Summary for ontology term: rat

Number of annotations with term: 71

Annotations:

common ontology terms
term enrichment score
TermScore
rat0.965517
rattus norvegicus0.749491
sprague dawley0.698413
rattus0.451745
male0.365145
caecum0.281525
wistar rat0.232558
czech republic0.188679
research facility0.184957
israel0.159091
colitis0.148148
control diet0.144828
age 38 weeks0.144578
dahl salt-sensitive0.144578
ovariectomy0.134831
switzerland0.106195
LOWER IN colitis0.101266
fructose diet0.101266
fructose0.101266
feces0.083343
tnbs0.077922
constipation0.077922
low capacity running strain0.077922
rattus rattus0.077922
salt0.077922
salt rich diet0.077922
induced type 1 diabetes0.077922
neomycin0.077922
ampicillin0.076433
type i diabetes mellitus0.075000
LOWER IN control diet0.073171
china0.071027
control0.066445
antibiotic0.065217
LOWER IN control0.063028
hymenolepis diminuta0.054054
LOWER IN hymenolepis diminuta0.054054
LOWER IN fructose diet0.053333
LOWER IN fructose0.053333
italy0.050420
female0.029056
35 weeks0.027397
LOWER IN 25 weeks0.027397
age 25 weeks0.027397
LOWER IN age 35 weeks0.027397
LOWER IN tnbs0.027397
LOWER IN constipation0.027397
high capacity running strain0.027397
LOWER IN low capacity running strain0.027397
LOWER IN high capacity running strain0.027397
LOWER IN exercise0.027397
exercise0.027397
LOWER IN dnbs induced colitis0.027397
dnbs induced colitis0.027397
LOWER IN salt0.027397
LOWER IN salt rich diet0.027397
LOWER IN sulfasalazine0.027397
sulfasalazine0.027397
LOWER IN induced type 1 diabetes0.027397
sedentary0.027027
low physical activity0.027027
LOWER IN high physical activity0.027027
LOWER IN sedentary0.027027
LOWER IN low physical activity0.027027
LOWER IN type i diabetes mellitus0.027027
LOWER IN neomycin0.027027
parasitic helminthiasis infectious disease0.026667
LOWER IN parasitic helminthiasis infectious disease0.026667
LOWER IN ampicillin0.026667
high physical activity0.026316
LOWER IN age0.025641
late time points0.025316
LOWER IN early time points0.025316
early timepoints0.025000
LOWER IN late timepoints0.025000
united states of america0.024615
LOWER IN antibiotic0.023810
age0.021739
Fraction of dbbact annotations with this term covered by the query
TermScore
rat0.933333
rattus norvegicus0.888889
rattus0.833333
sprague dawley0.800000
hymenolepis diminuta0.666667
LOWER IN hymenolepis diminuta0.666667
wistar rat0.666667
colitis0.600000
35 weeks0.500000
LOWER IN 25 weeks0.500000
age 25 weeks0.500000
LOWER IN age 35 weeks0.500000
LOWER IN tnbs0.500000
LOWER IN colitis0.500000
tnbs0.500000
constipation0.500000
LOWER IN constipation0.500000
age 38 weeks0.500000
high capacity running strain0.500000
LOWER IN low capacity running strain0.500000
low capacity running strain0.500000
LOWER IN high capacity running strain0.500000
LOWER IN exercise0.500000
exercise0.500000
LOWER IN dnbs induced colitis0.500000
dnbs induced colitis0.500000
rattus rattus0.500000
dahl salt-sensitive0.500000
LOWER IN salt0.500000
LOWER IN salt rich diet0.500000
salt0.500000
salt rich diet0.500000
LOWER IN sulfasalazine0.500000
sulfasalazine0.500000
LOWER IN induced type 1 diabetes0.500000
induced type 1 diabetes0.500000
LOWER IN fructose diet0.500000
LOWER IN fructose0.500000
fructose diet0.500000
fructose0.500000
neomycin0.500000
male0.444444
ampicillin0.400000
caecum0.375000
ovariectomy0.333333
sedentary0.333333
low physical activity0.333333
LOWER IN high physical activity0.333333
LOWER IN sedentary0.333333
LOWER IN low physical activity0.333333
LOWER IN type i diabetes mellitus0.333333
type i diabetes mellitus0.333333
LOWER IN neomycin0.333333
czech republic0.285714
control diet0.272727
LOWER IN control diet0.272727
parasitic helminthiasis infectious disease0.250000
LOWER IN parasitic helminthiasis infectious disease0.250000
LOWER IN ampicillin0.250000
high physical activity0.200000
LOWER IN age0.142857
switzerland0.142857
antibiotic0.142857
israel0.133333
late time points0.125000
LOWER IN early time points0.125000
early timepoints0.111111
LOWER IN late timepoints0.111111
research facility0.102362
LOWER IN antibiotic0.076923
italy0.062500
age0.047619
feces0.043796
LOWER IN control0.043750
control0.043478
china0.039683
female0.017544
united states of america0.013274
Fraction of annotations for the query sequences containing the term
TermScore
rat1.000000
research facility0.957746
feces0.859155
rattus norvegicus0.647887
sprague dawley0.619718
china0.338028
rattus0.309859
male0.309859
caecum0.225352
israel0.197183
united states of america0.169014
control0.140845
wistar rat0.140845
czech republic0.140845
LOWER IN control0.112676
control diet0.098592
colitis0.084507
female0.084507
ovariectomy0.084507
age 38 weeks0.084507
dahl salt-sensitive0.084507
switzerland0.084507
LOWER IN colitis0.056338
fructose diet0.056338
fructose0.056338
tnbs0.042254
constipation0.042254
low capacity running strain0.042254
rattus rattus0.042254
italy0.042254
salt0.042254
salt rich diet0.042254
LOWER IN control diet0.042254
induced type 1 diabetes0.042254
type i diabetes mellitus0.042254
antibiotic0.042254
neomycin0.042254
ampicillin0.042254
hymenolepis diminuta0.028169
LOWER IN hymenolepis diminuta0.028169
LOWER IN fructose diet0.028169
LOWER IN fructose0.028169
parasitic helminthiasis infectious disease0.014085
LOWER IN parasitic helminthiasis infectious disease0.014085
late time points0.014085
LOWER IN early time points0.014085
age0.014085
35 weeks0.014085
LOWER IN 25 weeks0.014085
early timepoints0.014085
age 25 weeks0.014085
LOWER IN late timepoints0.014085
LOWER IN age 35 weeks0.014085
LOWER IN age0.014085
LOWER IN tnbs0.014085
LOWER IN constipation0.014085
high capacity running strain0.014085
LOWER IN low capacity running strain0.014085
LOWER IN high capacity running strain0.014085
sedentary0.014085
low physical activity0.014085
LOWER IN exercise0.014085
LOWER IN high physical activity0.014085
exercise0.014085
high physical activity0.014085
LOWER IN sedentary0.014085
LOWER IN low physical activity0.014085
LOWER IN dnbs induced colitis0.014085
dnbs induced colitis0.014085
LOWER IN salt0.014085
LOWER IN salt rich diet0.014085
LOWER IN sulfasalazine0.014085
sulfasalazine0.014085
LOWER IN type i diabetes mellitus0.014085
LOWER IN induced type 1 diabetes0.014085
LOWER IN antibiotic0.014085
LOWER IN neomycin0.014085
LOWER IN ampicillin0.014085
Exp. ID User ID Description Date Region Flag Sequences
434amnon high in control diet compared to fructose diet fructose in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-20v4No1 / -7
666amnondominant rattus rattus, rat, italy, feces2020-09-25v3No1 / -6
186amnonlower in rats chronically infected with helminth ( high in control compared to parasitic helminthiasis infectious disease hymenolepis diminuta in rattus rat sprague dawley research facility caecum united states of america )2017-08-23v4No1 / -5
186amnonhigher in rats chronically infected with helminth ( high in parasitic helminthiasis infectious disease hymenolepis diminuta compared to control in rattus rat sprague dawley research facility caecum united states of america )2017-08-23v4No1 / -3
300amnon high in exercise high physical activity compared to sedentary low physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-27v4No1 / -3
221amnonhigher in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in sulfasalazine compared to colitis in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 3
187amnondominant rat, rattus, research facility, feces, wistar rat, czech republic2017-08-23v4No1 / 5
186amnondominant rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-23v4No1 / 6
300amnondominant rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-27v4No1 / 7
358amnondominant rattus, rat, research facility, wistar rat, czech republic, feces2018-08-19v4No1 / 7
666amnondominant rattus rattus, rat, italy, feces2020-09-25v3No1 / 7
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v4No1 / 7
584amnondominant male, rattus norvegicus, rat, sprague dawley, research facility, feces, control, china2020-01-31v3No1 / 8
434amnon high in fructose diet fructose compared to control diet in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-20v4No1 / 8
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v4No1 / 8
300amnon high in sedentary low physical activity compared to exercise high physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-27v4No1 / 9
419amnondominant rat, rattus norvegicus, sprague dawley, research facility, feces, china2018-12-02v4No1 / 10
419amnonhigh freq. in rats with induced constipation (dominant rat, rattus norvegicus, sprague dawley, research facility, feces, constipation, china)2018-12-02v4No1 / 12
429amnondominant rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-13v4No1 / 12
434amnondominant rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-20v4No1 / 12
442amnondominant rattus norvegicus, rat, sprague dawley, male, research facility, feces, china2019-01-06v4No1 / 13
442amnonhigh freq. in tnbs induced colitis in rat feces (dominant rattus norvegicus, rat, sprague dawley, male, research facility, feces, tnbs, colitis, china)2019-01-06v4No1 / 13
429amnondominant rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-13v4No1 / 13
221amnondominant rattus, sprague dawley, rat, feces, research facility, china2017-10-25v4No1 / 13
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, control diet2020-02-09v4No1 / 13
187amnonnegatively correlated with age 25-35 weeks ( high in early timepoints age 25 weeks compared to late timepoints age 35 weeks age in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 15
349amnondominant rattus, rat, feces, research facility, sprague dawley, male, china2018-07-29v4No1 / 16
584amnondominant male, rattus norvegicus, rat, sprague dawley, research facility, feces, china, type i diabetes mellitus, induced type 1 diabetes2020-01-31v3No1 / 18
399amnondominant feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 19
584amnon high in induced type 1 diabetes type i diabetes mellitus compared to control in male rattus norvegicus rat sprague dawley research facility feces 2020-01-31v3No1 / 19
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, fructose diet, fructose2020-02-09v4No1 / 19
187amnonpositively correlated with age 25-35 weeks ( high in late time points age 35 weeks compared to early time points 25 weeks in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 25
429amnonhigher in salt sensitive rates fed salt rich diet compared to control diet ( high in salt salt rich diet compared to control diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-13v4No1 / 28
584amnon high in control compared to type i diabetes mellitus induced type 1 diabetes in male rattus norvegicus rat sprague dawley research facility feces 2020-01-31v3No1 / 30
419amnon high in constipation compared to control in rat rattus norvegicus sprague dawley research facility feces china 2018-12-02v4No1 / 36
221amnonlower in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in colitis compared to sulfasalazine in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 36
300amnon high in high capacity running strain compared to low capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-27v4No1 / 37
429amnonlower in salt sensitive rates fed salt rich diet compared to control diet ( high in control diet compared to salt salt rich diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-13v4No1 / 39
442amnonlower in tnbs induced colitis compared to controls ( high in control compared to tnbs colitis in rattus norvegicus rat sprague dawley male research facility feces china )2019-01-06v4No1 / 41
221amnonhigher in control compared to tnbs induced colitis in rat feces ( high in control compared to colitis in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 41
300amnon high in low capacity running strain compared to high capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-27v4No1 / 44
586amnon high in control diet compared to fructose diet fructose in rattus norvegicus rat sprague dawley research facility male israel feces 2020-02-09v4No1 / 53
442amnonhigher in tnbs induced colitis compared to controls ( high in tnbs colitis compared to control in rattus norvegicus rat sprague dawley male research facility feces china )2019-01-06v4No1 / 55
221amnonlower in control compared to tnbs induced colitis in rat feces ( high in colitis compared to control in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 60
419amnon high in control compared to constipation in rat rattus norvegicus sprague dawley research facility feces china 2018-12-02v4No1 / 62
434amnonhigher in antibiotics treated rats compared to controls ( high in antibiotic neomycin ampicillin compared to control in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v4No1 / 72
358amnonhigher in helminth infected rats compared to controls ( high in hymenolepis diminuta compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 74
358amnonlower in helminth infected rats compared to controls ( high in control compared to hymenolepis diminuta in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 112
586amnon high in fructose diet fructose compared to control diet in rattus norvegicus rat sprague dawley research facility male israel feces 2020-02-09v4No1 / 122
300amnoncommon rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-27v4No1 / 142
358amnonhigher in dnbs induced colitis compared to controls in rat feces ( high in dnbs induced colitis colitis compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 146
399amnoncommon feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 176
584amnoncommon male, rattus norvegicus, rat, sprague dawley, research facility, feces, china, type i diabetes mellitus, induced type 1 diabetes2020-01-31v3No1 / 194
584amnoncommon male, rattus norvegicus, rat, sprague dawley, research facility, feces, control, china2020-01-31v3No1 / 213
349amnoncommon rattus, rat, feces, research facility, sprague dawley, male, china2018-07-29v4No1 / 227
434amnonlower in antibiotics treated rats compared to controls ( high in control compared to antibiotic neomycin ampicillin in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v4No1 / 230
434amnoncommon rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-20v4No1 / 230
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, control diet2020-02-09v4No1 / 233
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-13v4No1 / 241
419amnoncommon rat, rattus norvegicus, sprague dawley, research facility, feces, china2018-12-02v4No1 / 246
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, fructose diet, fructose2020-02-09v4No1 / 279
419amnoncommon in rats with induced constipation (common rat, rattus norvegicus, sprague dawley, research facility, feces, constipation, china)2018-12-02v4No1 / 292
358amnoncommon rattus, rat, research facility, wistar rat, czech republic, feces2018-08-19v4No1 / 301
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-13v4No1 / 319
187amnoncommon rat, rattus, research facility, feces, wistar rat, czech republic2017-08-23v4No1 / 343
442amnoncommon in tnbs induced colitis in rat feces (common rattus norvegicus, rat, sprague dawley, male, research facility, feces, tnbs, colitis, china)2019-01-06v4No1 / 352
442amnoncommon rattus norvegicus, rat, sprague dawley, male, research facility, feces, china2019-01-06v4No1 / 370
186amnoncommon rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-23v4No1 / 399
666amnoncommon rattus rattus, rat, italy, feces2020-09-25v3No1 / 399
221amnoncommon rattus, sprague dawley, rat, feces, research facility, china2017-10-25v4No1 / 462
358amnonlower in dnbs induced colitis compared to controls in rat feces ( high in control compared to dnbs induced colitis colitis in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 746

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