Summary for ontology term: rat

Number of annotations with term: 54

Annotations:

common ontology terms
term enrichment score
TermScore
rat0.956522
rattus norvegicus0.700730
sprague dawley0.674157
rattus0.547264
wistar rat0.289855
czech republic0.270270
research facility0.209524
caecum0.192771
colitis0.187500
ovariectomy0.181818
age 38 weeks0.181818
dahl salt-sensitive0.181818
switzerland0.153846
LOWER IN colitis0.129032
male0.123077
control diet0.117647
israel0.111111
constipation0.100000
tnbs0.100000
low capacity running strain0.100000
salt0.100000
salt rich diet0.100000
feces0.090432
china0.088106
LOWER IN control0.075812
control0.075336
hymenolepis diminuta0.070175
LOWER IN hymenolepis diminuta0.070175
LOWER IN control diet0.065574
female0.051282
LOWER IN constipation0.035714
35 weeks0.035714
LOWER IN 25 weeks0.035714
age 25 weeks0.035714
LOWER IN age 35 weeks0.035714
LOWER IN tnbs0.035714
high capacity running strain0.035714
LOWER IN low capacity running strain0.035714
LOWER IN high capacity running strain0.035714
sedentary0.035714
low physical activity0.035714
LOWER IN exercise0.035714
LOWER IN high physical activity0.035714
exercise0.035714
high physical activity0.035714
LOWER IN sedentary0.035714
LOWER IN low physical activity0.035714
LOWER IN dnbs induced colitis0.035714
dnbs induced colitis0.035714
LOWER IN salt0.035714
LOWER IN salt rich diet0.035714
LOWER IN sulfasalazine0.035714
sulfasalazine0.035714
LOWER IN neomycin0.035714
neomycin0.035714
parasitic helminthiasis infectious disease0.035088
LOWER IN parasitic helminthiasis infectious disease0.035088
fructose diet0.035088
fructose0.035088
LOWER IN fructose diet0.035088
LOWER IN fructose0.035088
LOWER IN ampicillin0.034483
ampicillin0.034483
late time points0.033898
LOWER IN early time points0.033898
LOWER IN age0.033333
united states of america0.031830
early timepoints0.031746
LOWER IN late timepoints0.031746
LOWER IN antibiotic0.031746
antibiotic0.031250
age0.027397
Fraction of dbbact annotations with this term covered by the query
TermScore
rat0.916667
rattus norvegicus0.857143
sprague dawley0.857143
rattus0.833333
hymenolepis diminuta0.666667
LOWER IN hymenolepis diminuta0.666667
wistar rat0.666667
colitis0.600000
constipation0.500000
LOWER IN constipation0.500000
czech republic0.500000
35 weeks0.500000
LOWER IN 25 weeks0.500000
age 25 weeks0.500000
LOWER IN age 35 weeks0.500000
LOWER IN colitis0.500000
LOWER IN tnbs0.500000
tnbs0.500000
ovariectomy0.500000
age 38 weeks0.500000
high capacity running strain0.500000
LOWER IN low capacity running strain0.500000
low capacity running strain0.500000
LOWER IN high capacity running strain0.500000
sedentary0.500000
low physical activity0.500000
LOWER IN exercise0.500000
LOWER IN high physical activity0.500000
exercise0.500000
high physical activity0.500000
LOWER IN sedentary0.500000
LOWER IN low physical activity0.500000
LOWER IN dnbs induced colitis0.500000
dnbs induced colitis0.500000
dahl salt-sensitive0.500000
LOWER IN salt0.500000
LOWER IN salt rich diet0.500000
salt0.500000
salt rich diet0.500000
LOWER IN sulfasalazine0.500000
sulfasalazine0.500000
LOWER IN neomycin0.500000
neomycin0.500000
parasitic helminthiasis infectious disease0.333333
LOWER IN parasitic helminthiasis infectious disease0.333333
fructose diet0.333333
fructose0.333333
LOWER IN fructose diet0.333333
LOWER IN fructose0.333333
control diet0.285714
LOWER IN control diet0.285714
switzerland0.250000
LOWER IN ampicillin0.250000
ampicillin0.250000
late time points0.200000
LOWER IN early time points0.200000
LOWER IN age0.166667
caecum0.142857
research facility0.117021
early timepoints0.111111
LOWER IN late timepoints0.111111
israel0.111111
LOWER IN antibiotic0.111111
male0.105263
antibiotic0.100000
LOWER IN control0.053571
control0.053097
age0.052632
china0.050000
feces0.047872
female0.033333
united states of america0.017143
Fraction of annotations for the query sequences containing the term
TermScore
rat1.000000
research facility1.000000
feces0.814815
rattus norvegicus0.592593
sprague dawley0.555556
rattus0.407407
china0.370370
caecum0.296296
united states of america0.222222
wistar rat0.185185
czech republic0.185185
male0.148148
LOWER IN control0.129630
control0.129630
colitis0.111111
female0.111111
ovariectomy0.111111
age 38 weeks0.111111
dahl salt-sensitive0.111111
israel0.111111
switzerland0.111111
LOWER IN colitis0.074074
control diet0.074074
constipation0.055556
tnbs0.055556
low capacity running strain0.055556
salt0.055556
salt rich diet0.055556
hymenolepis diminuta0.037037
LOWER IN hymenolepis diminuta0.037037
LOWER IN control diet0.037037
LOWER IN constipation0.018519
parasitic helminthiasis infectious disease0.018519
LOWER IN parasitic helminthiasis infectious disease0.018519
late time points0.018519
LOWER IN early time points0.018519
age0.018519
35 weeks0.018519
LOWER IN 25 weeks0.018519
early timepoints0.018519
age 25 weeks0.018519
LOWER IN late timepoints0.018519
LOWER IN age 35 weeks0.018519
LOWER IN age0.018519
LOWER IN tnbs0.018519
high capacity running strain0.018519
LOWER IN low capacity running strain0.018519
LOWER IN high capacity running strain0.018519
sedentary0.018519
low physical activity0.018519
LOWER IN exercise0.018519
LOWER IN high physical activity0.018519
exercise0.018519
high physical activity0.018519
LOWER IN sedentary0.018519
LOWER IN low physical activity0.018519
LOWER IN dnbs induced colitis0.018519
dnbs induced colitis0.018519
LOWER IN salt0.018519
LOWER IN salt rich diet0.018519
LOWER IN sulfasalazine0.018519
sulfasalazine0.018519
fructose diet0.018519
fructose0.018519
LOWER IN fructose diet0.018519
LOWER IN fructose0.018519
LOWER IN antibiotic0.018519
LOWER IN neomycin0.018519
LOWER IN ampicillin0.018519
antibiotic0.018519
neomycin0.018519
ampicillin0.018519
Exp. ID User ID Description Date Sequences
434amnon high in control diet compared to fructose diet fructose in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-201 / 1
186amnonlower in rats chronically infected with helminth ( high in control compared to parasitic helminthiasis infectious disease hymenolepis diminuta in rattus rat sprague dawley research facility caecum united states of america )2017-08-231 / 3
186amnonhigher in rats chronically infected with helminth ( high in parasitic helminthiasis infectious disease hymenolepis diminuta compared to control in rattus rat sprague dawley research facility caecum united states of america )2017-08-231 / 5
300amnon high in exercise high physical activity compared to sedentary low physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-271 / 5
221amnonhigher in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in sulfasalazine compared to colitis in rattus sprague dawley rat feces china research facility )2017-10-251 / 11
187amnonhighfreq rat, rattus, research facility, feces, wistar rat, czech republic2017-08-231 / 13
186amnonhighfreq rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-231 / 14
300amnonhighfreq rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-271 / 15
358amnonhighfreq rattus, rat, research facility, wistar rat, czech republic, feces2018-08-191 / 15
434amnon high in fructose diet fructose compared to control diet in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-201 / 16
300amnon high in sedentary low physical activity compared to exercise high physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-271 / 17
419amnonhighfreq rat, rattus norvegicus, sprague dawley, china, research facility, feces2018-12-021 / 18
419amnonhigh freq. in rats with induced constipation (highfreq rat, rattus norvegicus, sprague dawley, china, research facility, feces, constipation)2018-12-021 / 20
429amnonhighfreq rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-131 / 20
434amnonhighfreq rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-201 / 20
442amnonhighfreq rattus norvegicus, rat, sprague dawley, male, research facility, china, feces2019-01-061 / 21
429amnonhighfreq rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-131 / 21
221amnonhighfreq rattus, sprague dawley, rat, feces, china, research facility2017-10-251 / 21
442amnonhigh freq. in tnbs induced colitis in rat feces (highfreq rattus norvegicus, rat, sprague dawley, male, research facility, china, feces, colitis, tnbs)2019-01-061 / 21
187amnonnegatively correlated with age 25-35 weeks ( high in early timepoints age 25 weeks compared to late timepoints age 35 weeks age in rat rattus research facility feces wistar rat czech republic )2017-08-231 / 23
349amnonhighfreq rattus, rat, feces, china, research facility, sprague dawley, male2018-07-291 / 24
399amnonhighfreq feces, united states of america, research facility, rat, rattus norvegicus2018-11-161 / 27
187amnonpositively correlated with age 25-35 weeks ( high in late time points age 35 weeks compared to early time points 25 weeks in rat rattus research facility feces wistar rat czech republic )2017-08-231 / 33
429amnonhigher in salt sensitive rates fed salt rich diet compared to control diet ( high in salt salt rich diet compared to control diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-131 / 36
419amnon high in constipation compared to control in rat rattus norvegicus sprague dawley china research facility feces 2018-12-021 / 44
221amnonlower in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in colitis compared to sulfasalazine in rattus sprague dawley rat feces china research facility )2017-10-251 / 44
300amnon high in high capacity running strain compared to low capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-271 / 45
429amnonlower in salt sensitive rates fed salt rich diet compared to control diet ( high in control diet compared to salt salt rich diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-131 / 47
442amnonlower in tnbs induced colitis compared to controls ( high in control compared to colitis tnbs in rattus norvegicus rat sprague dawley male research facility china feces )2019-01-061 / 49
221amnonhigher in control compared to tnbs induced colitis in rat feces ( high in control compared to colitis in rattus sprague dawley rat feces china research facility )2017-10-251 / 49
300amnon high in low capacity running strain compared to high capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-271 / 52
442amnonhigher in tnbs induced colitis compared to controls ( high in tnbs colitis compared to control in rattus norvegicus rat sprague dawley male research facility china feces )2019-01-061 / 63
221amnonlower in control compared to tnbs induced colitis in rat feces ( high in colitis compared to control in rattus sprague dawley rat feces china research facility )2017-10-251 / 68
419amnon high in control compared to constipation in rat rattus norvegicus sprague dawley china research facility feces 2018-12-021 / 70
434amnonhigher in antibiotics treated rats compared to controls ( high in antibiotic neomycin ampicillin compared to control in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-201 / 80
358amnonhigher in helminth infected rats compared to controls ( high in hymenolepis diminuta compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-191 / 82
358amnonlower in helminth infected rats compared to controls ( high in control compared to hymenolepis diminuta in rattus rat research facility wistar rat czech republic feces )2018-08-191 / 120
300amnoncommon rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-271 / 150
358amnonhigher in dnbs induced colitis compared to controls in rat feces ( high in colitis dnbs induced colitis compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-191 / 154
399amnoncommon feces, united states of america, research facility, rat, rattus norvegicus2018-11-161 / 184
349amnoncommon rattus, rat, feces, china, research facility, sprague dawley, male2018-07-291 / 235
434amnonlower in antibiotics treated rats compared to controls ( high in control compared to antibiotic neomycin ampicillin in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-201 / 238
434amnoncommon rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-201 / 238
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-131 / 249
419amnoncommon rat, rattus norvegicus, sprague dawley, china, research facility, feces2018-12-021 / 254
419amnoncommon in rats with induced constipation (common rat, rattus norvegicus, sprague dawley, china, research facility, feces, constipation)2018-12-021 / 300
358amnoncommon rattus, rat, research facility, wistar rat, czech republic, feces2018-08-191 / 309
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-131 / 327
187amnoncommon rat, rattus, research facility, feces, wistar rat, czech republic2017-08-231 / 351
442amnoncommon in tnbs induced colitis in rat feces (common rattus norvegicus, rat, sprague dawley, male, research facility, china, feces, colitis, tnbs)2019-01-061 / 360
442amnoncommon rattus norvegicus, rat, sprague dawley, male, research facility, china, feces2019-01-061 / 378
186amnoncommon rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-231 / 407
221amnoncommon rattus, sprague dawley, rat, feces, china, research facility2017-10-251 / 470
358amnonlower in dnbs induced colitis compared to controls in rat feces ( high in control compared to colitis dnbs induced colitis in rattus rat research facility wistar rat czech republic feces )2018-08-191 / 754

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