Summary for ontology term: root

Number of annotations with term: 69

Annotations:

common ontology terms
term enrichment score
TermScore
root0.871893
rice0.315789
oryza sativa0.292683
LOWER IN root0.290909
state of california0.261307
paddy field0.258065
rhizosphere0.235294
citrus0.202020
marine eelgrass0.197531
zostera marina0.197531
brassicaceae0.188235
boechera stricta0.188235
state of idaho0.188235
LOWER IN rhizosphere0.163170
florida0.155039
cultivated habitat0.152381
bodega bay0.148148
populus0.148148
agave0.148148
root endosphere0.148148
plant0.128000
merlot0.126582
grapevine0.126582
new york0.126582
mexico0.122699
state of tennessee0.121212
tree0.121212
ocean0.120301
vitis vinifera0.119048
desert0.108108
davis, ca0.103896
arbuckle, ca0.103896
guanajuato0.103896
biggs, ca0.103896
soil0.099174
wheat0.094118
triticum aestivum0.089888
soybean0.076923
depth 0-20cm0.074074
glycine max0.074074
LOWER IN soil0.068966
quincy, fl0.054795
immokalee, fl0.054795
gainesville, fl0.054795
root structure0.054795
vero beach, fl0.054795
rhizome0.054795
agave deserti0.054795
agave salmiana0.054795
agave tequiliana0.054795
united states of america0.053959
LOWER IN leaf0.053333
leaf0.045455
china0.040936
pierce, fl0.028169
LOWER IN root structure0.028169
root nodule0.028169
myrtillocactus geometrizans0.028169
opuntia robusta0.028169
root interior0.028169
LOWER IN bulk soil0.028169
bulk soil0.028169
populus deltoides0.028169
LOWER IN populus trichocarpa x deltoides0.028169
populus trichocarpa x deltoides0.028169
LOWER IN populus deltoides0.028169
ft. pierce, fl0.028169
cactus0.027778
semi-arid0.027778
LOWER IN marine sediment0.027397
drought environment0.027397
LOWER IN drought environment0.027397
LOWER IN sediment0.027027
marine sediment0.024390
sediment0.021739
research facility0.019851
LOWER IN control0.011111
control0.010989
Fraction of dbbact annotations with this term covered by the query
TermScore
root0.923077
LOWER IN root0.888889
marine eelgrass0.666667
zostera marina0.666667
quincy, fl0.500000
immokalee, fl0.500000
pierce, fl0.500000
gainesville, fl0.500000
root structure0.500000
LOWER IN root structure0.500000
paddy field0.500000
davis, ca0.500000
root nodule0.500000
myrtillocactus geometrizans0.500000
opuntia robusta0.500000
root interior0.500000
vero beach, fl0.500000
arbuckle, ca0.500000
merlot0.500000
grapevine0.500000
new york0.500000
rhizome0.500000
bodega bay0.500000
LOWER IN bulk soil0.500000
bulk soil0.500000
populus0.500000
populus deltoides0.500000
LOWER IN populus trichocarpa x deltoides0.500000
populus trichocarpa x deltoides0.500000
LOWER IN populus deltoides0.500000
agave0.500000
root endosphere0.500000
agave deserti0.500000
agave salmiana0.500000
guanajuato0.500000
agave tequiliana0.500000
brassicaceae0.500000
boechera stricta0.500000
state of idaho0.500000
biggs, ca0.500000
ft. pierce, fl0.500000
LOWER IN rhizosphere0.416667
rice0.400000
mexico0.400000
citrus0.333333
soybean0.333333
oryza sativa0.333333
cactus0.333333
semi-arid0.333333
vitis vinifera0.333333
LOWER IN leaf0.333333
depth 0-20cm0.250000
glycine max0.250000
LOWER IN marine sediment0.250000
wheat0.250000
drought environment0.250000
LOWER IN drought environment0.250000
cultivated habitat0.222222
rhizosphere0.214286
state of california0.200000
LOWER IN sediment0.200000
triticum aestivum0.200000
state of tennessee0.200000
tree0.200000
florida0.166667
LOWER IN soil0.166667
desert0.142857
plant0.142857
ocean0.125000
leaf0.105263
soil0.080000
marine sediment0.076923
sediment0.043478
united states of america0.028409
china0.025641
research facility0.010526
LOWER IN control0.009009
control0.008850
Fraction of annotations for the query sequences containing the term
TermScore
root0.826087
united states of america0.536232
state of california0.376812
rhizosphere0.260870
oryza sativa0.260870
rice0.260870
LOWER IN root0.173913
paddy field0.173913
research facility0.173913
citrus0.144928
florida0.144928
soil0.130435
marine eelgrass0.115942
zostera marina0.115942
ocean0.115942
cultivated habitat0.115942
brassicaceae0.115942
boechera stricta0.115942
plant0.115942
state of idaho0.115942
LOWER IN rhizosphere0.101449
china0.101449
bodega bay0.086957
state of tennessee0.086957
populus0.086957
tree0.086957
agave0.086957
desert0.086957
root endosphere0.086957
mexico0.072464
merlot0.072464
vitis vinifera0.072464
grapevine0.072464
new york0.072464
davis, ca0.057971
arbuckle, ca0.057971
triticum aestivum0.057971
wheat0.057971
guanajuato0.057971
biggs, ca0.057971
LOWER IN soil0.043478
depth 0-20cm0.043478
glycine max0.043478
soybean0.043478
quincy, fl0.028986
immokalee, fl0.028986
gainesville, fl0.028986
root structure0.028986
vero beach, fl0.028986
rhizome0.028986
leaf0.028986
LOWER IN leaf0.028986
agave deserti0.028986
agave salmiana0.028986
agave tequiliana0.028986
pierce, fl0.014493
LOWER IN root structure0.014493
root nodule0.014493
myrtillocactus geometrizans0.014493
opuntia robusta0.014493
cactus0.014493
semi-arid0.014493
root interior0.014493
LOWER IN sediment0.014493
LOWER IN marine sediment0.014493
sediment0.014493
marine sediment0.014493
LOWER IN bulk soil0.014493
bulk soil0.014493
populus deltoides0.014493
LOWER IN populus trichocarpa x deltoides0.014493
populus trichocarpa x deltoides0.014493
LOWER IN populus deltoides0.014493
drought environment0.014493
LOWER IN control0.014493
control0.014493
LOWER IN drought environment0.014493
ft. pierce, fl0.014493
Exp. ID User ID Description Date Sequences
101amnonhighfreq root, merlot, vitis vinifera, grapevine, new york, united states of america2017-04-031 / 1
155amnonhigh freq in soil tightly bound to wheat root (highfreq triticum aestivum, wheat, china, soil, root)2017-07-021 / 2
171amnonhighfreq united states of america, state of california, oryza sativa, rice, root2017-07-251 / 2
266amnonhigh freq. in roots in SIL garden (highfreq brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-191 / 6
98amnonhighfreq citrus, rhizosphere, florida, root, pierce, fl2017-04-011 / 7
98amnonhighfreq citrus, rhizosphere, florida, root, quincy, fl2017-04-011 / 8
236amnonhighfreq state of california, bodega bay, ocean, zostera marina, marine eelgrass, root2017-11-071 / 8
98amnonhighfreq citrus, rhizosphere, florida, root, immokalee, fl2017-04-011 / 9
98amnonhighfreq citrus, rhizosphere, florida, root, gainesville, fl2017-04-011 / 9
462amnonhighfreq united states of america, state of tennessee, cultivated habitat, populus, tree, root2019-01-131 / 9
235amnonhigh freq. in eelgrass roots (highfreq root, ocean, rhizome, zostera marina, marine eelgrass)2017-11-071 / 12
266amnonhigh freq. in roots in JAM garden (highfreq brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-191 / 12
266amnonhigh freq. in roots in MAH garden (highfreq brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-191 / 12
98amnonhighfreq citrus, rhizosphere, florida, root, vero beach, fl2017-04-011 / 13
360amnonhighfreq agave, desert, root, root endosphere, agave deserti, state of california2018-08-211 / 13
360amnonhighfreq agave, desert, root, root endosphere, agave salmiana, mexico, guanajuato2018-08-211 / 13
465amnonhighfreq paddy field, oryza sativa, rice, state of california, united states of america, research facility, davis, ca, root2019-01-131 / 13
465amnonhighfreq paddy field, oryza sativa, rice, state of california, united states of america, research facility, biggs, ca, root2019-01-131 / 15
465amnonhighfreq paddy field, oryza sativa, rice, state of california, united states of america, research facility, arbuckle, ca, root2019-01-131 / 16
360amnonhighfreq agave, desert, root, root endosphere, mexico, guanajuato, agave tequiliana, cultivated habitat2018-08-211 / 17
271amnoncommon china, depth 0-20cm, glycine max, soybean, root, root nodule, root structure2018-01-091 / 20
465amnon high in root compared to soil rhizosphere in paddy field oryza sativa rice state of california united states of america research facility arbuckle, ca 2019-01-131 / 22
465amnon high in root compared to rhizosphere in paddy field oryza sativa rice state of california united states of america research facility biggs, ca 2019-01-131 / 24
465amnon high in root compared to soil rhizosphere in paddy field oryza sativa rice state of california united states of america research facility davis, ca 2019-01-131 / 27
129amnonfound INSIDE roots of cactus (common mexico, myrtillocactus geometrizans, opuntia robusta, cactus, semi-arid, root, root interior)2017-04-151 / 29
465amnoncommon paddy field, oryza sativa, rice, state of california, united states of america, research facility, davis, ca, root2019-01-131 / 32
465amnoncommon paddy field, oryza sativa, rice, state of california, united states of america, research facility, arbuckle, ca, root2019-01-131 / 34
465amnoncommon paddy field, oryza sativa, rice, state of california, united states of america, research facility, biggs, ca, root2019-01-131 / 40
462amnoncommon united states of america, state of tennessee, cultivated habitat, populus, tree, root2019-01-131 / 51
360amnoncommon agave, desert, root, root endosphere, agave deserti, state of california2018-08-211 / 52
462amnon high in root compared to rhizosphere in united states of america state of tennessee cultivated habitat populus tree 2019-01-131 / 57
360amnoncommon agave, desert, root, root endosphere, mexico, guanajuato, agave tequiliana, cultivated habitat2018-08-211 / 62
360amnoncommon agave, desert, root, root endosphere, agave salmiana, mexico, guanajuato2018-08-211 / 87
271amnon high in root root structure compared to soil rhizosphere in china depth 0-20cm glycine max soybean 2018-01-091 / 110
235amnoncommon in eelgrass roots (common marine eelgrass, zostera marina, ocean, root, rhizome)2017-11-071 / 116
171amnoncommon united states of america, state of california, oryza sativa, rice, root2017-07-251 / 156
171amnonhigher in roots compared to rhizosphere soil in rice ( high in root compared to rhizosphere in united states of america state of california oryza sativa rice )2017-07-251 / 213
462amnon high in populus deltoides compared to populus trichocarpa x deltoides in united states of america state of tennessee cultivated habitat populus tree root 2019-01-131 / 254
465amnon high in soil rhizosphere compared to root in paddy field oryza sativa rice state of california united states of america research facility biggs, ca 2019-01-131 / 260
171amnonhigher in roots of drought irrigated rice compared to irrigated conrols ( high in drought environment compared to control in united states of america state of california oryza sativa rice root )2017-07-251 / 282
236amnon high in leaf compared to root in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-071 / 287
171amnonlower in roots of drought irrigated rice compared to irrigated conrols ( high in control compared to drought environment in united states of america state of california oryza sativa rice root )2017-07-251 / 288
462amnon high in populus trichocarpa x deltoides compared to populus deltoides in united states of america state of tennessee cultivated habitat populus tree root 2019-01-131 / 300
465amnon high in soil rhizosphere compared to root in paddy field oryza sativa rice state of california united states of america research facility davis, ca 2019-01-131 / 320
465amnon high in rhizosphere soil compared to root in paddy field oryza sativa rice state of california united states of america research facility arbuckle, ca 2019-01-131 / 436
236amnoncommon state of california, bodega bay, ocean, zostera marina, marine eelgrass, root2017-11-071 / 483
98amnoncommon citrus, rhizosphere, florida, root, immokalee, fl2017-04-011 / 543
98amnoncommon citrus, rhizosphere, florida, vero beach, fl, root2017-04-011 / 544
236amnon high in root compared to sediment marine sediment in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-071 / 674
236amnon high in root compared to leaf in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-071 / 819
266amnoncommon in roots in JAM garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-191 / 843
98amnoncommon citrus, rhizosphere, florida, root, quincy, fl2017-04-011 / 950
101amnoncommon root, merlot, vitis vinifera, grapevine, new york, united states of america2017-04-031 / 1106
266amnoncommon in roots in MAH garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-191 / 1110
266amnon high in leaf compared to root in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-191 / 1175
101amnon high in rhizosphere compared to root in vitis vinifera united states of america merlot grapevine new york 2017-04-031 / 1315
98amnoncommon citrus, rhizosphere, florida, root, ft. pierce, fl2017-04-011 / 1340
98amnoncommon citrus, rhizosphere, florida, root, gainesville, fl2017-04-011 / 1371
266amnoncoomon in roots in SIL garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-191 / 1399
101amnon high in rhizosphere compared to root in vitis vinifera united states of america merlot grapevine new york 2017-04-031 / 1588
155amnonhigher in tightly bound root soil compared to loose soil and bulk soil ( high in root compared to bulk soil in triticum aestivum wheat china soil )2017-07-021 / 1714
155amnoncommon in soil tightly bound to wheat root (common triticum aestivum, wheat, china, soil, root)2017-07-021 / 1977
101amnon high in root compared to rhizosphere in vitis vinifera united states of america merlot grapevine new york 2017-04-031 / 2075
236amnon high in sediment marine sediment compared to root in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-071 / 2745
155amnonlower in tightly bound root soil compared to loose soil and bulk soil ( high in bulk soil compared to root in triticum aestivum wheat china soil )2017-07-021 / 2933
462amnon high in rhizosphere compared to root in united states of america state of tennessee cultivated habitat populus tree 2019-01-131 / 4630
266amnon high in root compared to leaf in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-191 / 5886
171amnonlower in roots compared to rhizosphere soil in rice ( high in rhizosphere soil compared to root in united states of america state of california oryza sativa rice )2017-07-251 / 7628
271amnon high in soil rhizosphere compared to root root structure in china depth 0-20cm glycine max soybean 2018-01-091 / 7954

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