Summary for ontology term: rat

Number of annotations with term: 77

Annotations:

common ontology terms
term enrichment score
TermScore
rat0.967742
rattus norvegicus0.771641
sprague dawley0.666667
rattus0.425532
wistar rat0.217391
czech republic0.178571
research facility0.177010
male0.148148
israel0.142857
colitis0.137931
age 38 weeks0.134831
dahl salt-sensitive0.134831
control diet0.127660
ovariectomy0.126316
caecum0.123871
switzerland0.096000
LOWER IN colitis0.094118
fructose diet0.094118
fructose0.094118
feces0.081776
tnbs0.072289
constipation0.072289
low capacity running strain0.072289
rattus rattus0.072289
salt0.072289
salt rich diet0.072289
induced type 1 diabetes0.072289
neomycin0.072289
ampicillin0.071006
city of boston0.069767
type i diabetes mellitus0.067416
LOWER IN control diet0.065934
control0.061974
commonwealth of massachusetts0.061224
new york city0.061224
antibiotic0.061224
LOWER IN control0.058978
china0.058465
state of new york0.056075
hymenolepis diminuta0.050000
LOWER IN hymenolepis diminuta0.050000
LOWER IN fructose diet0.049383
LOWER IN fructose0.049383
italy0.045802
wild0.040268
united states of america0.030994
female0.027088
35 weeks0.025316
LOWER IN 25 weeks0.025316
age 25 weeks0.025316
LOWER IN age 35 weeks0.025316
LOWER IN tnbs0.025316
LOWER IN city of boston0.025316
LOWER IN commonwealth of massachusetts0.025316
LOWER IN state of new york0.025316
LOWER IN new york city0.025316
LOWER IN constipation0.025316
high capacity running strain0.025316
LOWER IN low capacity running strain0.025316
LOWER IN high capacity running strain0.025316
LOWER IN exercise0.025316
exercise0.025316
LOWER IN dnbs induced colitis0.025316
dnbs induced colitis0.025316
LOWER IN salt0.025316
LOWER IN salt rich diet0.025316
LOWER IN sulfasalazine0.025316
sulfasalazine0.025316
LOWER IN induced type 1 diabetes0.025316
sedentary0.025000
low physical activity0.025000
LOWER IN high physical activity0.025000
LOWER IN sedentary0.025000
LOWER IN low physical activity0.025000
LOWER IN neomycin0.025000
parasitic helminthiasis infectious disease0.024691
LOWER IN parasitic helminthiasis infectious disease0.024691
LOWER IN type i diabetes mellitus0.024691
LOWER IN ampicillin0.024691
high physical activity0.024390
LOWER IN age0.023810
LOWER IN research facility0.023810
late time points0.023529
LOWER IN early time points0.023529
early timepoints0.023256
LOWER IN late timepoints0.023256
LOWER IN wild0.022222
LOWER IN antibiotic0.022222
age0.020408
Fraction of dbbact annotations with this term covered by the query
TermScore
rat0.937500
rattus norvegicus0.900000
rattus0.833333
sprague dawley0.800000
hymenolepis diminuta0.666667
LOWER IN hymenolepis diminuta0.666667
wistar rat0.666667
colitis0.600000
35 weeks0.500000
LOWER IN 25 weeks0.500000
age 25 weeks0.500000
LOWER IN age 35 weeks0.500000
LOWER IN tnbs0.500000
LOWER IN colitis0.500000
tnbs0.500000
LOWER IN city of boston0.500000
LOWER IN commonwealth of massachusetts0.500000
LOWER IN state of new york0.500000
LOWER IN new york city0.500000
constipation0.500000
LOWER IN constipation0.500000
age 38 weeks0.500000
high capacity running strain0.500000
LOWER IN low capacity running strain0.500000
low capacity running strain0.500000
LOWER IN high capacity running strain0.500000
LOWER IN exercise0.500000
exercise0.500000
LOWER IN dnbs induced colitis0.500000
dnbs induced colitis0.500000
rattus rattus0.500000
dahl salt-sensitive0.500000
LOWER IN salt0.500000
LOWER IN salt rich diet0.500000
salt0.500000
salt rich diet0.500000
LOWER IN sulfasalazine0.500000
sulfasalazine0.500000
LOWER IN induced type 1 diabetes0.500000
induced type 1 diabetes0.500000
LOWER IN fructose diet0.500000
LOWER IN fructose0.500000
fructose diet0.500000
fructose0.500000
neomycin0.500000
ampicillin0.400000
city of boston0.333333
ovariectomy0.333333
sedentary0.333333
low physical activity0.333333
LOWER IN high physical activity0.333333
LOWER IN sedentary0.333333
LOWER IN low physical activity0.333333
LOWER IN neomycin0.333333
czech republic0.285714
parasitic helminthiasis infectious disease0.250000
LOWER IN parasitic helminthiasis infectious disease0.250000
LOWER IN type i diabetes mellitus0.250000
type i diabetes mellitus0.250000
LOWER IN ampicillin0.250000
control diet0.214286
LOWER IN control diet0.214286
high physical activity0.200000
LOWER IN age0.142857
commonwealth of massachusetts0.142857
new york city0.142857
LOWER IN research facility0.142857
antibiotic0.142857
late time points0.125000
LOWER IN early time points0.125000
switzerland0.125000
israel0.117647
early timepoints0.111111
LOWER IN late timepoints0.111111
male0.100000
state of new york0.100000
research facility0.097902
caecum0.088235
LOWER IN wild0.076923
LOWER IN antibiotic0.076923
italy0.055556
age0.047619
feces0.042904
wild0.041667
LOWER IN control0.041176
control0.040698
china0.032258
united states of america0.016598
female0.016393
Fraction of annotations for the query sequences containing the term
TermScore
rat1.000000
research facility0.922078
feces0.870130
rattus norvegicus0.675325
sprague dawley0.571429
china0.311688
rattus0.285714
male0.285714
united states of america0.233766
caecum0.207792
israel0.181818
control0.129870
wistar rat0.129870
czech republic0.129870
LOWER IN control0.103896
control diet0.090909
colitis0.077922
female0.077922
ovariectomy0.077922
age 38 weeks0.077922
dahl salt-sensitive0.077922
switzerland0.077922
LOWER IN colitis0.051948
fructose diet0.051948
fructose0.051948
tnbs0.038961
city of boston0.038961
commonwealth of massachusetts0.038961
state of new york0.038961
new york city0.038961
wild0.038961
constipation0.038961
low capacity running strain0.038961
rattus rattus0.038961
italy0.038961
salt0.038961
salt rich diet0.038961
LOWER IN control diet0.038961
induced type 1 diabetes0.038961
type i diabetes mellitus0.038961
antibiotic0.038961
neomycin0.038961
ampicillin0.038961
hymenolepis diminuta0.025974
LOWER IN hymenolepis diminuta0.025974
LOWER IN fructose diet0.025974
LOWER IN fructose0.025974
parasitic helminthiasis infectious disease0.012987
LOWER IN parasitic helminthiasis infectious disease0.012987
late time points0.012987
LOWER IN early time points0.012987
age0.012987
35 weeks0.012987
LOWER IN 25 weeks0.012987
early timepoints0.012987
age 25 weeks0.012987
LOWER IN late timepoints0.012987
LOWER IN age 35 weeks0.012987
LOWER IN age0.012987
LOWER IN tnbs0.012987
LOWER IN research facility0.012987
LOWER IN city of boston0.012987
LOWER IN commonwealth of massachusetts0.012987
LOWER IN wild0.012987
LOWER IN state of new york0.012987
LOWER IN new york city0.012987
LOWER IN constipation0.012987
high capacity running strain0.012987
LOWER IN low capacity running strain0.012987
LOWER IN high capacity running strain0.012987
sedentary0.012987
low physical activity0.012987
LOWER IN exercise0.012987
LOWER IN high physical activity0.012987
exercise0.012987
high physical activity0.012987
LOWER IN sedentary0.012987
LOWER IN low physical activity0.012987
LOWER IN dnbs induced colitis0.012987
dnbs induced colitis0.012987
LOWER IN salt0.012987
LOWER IN salt rich diet0.012987
LOWER IN sulfasalazine0.012987
sulfasalazine0.012987
LOWER IN type i diabetes mellitus0.012987
LOWER IN induced type 1 diabetes0.012987
LOWER IN antibiotic0.012987
LOWER IN neomycin0.012987
LOWER IN ampicillin0.012987
Exp. ID User ID Description Date Region Flag Sequences
666amnondominant rattus rattus, rat, italy, feces2020-09-25v3No1 / 1
434amnon high in control diet compared to fructose diet fructose in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-20v4No1 / 1
186amnonlower in rats chronically infected with helminth ( high in control compared to parasitic helminthiasis infectious disease hymenolepis diminuta in rattus rat sprague dawley research facility caecum united states of america )2017-08-23v4No1 / 3
186amnonhigher in rats chronically infected with helminth ( high in parasitic helminthiasis infectious disease hymenolepis diminuta compared to control in rattus rat sprague dawley research facility caecum united states of america )2017-08-23v4No1 / 5
300amnon high in exercise high physical activity compared to sedentary low physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-27v4No1 / 5
221amnonhigher in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in sulfasalazine compared to colitis in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 11
187amnondominant rat, rattus, research facility, feces, wistar rat, czech republic2017-08-23v4No1 / 13
186amnondominant rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-23v4No1 / 14
666amnondominant rattus rattus, rat, italy, feces2020-09-25v3No1 / 14
300amnondominant rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-27v4No1 / 15
358amnondominant rattus, rat, research facility, wistar rat, czech republic, feces2018-08-19v4No1 / 15
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v4No1 / 15
584amnondominant male, rattus norvegicus, rat, sprague dawley, research facility, feces, control, china2020-01-31v3No1 / 16
434amnon high in fructose diet fructose compared to control diet in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-20v4No1 / 16
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v4No1 / 16
759amnondominant state of new york, new york city, wild, feces, united states of america, rattus norvegicus, rat2021-04-06v4No1 / 17
300amnon high in sedentary low physical activity compared to exercise high physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-27v4No1 / 17
419amnondominant rat, rattus norvegicus, sprague dawley, research facility, feces, china2018-12-02v4No1 / 18
419amnonhigh freq. in rats with induced constipation (dominant rat, rattus norvegicus, sprague dawley, research facility, feces, constipation, china)2018-12-02v4No1 / 20
429amnondominant rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-13v4No1 / 20
434amnondominant rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-20v4No1 / 20
442amnondominant rattus norvegicus, rat, sprague dawley, male, research facility, feces, china2019-01-06v4No1 / 21
442amnonhigh freq. in tnbs induced colitis in rat feces (dominant rattus norvegicus, rat, sprague dawley, male, research facility, feces, tnbs, colitis, china)2019-01-06v4No1 / 21
759amnondominant city of boston, commonwealth of massachusetts, research facility, feces, united states of america, rattus norvegicus, rat2021-04-06v4No1 / 21
429amnondominant rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-13v4No1 / 21
221amnondominant rattus, sprague dawley, rat, feces, research facility, china2017-10-25v4No1 / 21
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, control diet2020-02-09v4No1 / 21
187amnonnegatively correlated with age 25-35 weeks ( high in early timepoints age 25 weeks compared to late timepoints age 35 weeks age in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 23
349amnondominant rattus, rat, feces, research facility, sprague dawley, male, china2018-07-29v4No1 / 24
584amnondominant male, rattus norvegicus, rat, sprague dawley, research facility, feces, china, type i diabetes mellitus, induced type 1 diabetes2020-01-31v3No1 / 26
399amnondominant feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 27
584amnon high in induced type 1 diabetes type i diabetes mellitus compared to control in male rattus norvegicus rat sprague dawley research facility feces 2020-01-31v3No1 / 27
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, fructose diet, fructose2020-02-09v4No1 / 27
187amnonpositively correlated with age 25-35 weeks ( high in late time points age 35 weeks compared to early time points 25 weeks in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 33
429amnonhigher in salt sensitive rates fed salt rich diet compared to control diet ( high in salt salt rich diet compared to control diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-13v4No1 / 36
584amnon high in control compared to type i diabetes mellitus induced type 1 diabetes in male rattus norvegicus rat sprague dawley research facility feces 2020-01-31v3No1 / 38
419amnon high in constipation compared to control in rat rattus norvegicus sprague dawley research facility feces china 2018-12-02v4No1 / 44
221amnonlower in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in colitis compared to sulfasalazine in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 44
300amnon high in high capacity running strain compared to low capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-27v4No1 / 45
429amnonlower in salt sensitive rates fed salt rich diet compared to control diet ( high in control diet compared to salt salt rich diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-13v4No1 / 47
442amnonlower in tnbs induced colitis compared to controls ( high in control compared to tnbs colitis in rattus norvegicus rat sprague dawley male research facility feces china )2019-01-06v4No1 / 49
221amnonhigher in control compared to tnbs induced colitis in rat feces ( high in control compared to colitis in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 49
300amnon high in low capacity running strain compared to high capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-27v4No1 / 52
586amnon high in control diet compared to fructose diet fructose in rattus norvegicus rat sprague dawley research facility male israel feces 2020-02-09v4No1 / 61
442amnonhigher in tnbs induced colitis compared to controls ( high in tnbs colitis compared to control in rattus norvegicus rat sprague dawley male research facility feces china )2019-01-06v4No1 / 63
221amnonlower in control compared to tnbs induced colitis in rat feces ( high in colitis compared to control in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 68
419amnon high in control compared to constipation in rat rattus norvegicus sprague dawley research facility feces china 2018-12-02v4No1 / 70
434amnonhigher in antibiotics treated rats compared to controls ( high in antibiotic neomycin ampicillin compared to control in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v4No1 / 80
358amnonhigher in helminth infected rats compared to controls ( high in hymenolepis diminuta compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 82
759amnoncommon state of new york, new york city, wild, feces, united states of america, rattus norvegicus, rat2021-04-06v4No1 / 94
759amnon high in wild new york city state of new york compared to research facility city of boston commonwealth of massachusetts in feces united states of america rattus norvegicus rat 2021-04-06v4No1 / 96
358amnonlower in helminth infected rats compared to controls ( high in control compared to hymenolepis diminuta in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 120
586amnon high in fructose diet fructose compared to control diet in rattus norvegicus rat sprague dawley research facility male israel feces 2020-02-09v4No1 / 130
300amnoncommon rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-27v4No1 / 150
358amnonhigher in dnbs induced colitis compared to controls in rat feces ( high in dnbs induced colitis colitis compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 154
759amnoncommon city of boston, commonwealth of massachusetts, research facility, feces, united states of america, rattus norvegicus, rat2021-04-06v4No1 / 179
399amnoncommon feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 184
584amnoncommon male, rattus norvegicus, rat, sprague dawley, research facility, feces, china, type i diabetes mellitus, induced type 1 diabetes2020-01-31v3No1 / 202
759amnon high in commonwealth of massachusetts city of boston research facility compared to wild state of new york new york city in feces united states of america rattus norvegicus rat 2021-04-06v4No1 / 217
584amnoncommon male, rattus norvegicus, rat, sprague dawley, research facility, feces, control, china2020-01-31v3No1 / 221
349amnoncommon rattus, rat, feces, research facility, sprague dawley, male, china2018-07-29v4No1 / 235
434amnonlower in antibiotics treated rats compared to controls ( high in control compared to antibiotic neomycin ampicillin in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v4No1 / 238
434amnoncommon rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-20v4No1 / 238
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, control diet2020-02-09v4No1 / 241
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-13v4No1 / 249
419amnoncommon rat, rattus norvegicus, sprague dawley, research facility, feces, china2018-12-02v4No1 / 254
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, fructose diet, fructose2020-02-09v4No1 / 287
419amnoncommon in rats with induced constipation (common rat, rattus norvegicus, sprague dawley, research facility, feces, constipation, china)2018-12-02v4No1 / 300
358amnoncommon rattus, rat, research facility, wistar rat, czech republic, feces2018-08-19v4No1 / 309
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-13v4No1 / 327
187amnoncommon rat, rattus, research facility, feces, wistar rat, czech republic2017-08-23v4No1 / 351
442amnoncommon in tnbs induced colitis in rat feces (common rattus norvegicus, rat, sprague dawley, male, research facility, feces, tnbs, colitis, china)2019-01-06v4No1 / 360
442amnoncommon rattus norvegicus, rat, sprague dawley, male, research facility, feces, china2019-01-06v4No1 / 378
666amnoncommon rattus rattus, rat, italy, feces2020-09-25v3No1 / 406
186amnoncommon rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-23v4No1 / 407
221amnoncommon rattus, sprague dawley, rat, feces, research facility, china2017-10-25v4No1 / 470
358amnonlower in dnbs induced colitis compared to controls in rat feces ( high in control compared to dnbs induced colitis colitis in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 754

Problems / suggestions? Please email info AT dbbact DOT org