Summary for ontology term: pig

Number of annotations with term: 91

Top positive-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__TuricibacterTACGTAGGTGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTGATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTCGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATG0.022222
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1;g__Clostridium sensu strictoTACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGATTTTTAAGTGAGATGTGAAATACTCGGGCTTAACCTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAAGGGAATTCCTAG0.022222
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Aeromonadales;f__SuccinivibrionaceaeTACGGAGGGTGCAAGCGTTAATCGGAATAACTGGGCGTAAAGGGCATGCAGGCGGTCGGGCAAGTAGGATGTGAAAGCCCCGGGCTCAACCTGGGAACTGCATTCTAAACTGTCCGACTAGAGTATTGCAGGGGGAGACGGAATTCCAGG0.022222
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__RuminococcaceaeTACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGAGGGCAAGTCAGATGTGAAATCCACGGGCTTAACTCGTGAACTGCATTTGAAACTGTTCTTCTTGAGTATCGGAGAGGCAATCGGAATTCCTAG0.022222
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAAGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCAGGGCCCAACCTTGGCATGCCGTTGATACTGGCGGCCTTGAGTTCACACAAGGAAGGTGGAATTCGTCGT0.022222
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Veillonellaceae;g__MitsuokellaTACGTAGGTGGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGAGCGCAGGCGGGAGATCAAGTCTATCTTAAAAGTGCGGGGCTCAACCCCGTGAGGGGATGGAAACTGGTCTTCTTGAGTGCAGGAGAGGAAAGCGGAATTCCTAGT0.022222
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__VeillonellaceaeTACGTAGGTGGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGAGCGCAGGTGGGAAAGTAAGTCAGTCTTAAAAGTGCGGGGCTCAACCCCGTGAGGGGATTGAAACTACTTTTCTTGAGTGCAGGAGAGGAAAGCGGAATTCCTAGT0.022222
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae;g__TerrisporobacterTACGTAGGGGGCTAGCGTTATCCGGATTTACTGGGCGTAAAGGGTGCGTAGGTGGTCTCTTAAGTCAGGAGTGAAAGGCTACGGCTTAACCGTAGTAAGCTCTTGAAACTGGGAGACTTGAGTGCAGGAGAGGAAAGTGGAATTCCTAGT0.022222
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTACGTAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTACGTAGGCGGTTTCTTAAGCGCAGGGTTTAAGGCAATGGCTCAACCATTGTTCGCCCTGTGAACTGGGAGACTTGAGTGCAGGAGAGGAAAGCGGAATTCCTAGT0.022222
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCATGGCAAGTCTGATGTGAAAACCCAGGGCTCAACCCTGGGACTGCATTGGAAACTGTCAAGCTGGAGTGTCGGAGAGGTAAGCGGAATTCCTAG0.022222

Top negative-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__"Bacteroidetes"TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATTATTAAGTCAGCGGTGAAAGCGTGTGGCTCAACCATACAGTTGCCGTTGATACTGGTAGTCTTGAGTGTAAACGAGGTAGGCGGAATGTGATG0.666667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__BlautiaTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGAGAGGCAAGTCTGATGTGAAAGGCAGGGGCTCAACCCCTGGACTGCATTGGAAACTGTTTTTCTTGAGTGCCGGAGGGGTAAGCGGAATTCCTAG0.666667
d__Bacteria;p__Firmicutes;c__Clostridia;o__ClostridialesTACGTAGGTTGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGAGCTGCAAGTCAGATGTGAAATCCCGGGGCTCAACCCCGGAACTGCATTTGAAACTGTAGCCCTTGAGTATCGGAGAGGCAAGCGGAATTCCTAG0.666667
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__Bacteroidaceae;g__BacteroidesTACGGAAGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGTCATTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGTGACCTTGAGTGCGGCAGAGGCAGGCGGAATTCGTGG0.666667
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__LachnospiraceaeTACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTAAGGCAAGTCAGAAGTGAAAGCTCGGGGCTCAACCCCGGAACTGCTTTTGAAACTGTCCTACTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAG0.666667
d__Bacteria;p__FirmicutesTACGTAGGTGACAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGGCGGGATAGCAAGTCAGTCGTGAAATGCCGAGGCTTAACCTCGGAGCTGCGATTGAAACTGTTATTCTTGAGTATCGGAGAGGAAAGCGGAATTCCCAG0.666667
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__Bacteroidaceae;g__BacteroidesTACGGAAGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGATGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGCGTCCTTGAGTGCGGCAGAGGAAGGCGGAATTCGTGG0.666667
d__BacteriaTACGTAGGGGGCAAGCGTTGTCCGGAATGATTGGGCGTAAAGGGCGCGTAGGCGGCCCGGTAAGTCTGAAGTGAAAGTCCTGGCTTCAAGTTGGGAATTGCTTTGGATACTGTCGGGCTTGAGTGCAGGAGAGGTCAGTGGAATTCCCAG0.666667
d__Bacteria;p__FirmicutesTACGTAGGTGACAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGCGTAGGCGGGATAGCAAGTCAGGAGTGAAATGCCGATGCTCAACATCGGAACTGCTTTTGAAACTGTTATTCTTGAGTATCGGAGAGGAAAGCGGAATTCCCAG0.666667
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Prevotellaceae";g__PrevotellaTACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCTGGGGATTAAGCGTGTTGTGAAATGCCGCGGCTCAACCGTGGCACTGCAGCGCGAACTGGTTCTCTTGAGTGCGCTGAAAGTGGGCGGAATTTGTGG0.666667

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGGCGGTCTTATAAGCGTGACGTGAAATGCAGCGGCTCAACCGTATGATGTGCGTCGCGAACTGTGAGACTTGAGTGTATTCGATGTCAGCGGAATTTGTG0.423729
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Prevotellaceae";g__PrevotellaTACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGCGTGTTGTGAAATGCCGCGGCTCAACCGTGGCACTGCAGCGCGAACTGGTTTTCTTGAGTGCGCGCGACGCAGGCGGAATTCGTGG0.376068
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGCCTGGTAAGCGTGTTGTGAAATGTCGTTGCTCAACAACGTCACTGCAGCGCGAACTGCCGGGCTTGAGTGTGCGGAAAGCGGGCGGAATTTGTGG0.368421
d__Bacteria;p__"Bacteroidetes"TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGACTGTCAAGTCAGTTGTGAAATCCGCGGGCTCAACCTGCGGCCTGCAGTTGAAACTGGCGGTCTTGAGTCCGTTCAGGGATGCTGGAATTCATGG0.350877
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Prevotellaceae";g__PrevotellaTACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGCTTTTAAGCGTGTTGTGAAATGCCGCGGCTCAACCGTGGCACTGCAGCGCGAACTGGAGGCCTTGAGTGCGCGGGAGGTAGGCGGAATTCGTGG0.344828
d__Bacteria;p__"Bacteroidetes"TACGGGGGATGCGAGCGTTATCCGGATTCATTGGGTTTAAAGGGTGCGTAGGCGGCTTTGCAAGTCAGCGGTGAAAGGCCCGGGCTCAACCCGGAAAGTGCCGTTGATACTGTGAGGCTGGAATGCGGATGCTGTGGGAGGAATGAGTGG0.336283
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__StreptococcusTACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTGATAAGTCTGAAGTAAAAGGCTGTGGCTTAACCATAGTACGCTTTGGAAACTGTCAAACTTGAGTGCAGAAGGGGAGAGTGGAATTCCATGT0.330579
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Pasteurellales;f__PasteurellaceaeTACGGAGGGTGCGAGCGTTAATCGGAATGACTGGGCGTAAAGGGCACGCAGGCGGTGACTTAAGTGAGATGTGAAAGCCCCGGGCTTAACCTGGGAATTGCATTTCATACTGGGTCGCTAGAGTATTTTAGGGAGGGGTAGAATTCCACG0.327273
d__BacteriaTACGTAGGTAGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGCCATTTAAGTTCATGGTGAAAGCGTGGGGCTCAACCCCATAAAGCCATGGATACTGGATGGCTGGAGTACTGGAGAGGGTAGTGGAATTCCATGT0.327273
d__Bacteria;p__"Bacteroidetes"TACGGAGGATGCGAGCGTTATCCGGATTCATTGGGTTTAAAGGGTGCGTAGGTGGCTTGTTAAGTCAGCGGTGAAAGTCAGTGGCTCAACCATTGAATTGCCGTTGAAACTGGCGAGCTTGAGTACGTACGGGGCAGGCGGAATGCGTGG0.321429

Annotations:

common ontology terms
term enrichment score
TermScore
pig0.957332
sus scrofa0.918717
farm0.240000
state of michigan0.220994
tonsil0.217687
province of alberta0.210526
age 6 weeks0.160000
male organism0.153061
ascending colon0.152542
ileum0.136929
pregnancy0.120482
caecum0.117375
salmonella enterica subsp. enterica serovar typhimurium0.116505
salmonellosis0.110092
female organism0.104651
jiangxi province0.104348
canada0.101587
belgium0.098160
age 2 months0.094488
united kingdom0.085937
commonwealth of pennsylvania0.085561
duroc pig0.080808
jinhua city prefecture0.080808
jinhua pig0.080808
nanchang city prefecture0.077670
age 140 days0.077670
tibet autonomous region0.072072
male0.071259
LOWER IN caecum0.068768
adult organism0.068085
cecal content0.067227
early pregnancy0.061856
late pregnancy0.061856
state of vermont0.061856
age 6-10 weeks0.061856
age 12-19 weeks0.061856
age 1-3 weeks0.061856
suckling0.061856
preweaned0.061856
age 2-4 weeks0.061856
weaned0.061856
age 4-7 weeks0.061856
corn and soybean diet0.061856
left colon0.058252
right colon0.056604
age 4 weeks0.055046
research facility0.052181
jejunum0.050847
colon0.048544
duodenum0.045113
feces0.044216
LOWER IN pig0.042553
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.042105
tylosin phosphate0.042105
LOWER IN tylosin phosphate0.042105
age 8 hours0.042105
sus scrofa domesticus0.042105
province of quebec0.041237
age 1 month0.041237
state of iowa0.041237
age 9 weeks0.041237
nipple0.041237
LOWER IN salmonellosis0.040404
LOWER IN left colon0.040404
state of tennessee0.039604
LOWER IN right colon0.039604
gastrointestinal system0.038095
LOWER IN ileum0.037736
china0.037520
LOWER IN jejunum0.037383
LOWER IN duodenum0.034783
united states of america0.033854
vagina0.033613
zoological garden0.032000
LOWER IN antibiotic0.032000
antibiotic0.031008
female0.030612
diet0.028777
italy0.027972
skin0.023669
LOWER IN multiple pregnancies0.021505
first pregnancy0.021505
LOWER IN first pregnancy0.021505
multiple pregnancies0.021505
LOWER IN tibetan pig0.021505
LOWER IN tibetan swine0.021505
tibetan pig0.021505
tibetan swine0.021505
LOWER IN sus scrofa0.021505
LOWER IN state of vermont0.021505
LOWER IN state of alabama0.021505
LOWER IN wild boar0.021505
LOWER IN late pregnancy0.021505
LOWER IN early pregnancy0.021505
LOWER IN intestinal contents0.021505
LOWER IN sucram0.021505
sucram0.021505
LOWER IN age 12-19 weeks0.021505
LOWER IN age 6-10 weeks0.021505
LOWER IN age 1-3 weeks0.021505
Fraction of dbbact annotations with this term covered by the query
TermScore
pig0.937500
sus scrofa0.875000
LOWER IN pig0.666667
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
early pregnancy0.500000
late pregnancy0.500000
LOWER IN multiple pregnancies0.500000
first pregnancy0.500000
LOWER IN first pregnancy0.500000
multiple pregnancies0.500000
tylosin phosphate0.500000
LOWER IN tibetan pig0.500000
LOWER IN tibetan swine0.500000
tibetan pig0.500000
tibetan swine0.500000
LOWER IN sus scrofa0.500000
state of vermont0.500000
LOWER IN state of vermont0.500000
LOWER IN state of alabama0.500000
LOWER IN wild boar0.500000
LOWER IN tylosin phosphate0.500000
duroc pig0.500000
LOWER IN late pregnancy0.500000
LOWER IN early pregnancy0.500000
LOWER IN intestinal contents0.500000
LOWER IN sucram0.500000
sucram0.500000
age 6-10 weeks0.500000
LOWER IN age 12-19 weeks0.500000
age 12-19 weeks0.500000
LOWER IN age 6-10 weeks0.500000
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
sus scrofa domesticus0.500000
jinhua city prefecture0.500000
jinhua pig0.500000
farm 10.500000
LOWER IN farm 20.500000
farm 20.500000
LOWER IN farm 10.500000
suckling0.500000
preweaned0.500000
age 2-4 weeks0.500000
LOWER IN weaned0.500000
LOWER IN corn and soybean diet0.500000
LOWER IN age 4-7 weeks0.500000
LOWER IN preweaned0.500000
LOWER IN suckling0.500000
LOWER IN age 2-4 weeks0.500000
weaned0.500000
age 4-7 weeks0.500000
corn and soybean diet0.500000
ascending colon0.333333
province of alberta0.333333
salmonellosis0.333333
LOWER IN ascending colon0.333333
province of quebec0.333333
age 1 month0.333333
wild boar0.333333
state of iowa0.333333
age 9 weeks0.333333
nanchang city prefecture0.333333
age 140 days0.333333
standard feed0.333333
LOWER IN standard feed0.333333
nipple0.333333
LOWER IN age 4 weeks0.333333
tonsil0.285714
LOWER IN salmonellosis0.250000
LOWER IN farm0.250000
state of alabama0.250000
LOWER IN mucosa0.250000
LOWER IN left colon0.250000
left colon0.250000
jiangxi province0.250000
state of michigan0.222222
state of tennessee0.200000
tibet autonomous region0.200000
mucosa0.200000
LOWER IN right colon0.200000
right colon0.200000
age 6 weeks0.166667
farm0.166667
age 2 months0.166667
LOWER IN male organism0.166667
intestinal contents0.166667
age 4 weeks0.166667
ileum0.157895
LOWER IN caecum0.157895
male organism0.142857
cecal content0.142857
gastrointestinal system0.142857
LOWER IN ileum0.133333
pregnancy0.133333
LOWER IN female organism0.125000
LOWER IN jejunum0.125000
female organism0.111111
belgium0.111111
Fraction of annotations for the query sequences containing the term
TermScore
pig0.978022
sus scrofa0.967033
farm0.428571
research facility0.395604
feces0.373626
united states of america0.373626
state of michigan0.219780
caecum0.208791
china0.197802
canada0.175824
tonsil0.175824
male0.164835
male organism0.164835
age 6 weeks0.153846
province of alberta0.153846
control0.131868
ileum0.120879
united kingdom0.120879
pregnancy0.109890
ascending colon0.098901
female organism0.098901
commonwealth of pennsylvania0.087912
adult organism0.087912
belgium0.087912
salmonellosis0.065934
salmonella enterica subsp. enterica serovar typhimurium0.065934
adult0.065934
age 2 months0.065934
jiangxi province0.065934
colon0.054945
LOWER IN control0.043956
LOWER IN caecum0.043956
cecal content0.043956
tibet autonomous region0.043956
nanchang city prefecture0.043956
age 140 days0.043956
duroc pig0.043956
jinhua city prefecture0.043956
jinhua pig0.043956
early pregnancy0.032967
late pregnancy0.032967
female0.032967
state of vermont0.032967
right colon0.032967
left colon0.032967
duodenum0.032967
jejunum0.032967
age 6-10 weeks0.032967
age 12-19 weeks0.032967
age 1-3 weeks0.032967
age 4 weeks0.032967
suckling0.032967
preweaned0.032967
age 2-4 weeks0.032967
weaned0.032967
age 4-7 weeks0.032967
corn and soybean diet0.032967
LOWER IN salmonellosis0.021978
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.021978
LOWER IN ileum0.021978
province of quebec0.021978
zoological garden0.021978
state of tennessee0.021978
age 1 month0.021978
tylosin phosphate0.021978
antibiotic0.021978
LOWER IN pig0.021978
LOWER IN antibiotic0.021978
LOWER IN tylosin phosphate0.021978
state of iowa0.021978
age 9 weeks0.021978
LOWER IN duodenum0.021978
LOWER IN jejunum0.021978
LOWER IN right colon0.021978
LOWER IN left colon0.021978
diet0.021978
gastrointestinal system0.021978
vagina0.021978
skin0.021978
nipple0.021978
age 8 hours0.021978
sus scrofa domesticus0.021978
italy0.021978
LOWER IN ascending colon0.010989
LOWER IN multiple pregnancies0.010989
first pregnancy0.010989
LOWER IN first pregnancy0.010989
multiple pregnancies0.010989
LOWER IN colon0.010989
LOWER IN tibetan pig0.010989
LOWER IN tibetan swine0.010989
tibetan pig0.010989
tibetan swine0.010989
LOWER IN sus scrofa0.010989
LOWER IN state of vermont0.010989
LOWER IN farm0.010989
state of alabama0.010989
wild0.010989
wild boar0.010989
LOWER IN state of alabama0.010989
Number of experiments associating the term to the sequence
TermScore
pig15.000000
sus scrofa14.000000
feces9.000000
farm7.000000
research facility5.000000
united states of america5.000000
caecum4.000000
china4.000000
ileum3.000000
LOWER IN caecum3.000000
control2.000000
male2.000000
male organism2.000000
canada2.000000
LOWER IN control2.000000
LOWER IN ileum2.000000
pregnancy2.000000
female organism2.000000
female2.000000
adult2.000000
LOWER IN pig2.000000
tonsil2.000000
state of michigan2.000000
LOWER IN salmonellosis1.000000
LOWER IN salmonella enterica subsp. enterica serovar typhimurium1.000000
ascending colon1.000000
age 6 weeks1.000000
province of alberta1.000000
salmonellosis1.000000
salmonella enterica subsp. enterica serovar typhimurium1.000000
LOWER IN ascending colon1.000000
early pregnancy1.000000
commonwealth of pennsylvania1.000000
adult organism1.000000
late pregnancy1.000000
province of quebec1.000000
zoological garden1.000000
state of tennessee1.000000
LOWER IN multiple pregnancies1.000000
first pregnancy1.000000
LOWER IN first pregnancy1.000000
multiple pregnancies1.000000
belgium1.000000
age 1 month1.000000
LOWER IN colon1.000000
age 2 months1.000000
colon1.000000
tylosin phosphate1.000000
antibiotic1.000000
cecal content1.000000
tibet autonomous region1.000000
LOWER IN tibetan pig1.000000
LOWER IN tibetan swine1.000000
tibetan pig1.000000
tibetan swine1.000000
LOWER IN sus scrofa1.000000
state of vermont1.000000
LOWER IN state of vermont1.000000
LOWER IN farm1.000000
state of alabama1.000000
wild1.000000
wild boar1.000000
LOWER IN state of alabama1.000000
LOWER IN wild boar1.000000
LOWER IN antibiotic1.000000
LOWER IN tylosin phosphate1.000000
state of iowa1.000000
age 9 weeks1.000000
nanchang city prefecture1.000000
age 140 days1.000000
duroc pig1.000000
LOWER IN female organism1.000000
LOWER IN male organism1.000000
LOWER IN late pregnancy1.000000
LOWER IN early pregnancy1.000000
LOWER IN mucosa1.000000
intestinal contents1.000000
united kingdom1.000000
mucosa1.000000
LOWER IN intestinal contents1.000000
LOWER IN duodenum1.000000
LOWER IN jejunum1.000000
LOWER IN right colon1.000000
LOWER IN left colon1.000000
right colon1.000000
left colon1.000000
duodenum1.000000
jejunum1.000000
diet1.000000
LOWER IN sucram1.000000
gastrointestinal system1.000000
standard feed1.000000
sucram1.000000
LOWER IN standard feed1.000000
age 6-10 weeks1.000000
LOWER IN age 12-19 weeks1.000000
age 12-19 weeks1.000000
LOWER IN age 6-10 weeks1.000000
vagina1.000000
skin1.000000
nipple1.000000
age 1-3 weeks1.000000
LOWER IN age 4 weeks1.000000
age 4 weeks1.000000
LOWER IN age 1-3 weeks1.000000
age 8 hours1.000000
sus scrofa domesticus1.000000
italy1.000000
jinhua city prefecture1.000000
jinhua pig1.000000
farm 11.000000
LOWER IN farm 21.000000
farm 21.000000
LOWER IN farm 11.000000
jiangxi province1.000000
suckling1.000000
preweaned1.000000
age 2-4 weeks1.000000
LOWER IN weaned1.000000
LOWER IN corn and soybean diet1.000000
LOWER IN age 4-7 weeks1.000000
LOWER IN preweaned1.000000
LOWER IN suckling1.000000
LOWER IN age 2-4 weeks1.000000
weaned1.000000
age 4-7 weeks1.000000
corn and soybean diet1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v41 / 1approvedNo
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 6approvedNo
521amnonhigh freq. in weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v31 / 9approvedNo
700amnon high in caecum compared to colon in control age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 10approvedNo
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 10approvedNo
256amnondominant sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v41 / 10approvedNo
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v41 / 11approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v41 / 11approvedNo
424amnondominant sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v41 / 12approvedNo
673amnondominant salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 13approvedNo
399amnondominant feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v41 / 13approvedNo
785amnondominant state of iowa, ileum, research facility, age 9 weeks, sus scrofa, pig2021-05-16v41 / 13approvedNo
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v41 / 13approvedNo
673amnondominant control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 14approvedNo
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v41 / 14approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v41 / 14approvedNo
673amnoncommon salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 15approvedNo
470amnondominant sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v41 / 15approvedNo
816amnondominant late pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v41 / 16approvedNo
666amnondominant pig, sus scrofa domesticus, italy, feces2020-09-25v31 / 16approvedNo
673amnondominant caecum, ascending colon, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 17approvedNo
816amnondominant early pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v41 / 17approvedNo
688amnondominant nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v41 / 17approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v41 / 17approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v41 / 17approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v41 / 17approvedNo
700amnondominant belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v31 / 18approvedNo
256amnondominant sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v41 / 19approvedNo
521amnonhigh freq. in pre-weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v31 / 20approvedNo
759amnondominant state of vermont, farm, pig, united states of america, feces, sus scrofa2021-04-04v41 / 21approvedNo
673amnondominant caecum, control, ascending colon, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 22approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v41 / 22approvedNo
314amnondominant caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v41 / 23approvedNo
673amnoncommon control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 25approvedNo
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v41 / 25approvedNo
700amnon high in control compared to antibiotic tylosin phosphate in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 25approvedNo
785amnoncommon state of iowa, ileum, research facility, age 9 weeks, sus scrofa, pig2021-05-16v41 / 26approvedNo
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v41 / 29approvedNo
673amnon high in ileum compared to caecum ascending colon in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v41 / 31approvedNo
688amnon high in male organism male compared to female female organism in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v41 / 39approvedNo
700amnon high in control compared to tylosin phosphate antibiotic in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 40approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v41 / 41approvedNo
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v41 / 43approvedNo
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v41 / 50approvedNo
700amnon high in colon compared to caecum in control age 2 months belgium research facility sus scrofa pig 2028-04-01v31 / 59approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v41 / 71approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v41 / 72approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v41 / 80approvedNo
816amnon high in early pregnancy compared to late pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig 2021-07-04v41 / 83approvedNo
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v41 / 88approvedNo
673amnoncommon caecum, ascending colon, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 99approvedNo
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v41 / 103approvedNo
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in caecum ascending colon research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v41 / 104approvedNo
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v41 / 109approvedNo
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v41 / 112approvedNo
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v41 / 114approvedNo
314amnon high in sus scrofa pig compared to tibetan pig tibetan swine in caecum cecal content tibet autonomous region farm china 2018-04-10v41 / 136approvedNo
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 2 compared to farm 1 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v41 / 136approvedNo
673amnoncommon caecum, control, ascending colon, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v41 / 154approvedNo
314amnon high in tibetan pig tibetan swine compared to sus scrofa pig in caecum cecal content tibet autonomous region farm china 2018-04-10v41 / 157approvedNo
700amnoncommon belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v31 / 164approvedNo
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v41 / 168approvedNo
521amnoncommon in pre-weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v31 / 169approvedNo
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 1 compared to farm 2 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v41 / 171approvedNo
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v41 / 189approvedNo
388amnon high in age 6-10 weeks compared to age 12-19 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v41 / 210approvedNo
666amnoncommon pig, sus scrofa domesticus, italy, feces2020-09-25v31 / 223approvedNo
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v41 / 227approvedNo
673amnon high in caecum ascending colon compared to ileum in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v41 / 228approvedNo
388amnon high in age 12-19 weeks compared to age 6-10 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v41 / 231approvedNo
688amnon high in female female organism compared to male organism male in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v41 / 239approvedNo
759amnon high in state of vermont farm pig compared to state of alabama wild wild boar in united states of america feces sus scrofa 2021-04-04v41 / 258approvedNo
759amnon high in state of alabama wild wild boar compared to state of vermont farm pig in united states of america feces sus scrofa 2021-04-04v41 / 268approvedNo
688amnoncommon nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v41 / 278approvedNo
521amnonhigh freq. in weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v31 / 288approvedNo
816amnon high in late pregnancy compared to early pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig 2021-07-04v41 / 312approvedNo
816amnoncommon early pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v41 / 313approvedNo
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v41 / 319approvedNo
759amnoncommon state of vermont, farm, pig, united states of america, feces, sus scrofa2021-04-04v41 / 328approvedNo
816amnoncommon late pregnancy, commonwealth of pennsylvania, pregnancy, feces, adult organism, research facility, united states of america, female organism, sus scrofa, pig2021-07-04v41 / 340approvedNo
521amnonhigher in pre-weaned pigs compared to weaned older timepoints ( high in suckling preweaned age 2-4 weeks compared to weaned corn and soybean diet age 4-7 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v31 / 347approvedNo
816amnonhigher in sows in first pregnancy compared to later pregnancies ( high in first pregnancy compared to multiple pregnancies in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig )2021-07-04v41 / 374approvedNo
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v41 / 380approvedNo
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v41 / 387approvedNo
314amnoncommon caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v41 / 402approvedNo
424amnoncommon sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v41 / 452approvedNo
470amnoncommon sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v41 / 457approvedNo
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v41 / 490approvedNo
521amnonlower in pre-weaned pigs compared to weaned older timepoints ( high in weaned age 4-7 weeks corn and soybean diet compared to preweaned suckling age 2-4 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v31 / 681approvedNo
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v41 / 740approvedNo
816amnonlower in sows in first pregnancy compared to later pregnancies ( high in multiple pregnancies compared to first pregnancy in commonwealth of pennsylvania pregnancy feces adult organism research facility united states of america female organism sus scrofa pig )2021-07-04v41 / 780approvedNo

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