dbBact taxonomy

Taxonomy	Sequence	F-Score
d__Bacteria;p__Firmicutes	TGGGGGATATTGCACAATGGGCGAAAGCCTGATGCAGCAACGCCGCGTGAGGGAAGACGGTTTTCGGATTGTAAACCTCTGTTCTAAGTGACGAAGAATGACGGTAGCTTAGGAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT	0.437500
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGCGAGGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAAATGACGGTACCTGCACAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TGGGGGATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAGAATGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA	0.400000
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"	TGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTAGCGTGAAGGAAGACGGCCCTACGGGTTGTAAACTTCTTTTATACGGGAATAAGAACGTCCACGGGTGGATGCGTGCATGTACCGTATGAATAAGCATCGGCTAACT	0.400000
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAGTGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGAAGATGACGGTACCTGAGTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA	0.390244
d__Bacteria;p__"Bacteroidetes"	TGAGGAATATTGGACAATGGATGGAAATCTGATCCAGCCATGCCGCGTGCAGGAAGGCGGTCCTATGGATTGTAAACTGCTTTTGTACGGGAGCAATAATTTCTACGGGATAGGGAGATGAGAGTACCGTACGAATCAGCATCGGCTAAC	0.378378
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae	TGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTTATGAGGGACGAAGGACGTGACGGTACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCG	0.372093
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae	TGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGGGTGAAGAAGTATTTCGGTATGTAAAGCCCTATCAGCAGGGAAGAAGGAAGACGGTACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT	0.363636
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales	TGAGGAATATTGCACAATGGGGGAAACCCTGATGCAGCAACGCCGCGTGAAGGATGAAGGCCCTTGGGTCGTAAACTTCTGTTCTAAGGGAAGATAGTGACGGTACCTTAGGAGCAAGTCCCGGCTAACTACGTGCCAGCAGCCGCGGTA	0.344828
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae	TGGGGAATATTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGAAGAAGGCTTTCGGGTTGTAAACTTCTTTTATTGGGGACGAAACAAATGACGGTACCCGATGAATAAGCTCCGGCTAACTACGTGCCAGCAGCCGCG	0.344828

term enrichment score

Term	Score
rabbit	0.888889
oryctolagus cuniculus	0.615385
hyplus rabbit	0.476190
exclusive breastmilk diet	0.388889
juvenile	0.384615
age 5 weeks	0.280000
age 2 months	0.228571
cecal content	0.217391
soild food supplemented diet	0.214286
solid food diet	0.214286
age 3 weeks	0.162162
french republic	0.116279
commonwealth of pennsylvania	0.086957
antimicrobial agent	0.083333
antibiotics supllemented diet	0.083333
LOWER IN antibiotics supllemented diet	0.083333
ad libitum diet	0.083333
farm1	0.083333
LOWER IN farm2	0.083333
farm2	0.083333
LOWER IN farm1	0.083333
LOWER IN soild food supplemented diet	0.083333
LOWER IN solid food diet	0.083333
LOWER IN exclusive breastmilk diet	0.083333
LOWER IN restricted feed	0.080000
caecum	0.077754
restricted feed	0.076923
LOWER IN age 5 weeks	0.076923
LOWER IN age 3 weeks	0.076923
kingdom of spain	0.074766
LOWER IN	0.074074
LOWER IN normal diet	0.071429
control diet	0.071429
LOWER IN antibiotic	0.051282
LOWER IN control diet	0.051282
antibiotic	0.048780
research facility	0.043716
united states of america	0.013652
feces	0.010127
LOWER IN control	0.009174
control	0.008969

Fraction of dbbact annotations with this term covered by the query

Term	Score
rabbit	0.800000
antimicrobial agent	0.500000
antibiotics supllemented diet	0.500000
LOWER IN antibiotics supllemented diet	0.500000
ad libitum diet	0.500000
farm1	0.500000
LOWER IN farm2	0.500000
farm2	0.500000
LOWER IN farm1	0.500000
hyplus rabbit	0.500000
exclusive breastmilk diet	0.500000
LOWER IN soild food supplemented diet	0.500000
LOWER IN solid food diet	0.500000
soild food supplemented diet	0.500000
solid food diet	0.500000
LOWER IN exclusive breastmilk diet	0.500000
oryctolagus cuniculus	0.444444
LOWER IN restricted feed	0.333333
juvenile	0.333333
restricted feed	0.250000
LOWER IN age 5 weeks	0.250000
age 5 weeks	0.250000
LOWER IN age 3 weeks	0.250000
LOWER IN	0.200000
age 3 weeks	0.200000
age 2 months	0.166667
LOWER IN normal diet	0.166667
cecal content	0.142857
commonwealth of pennsylvania	0.083333
french republic	0.066667
control diet	0.058824
LOWER IN antibiotic	0.058824
LOWER IN control diet	0.058824
antibiotic	0.052632
kingdom of spain	0.041667
caecum	0.040816
research facility	0.022346
united states of america	0.007092
feces	0.005208
LOWER IN control	0.005102
control	0.004975

Fraction of annotations for the query sequences containing the term

Term	Score
research facility	1.000000
oryctolagus cuniculus	1.000000
rabbit	1.000000
caecum	0.818182
french republic	0.454545
cecal content	0.454545
juvenile	0.454545
hyplus rabbit	0.454545
kingdom of spain	0.363636
age 2 months	0.363636
exclusive breastmilk diet	0.318182
age 5 weeks	0.318182
feces	0.181818
united states of america	0.181818
age 3 weeks	0.136364
soild food supplemented diet	0.136364
solid food diet	0.136364
control diet	0.090909
commonwealth of pennsylvania	0.090909
antibiotic	0.045455
antimicrobial agent	0.045455
antibiotics supllemented diet	0.045455
LOWER IN control	0.045455
LOWER IN normal diet	0.045455
control	0.045455
LOWER IN antibiotic	0.045455
LOWER IN	0.045455
LOWER IN antibiotics supllemented diet	0.045455
restricted feed	0.045455
LOWER IN control diet	0.045455
ad libitum diet	0.045455
LOWER IN restricted feed	0.045455
farm1	0.045455
LOWER IN farm2	0.045455
farm2	0.045455
LOWER IN farm1	0.045455
LOWER IN age 5 weeks	0.045455
LOWER IN age 3 weeks	0.045455
LOWER IN soild food supplemented diet	0.045455
LOWER IN solid food diet	0.045455
LOWER IN exclusive breastmilk diet	0.045455

Number of experiments associating the term to the sequence

Term	Score
research facility	4.000000
oryctolagus cuniculus	4.000000
rabbit	4.000000
caecum	2.000000
feces	2.000000
united states of america	2.000000
kingdom of spain	1.000000
age 2 months	1.000000
antibiotic	1.000000
antimicrobial agent	1.000000
antibiotics supllemented diet	1.000000
LOWER IN control	1.000000
LOWER IN normal diet	1.000000
control	1.000000
control diet	1.000000
LOWER IN antibiotic	1.000000
LOWER IN	1.000000
LOWER IN antibiotics supllemented diet	1.000000
restricted feed	1.000000
LOWER IN control diet	1.000000
ad libitum diet	1.000000
LOWER IN restricted feed	1.000000
farm1	1.000000
LOWER IN farm2	1.000000
farm2	1.000000
LOWER IN farm1	1.000000
commonwealth of pennsylvania	1.000000
age 3 weeks	1.000000
LOWER IN age 5 weeks	1.000000
french republic	1.000000
cecal content	1.000000
juvenile	1.000000
hyplus rabbit	1.000000
exclusive breastmilk diet	1.000000
age 5 weeks	1.000000
LOWER IN age 3 weeks	1.000000
LOWER IN soild food supplemented diet	1.000000
LOWER IN solid food diet	1.000000
soild food supplemented diet	1.000000
solid food diet	1.000000
LOWER IN exclusive breastmilk diet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
592	amnon	dominant feces, united states of america, research facility, oryctolagus cuniculus, commonwealth of pennsylvania, rabbit	2020-02-18	v1	1 / 8	approved	No
916	amnon	dominant research facility, caecum, oryctolagus cuniculus, kingdom of spain, age 2 months, rabbit	2022-07-04	v4	1 / 10	approved	No
399	amnon	dominant feces, united states of america, research facility, oryctolagus cuniculus, rabbit	2018-11-16	v4	1 / 14	approved	No
853	amnon	dominant research facility, oryctolagus cuniculus, french republic, cecal content, rabbit, caecum, juvenile, age 5 weeks, hyplus rabbit, soild food supplemented diet, solid food diet	2021-12-20	v3	1 / 21	approved	No
853	amnon	high in age 3 weeks compared to age 5 weeks in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile hyplus rabbit exclusive breastmilk diet	2021-12-18	v3	1 / 23	approved	No
916	amnon	high in restricted feed compared to control diet in research facility caecum oryctolagus cuniculus kingdom of spain age 2 months rabbit	2022-07-04	v4	1 / 24	approved	No
853	amnon	dominant research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, age 3 weeks, juvenile, hyplus rabbit, exclusive breastmilk diet	2021-12-18	v3	1 / 24	approved	No
853	amnon	dominant research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, juvenile, age 5 weeks, hyplus rabbit, exclusive breastmilk diet	2021-12-20	v3	1 / 24	approved	No
916	amnon	high in control diet ad libitum diet compared to restricted feed in research facility caecum oryctolagus cuniculus kingdom of spain age 2 months rabbit	2022-07-04	v4	1 / 27	approved	No
853	amnon	high in exclusive breastmilk diet compared to soild food supplemented diet solid food diet in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile age 5 weeks hyplus rabbit	2021-12-20	v3	1 / 47	approved	No
853	amnon	high in age 5 weeks compared to age 3 weeks in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile hyplus rabbit exclusive breastmilk diet	2021-12-18	v3	1 / 49	approved	No
853	amnon	high in soild food supplemented diet solid food diet compared to exclusive breastmilk diet in research facility oryctolagus cuniculus french republic cecal content rabbit caecum juvenile age 5 weeks hyplus rabbit	2021-12-20	v3	1 / 71	approved	No
853	amnon	common research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, age 3 weeks, juvenile, hyplus rabbit, exclusive breastmilk diet	2021-12-18	v3	1 / 82	approved	No
853	amnon	common research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, juvenile, age 5 weeks, hyplus rabbit, exclusive breastmilk diet	2021-12-20	v3	1 / 96	approved	No
853	amnon	common research facility, oryctolagus cuniculus, french republic, cecal content, rabbit, caecum, juvenile, age 5 weeks, hyplus rabbit, soild food supplemented diet, solid food diet	2021-12-20	v3	1 / 114	approved	No
592	amnon	common feces, united states of america, research facility, oryctolagus cuniculus, commonwealth of pennsylvania, rabbit	2020-02-18	v1	1 / 196	approved	No
916	amnon	high in antibiotic antimicrobial agent antibiotics supllemented diet compared to control normal diet in research facility caecum oryctolagus cuniculus kingdom of spain age 2 months rabbit	2022-07-04	v4	1 / 226	approved	No
916	amnon	high in control control diet compared to antibiotic antibiotics supllemented diet in research facility caecum oryctolagus cuniculus kingdom of spain age 2 months rabbit	2022-07-04	v4	1 / 246	approved	No
916	amnon	common research facility, caecum, oryctolagus cuniculus, kingdom of spain, age 2 months, rabbit	2022-07-04	v4	1 / 361	approved	No
399	amnon	common feces, united states of america, research facility, oryctolagus cuniculus, rabbit	2018-11-16	v4	1 / 577	approved	No
916	amnon	high in farm2 compared to farm1 in research facility caecum oryctolagus cuniculus kingdom of spain age 2 months rabbit	2022-07-04	v4	1 / 1191	approved	No
916	amnon	high in farm1 compared to farm2 in research facility caecum oryctolagus cuniculus kingdom of spain age 2 months rabbit	2022-07-04	v4	1 / 1423	approved	No

Summary for ontology term: rabbit

Top positive-associated sequence

Top negative-associated sequence

Top COMMON/DOMINANT/HIGH sequence

Annotations: