amnoncommon early pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 313
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 319
759amnoncommon state of vermont, farm, pig, united states of america, feces, sus scrofa2021-04-04v4No1 / 328
816amnoncommon late pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v4No1 / 340
521amnonhigher in pre-weaned pigs compared to weaned older timepoints ( high in suckling preweaned age 2-4 weeks compared to weaned corn and soybean diet age 4-7 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 347
816amnonhigher in sows in first pregnancy compared to later pregnancies ( high in first pregnancy compared to multiple pregnancies in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig )2021-07-04v4No1 / 374
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 380
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 387
314amnoncommon caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 402
424amnoncommon sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 452
470amnoncommon sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 457
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 490
521amnonlower in pre-weaned pigs compared to weaned older timepoints ( high in weaned age 4-7 weeks corn and soybean diet compared to preweaned suckling age 2-4 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 681
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v4No1 / 740
816amnonlower in sows in first pregnancy compared to later pregnancies ( high in multiple pregnancies compared to first pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig )2021-07-04v4No1 / 780

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