Summary for ontology term: rat

Number of annotations with term: 68

Annotations:

common ontology terms
term enrichment score
TermScore
rat0.962963
rattus norvegicus0.768267
sprague dawley0.748936
rattus0.466102
male0.374468
caecum0.358209
wistar rat0.240964
research facility0.209677
czech republic0.194175
israel0.176101
control diet0.161538
colitis0.153846
age 38 weeks0.150000
dahl salt-sensitive0.150000
ovariectomy0.139535
switzerland0.115385
LOWER IN colitis0.105263
fructose diet0.105263
fructose0.105263
feces0.086992
neomycin0.082759
tnbs0.081081
constipation0.081081
low capacity running strain0.081081
salt0.081081
salt rich diet0.081081
induced type 1 diabetes0.081081
china0.080537
ampicillin0.079470
LOWER IN control diet0.078947
type i diabetes mellitus0.077922
control0.073069
antibiotic0.069767
LOWER IN control0.069136
hymenolepis diminuta0.056338
LOWER IN hymenolepis diminuta0.056338
LOWER IN fructose diet0.055556
LOWER IN fructose0.055556
female0.036145
35 weeks0.028571
LOWER IN 25 weeks0.028571
age 25 weeks0.028571
LOWER IN age 35 weeks0.028571
LOWER IN tnbs0.028571
LOWER IN constipation0.028571
high capacity running strain0.028571
LOWER IN low capacity running strain0.028571
LOWER IN high capacity running strain0.028571
LOWER IN exercise0.028571
exercise0.028571
LOWER IN dnbs induced colitis0.028571
dnbs induced colitis0.028571
LOWER IN salt0.028571
LOWER IN salt rich diet0.028571
LOWER IN sulfasalazine0.028571
sulfasalazine0.028571
LOWER IN induced type 1 diabetes0.028571
LOWER IN neomycin0.028571
parasitic helminthiasis infectious disease0.028169
LOWER IN parasitic helminthiasis infectious disease0.028169
sedentary0.028169
low physical activity0.028169
LOWER IN high physical activity0.028169
LOWER IN sedentary0.028169
LOWER IN low physical activity0.028169
LOWER IN type i diabetes mellitus0.028169
LOWER IN ampicillin0.027778
high physical activity0.027397
late time points0.027027
LOWER IN early time points0.027027
LOWER IN age0.026667
united states of america0.026549
early timepoints0.025974
LOWER IN late timepoints0.025974
LOWER IN antibiotic0.025641
age0.022472
Fraction of dbbact annotations with this term covered by the query
TermScore
rat0.928571
rattus norvegicus0.888889
sprague dawley0.888889
rattus0.833333
caecum0.750000
hymenolepis diminuta0.666667
LOWER IN hymenolepis diminuta0.666667
wistar rat0.666667
neomycin0.666667
colitis0.600000
35 weeks0.500000
LOWER IN 25 weeks0.500000
age 25 weeks0.500000
LOWER IN age 35 weeks0.500000
LOWER IN tnbs0.500000
LOWER IN colitis0.500000
tnbs0.500000
constipation0.500000
LOWER IN constipation0.500000
age 38 weeks0.500000
high capacity running strain0.500000
LOWER IN low capacity running strain0.500000
low capacity running strain0.500000
LOWER IN high capacity running strain0.500000
LOWER IN exercise0.500000
exercise0.500000
LOWER IN dnbs induced colitis0.500000
dnbs induced colitis0.500000
dahl salt-sensitive0.500000
LOWER IN salt0.500000
LOWER IN salt rich diet0.500000
salt0.500000
salt rich diet0.500000
LOWER IN sulfasalazine0.500000
sulfasalazine0.500000
LOWER IN induced type 1 diabetes0.500000
induced type 1 diabetes0.500000
LOWER IN fructose diet0.500000
LOWER IN fructose0.500000
fructose diet0.500000
fructose0.500000
LOWER IN neomycin0.500000
male0.444444
ampicillin0.400000
control diet0.375000
LOWER IN control diet0.375000
parasitic helminthiasis infectious disease0.333333
LOWER IN parasitic helminthiasis infectious disease0.333333
ovariectomy0.333333
sedentary0.333333
low physical activity0.333333
LOWER IN high physical activity0.333333
LOWER IN sedentary0.333333
LOWER IN low physical activity0.333333
LOWER IN type i diabetes mellitus0.333333
type i diabetes mellitus0.333333
czech republic0.285714
LOWER IN ampicillin0.250000
high physical activity0.200000
late time points0.166667
LOWER IN early time points0.166667
switzerland0.166667
antibiotic0.166667
israel0.153846
LOWER IN age0.142857
research facility0.117117
early timepoints0.111111
LOWER IN late timepoints0.111111
LOWER IN antibiotic0.100000
LOWER IN control0.048951
control0.048611
age0.047619
feces0.045833
china0.045455
female0.022727
united states of america0.014354
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
rat1.000000
feces0.852941
rattus norvegicus0.676471
sprague dawley0.647059
china0.352941
rattus0.323529
male0.323529
caecum0.235294
israel0.205882
united states of america0.176471
control0.147059
wistar rat0.147059
czech republic0.147059
LOWER IN control0.117647
control diet0.102941
colitis0.088235
female0.088235
ovariectomy0.088235
age 38 weeks0.088235
dahl salt-sensitive0.088235
switzerland0.088235
LOWER IN colitis0.058824
fructose diet0.058824
fructose0.058824
tnbs0.044118
constipation0.044118
low capacity running strain0.044118
salt0.044118
salt rich diet0.044118
LOWER IN control diet0.044118
induced type 1 diabetes0.044118
type i diabetes mellitus0.044118
antibiotic0.044118
neomycin0.044118
ampicillin0.044118
hymenolepis diminuta0.029412
LOWER IN hymenolepis diminuta0.029412
LOWER IN fructose diet0.029412
LOWER IN fructose0.029412
parasitic helminthiasis infectious disease0.014706
LOWER IN parasitic helminthiasis infectious disease0.014706
late time points0.014706
LOWER IN early time points0.014706
age0.014706
35 weeks0.014706
LOWER IN 25 weeks0.014706
early timepoints0.014706
age 25 weeks0.014706
LOWER IN late timepoints0.014706
LOWER IN age 35 weeks0.014706
LOWER IN age0.014706
LOWER IN tnbs0.014706
LOWER IN constipation0.014706
high capacity running strain0.014706
LOWER IN low capacity running strain0.014706
LOWER IN high capacity running strain0.014706
sedentary0.014706
low physical activity0.014706
LOWER IN exercise0.014706
LOWER IN high physical activity0.014706
exercise0.014706
high physical activity0.014706
LOWER IN sedentary0.014706
LOWER IN low physical activity0.014706
LOWER IN dnbs induced colitis0.014706
dnbs induced colitis0.014706
LOWER IN salt0.014706
LOWER IN salt rich diet0.014706
LOWER IN sulfasalazine0.014706
sulfasalazine0.014706
LOWER IN type i diabetes mellitus0.014706
LOWER IN induced type 1 diabetes0.014706
LOWER IN antibiotic0.014706
LOWER IN neomycin0.014706
LOWER IN ampicillin0.014706
Exp. ID User ID Description Date Region Flag Sequences
434amnon high in control diet compared to fructose diet fructose in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-20v4No1 / 1
186amnonlower in rats chronically infected with helminth ( high in control compared to parasitic helminthiasis infectious disease hymenolepis diminuta in rattus rat sprague dawley research facility caecum united states of america )2017-08-23v4No1 / 3
186amnonhigher in rats chronically infected with helminth ( high in parasitic helminthiasis infectious disease hymenolepis diminuta compared to control in rattus rat sprague dawley research facility caecum united states of america )2017-08-23v4No1 / 5
300amnon high in exercise high physical activity compared to sedentary low physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-27v4No1 / 5
221amnonhigher in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in sulfasalazine compared to colitis in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 11
187amnondominant rat, rattus, research facility, feces, wistar rat, czech republic2017-08-23v4No1 / 13
186amnondominant rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-23v4No1 / 14
300amnondominant rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-27v4No1 / 15
358amnondominant rattus, rat, research facility, wistar rat, czech republic, feces2018-08-19v4No1 / 15
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v4No1 / 15
584amnondominant male, rattus norvegicus, rat, sprague dawley, research facility, feces, control, china2020-01-31v3No1 / 16
434amnon high in fructose diet fructose compared to control diet in rat rattus norvegicus sprague dawley feces caecum research facility switzerland 2018-12-20v4No1 / 16
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, antibiotic, ampicillin, neomycin2020-02-09v4No1 / 16
300amnon high in sedentary low physical activity compared to exercise high physical activity in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility low capacity running strain 2018-02-27v4No1 / 17
419amnondominant rat, rattus norvegicus, sprague dawley, research facility, feces, china2018-12-02v4No1 / 18
419amnonhigh freq. in rats with induced constipation (dominant rat, rattus norvegicus, sprague dawley, research facility, feces, constipation, china)2018-12-02v4No1 / 20
429amnondominant rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-13v4No1 / 20
434amnondominant rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-20v4No1 / 20
442amnondominant rattus norvegicus, rat, sprague dawley, male, research facility, feces, china2019-01-06v4No1 / 21
442amnonhigh freq. in tnbs induced colitis in rat feces (dominant rattus norvegicus, rat, sprague dawley, male, research facility, feces, tnbs, colitis, china)2019-01-06v4No1 / 21
429amnondominant rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-13v4No1 / 21
221amnondominant rattus, sprague dawley, rat, feces, research facility, china2017-10-25v4No1 / 21
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, control diet2020-02-09v4No1 / 21
187amnonnegatively correlated with age 25-35 weeks ( high in early timepoints age 25 weeks compared to late timepoints age 35 weeks age in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 23
349amnondominant rattus, rat, feces, research facility, sprague dawley, male, china2018-07-29v4No1 / 24
584amnondominant male, rattus norvegicus, rat, sprague dawley, research facility, feces, china, type i diabetes mellitus, induced type 1 diabetes2020-01-31v3No1 / 26
399amnondominant feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 27
584amnon high in induced type 1 diabetes type i diabetes mellitus compared to control in male rattus norvegicus rat sprague dawley research facility feces 2020-01-31v3No1 / 27
586amnondominant rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, fructose diet, fructose2020-02-09v4No1 / 27
187amnonpositively correlated with age 25-35 weeks ( high in late time points age 35 weeks compared to early time points 25 weeks in rat rattus research facility feces wistar rat czech republic )2017-08-23v4No1 / 33
429amnonhigher in salt sensitive rates fed salt rich diet compared to control diet ( high in salt salt rich diet compared to control diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-13v4No1 / 36
584amnon high in control compared to type i diabetes mellitus induced type 1 diabetes in male rattus norvegicus rat sprague dawley research facility feces 2020-01-31v3No1 / 38
419amnon high in constipation compared to control in rat rattus norvegicus sprague dawley research facility feces china 2018-12-02v4No1 / 44
221amnonlower in induced colitis treated with Sulfasalazine compared to no Sulfasalazine in rat feces ( high in colitis compared to sulfasalazine in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 44
300amnon high in high capacity running strain compared to low capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-27v4No1 / 45
429amnonlower in salt sensitive rates fed salt rich diet compared to control diet ( high in control diet compared to salt salt rich diet in rat rattus norvegicus dahl salt-sensitive feces israel research facility )2018-12-13v4No1 / 47
442amnonlower in tnbs induced colitis compared to controls ( high in control compared to tnbs colitis in rattus norvegicus rat sprague dawley male research facility feces china )2019-01-06v4No1 / 49
221amnonhigher in control compared to tnbs induced colitis in rat feces ( high in control compared to colitis in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 49
300amnon high in low capacity running strain compared to high capacity running strain in rat rattus norvegicus caecum female ovariectomy age 38 weeks united states of america research facility 2018-02-27v4No1 / 52
586amnon high in control diet compared to fructose diet fructose in rattus norvegicus rat sprague dawley research facility male israel feces 2020-02-09v4No1 / 61
442amnonhigher in tnbs induced colitis compared to controls ( high in tnbs colitis compared to control in rattus norvegicus rat sprague dawley male research facility feces china )2019-01-06v4No1 / 63
221amnonlower in control compared to tnbs induced colitis in rat feces ( high in colitis compared to control in rattus sprague dawley rat feces research facility china )2017-10-25v4No1 / 68
419amnon high in control compared to constipation in rat rattus norvegicus sprague dawley research facility feces china 2018-12-02v4No1 / 70
434amnonhigher in antibiotics treated rats compared to controls ( high in antibiotic neomycin ampicillin compared to control in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v4No1 / 80
358amnonhigher in helminth infected rats compared to controls ( high in hymenolepis diminuta compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 82
358amnonlower in helminth infected rats compared to controls ( high in control compared to hymenolepis diminuta in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 120
586amnon high in fructose diet fructose compared to control diet in rattus norvegicus rat sprague dawley research facility male israel feces 2020-02-09v4No1 / 130
300amnoncommon rat, rattus norvegicus, caecum, female, ovariectomy, age 38 weeks, united states of america, research facility2018-02-27v4No1 / 150
358amnonhigher in dnbs induced colitis compared to controls in rat feces ( high in dnbs induced colitis colitis compared to control in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 154
399amnoncommon feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 184
584amnoncommon male, rattus norvegicus, rat, sprague dawley, research facility, feces, china, type i diabetes mellitus, induced type 1 diabetes2020-01-31v3No1 / 202
584amnoncommon male, rattus norvegicus, rat, sprague dawley, research facility, feces, control, china2020-01-31v3No1 / 221
349amnoncommon rattus, rat, feces, research facility, sprague dawley, male, china2018-07-29v4No1 / 235
434amnonlower in antibiotics treated rats compared to controls ( high in control compared to antibiotic neomycin ampicillin in rat rattus norvegicus sprague dawley feces caecum research facility switzerland )2018-12-20v4No1 / 238
434amnoncommon rat, rattus norvegicus, sprague dawley, feces, caecum, research facility, switzerland2018-12-20v4No1 / 238
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, control diet2020-02-09v4No1 / 241
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, salt rich diet, salt2018-12-13v4No1 / 249
419amnoncommon rat, rattus norvegicus, sprague dawley, research facility, feces, china2018-12-02v4No1 / 254
586amnoncommon rattus norvegicus, rat, sprague dawley, research facility, male, israel, feces, fructose diet, fructose2020-02-09v4No1 / 287
419amnoncommon in rats with induced constipation (common rat, rattus norvegicus, sprague dawley, research facility, feces, constipation, china)2018-12-02v4No1 / 300
358amnoncommon rattus, rat, research facility, wistar rat, czech republic, feces2018-08-19v4No1 / 309
429amnoncommon rat, rattus norvegicus, dahl salt-sensitive, feces, israel, research facility, control diet2018-12-13v4No1 / 327
187amnoncommon rat, rattus, research facility, feces, wistar rat, czech republic2017-08-23v4No1 / 351
442amnoncommon in tnbs induced colitis in rat feces (common rattus norvegicus, rat, sprague dawley, male, research facility, feces, tnbs, colitis, china)2019-01-06v4No1 / 360
442amnoncommon rattus norvegicus, rat, sprague dawley, male, research facility, feces, china2019-01-06v4No1 / 378
186amnoncommon rattus, rat, sprague dawley, research facility, caecum, united states of america2017-08-23v4No1 / 407
221amnoncommon rattus, sprague dawley, rat, feces, research facility, china2017-10-25v4No1 / 470
358amnonlower in dnbs induced colitis compared to controls in rat feces ( high in control compared to dnbs induced colitis colitis in rattus rat research facility wistar rat czech republic feces )2018-08-19v4No1 / 754

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