Summary for ontology term: root

Number of annotations with term: 63

Annotations:

common ontology terms
term enrichment score
TermScore
root0.880277
LOWER IN root0.269360
rhizosphere0.237037
root endosphere0.225352
citrus0.215054
marine eelgrass0.213333
zostera marina0.213333
plant0.205607
brassicaceae0.202532
boechera stricta0.202532
state of idaho0.202532
state of california0.184615
cultivated habitat0.168421
florida0.162602
campos rupestres0.160000
minas gerais state0.160000
populus0.160000
bodega bay0.160000
agave0.160000
rice0.137931
merlot0.136986
grapevine0.136986
new york0.136986
LOWER IN rhizosphere0.133333
mexico0.132450
state of tennessee0.129032
tree0.129032
oryza sativa0.129032
vitis vinifera0.128205
ocean0.125984
desert0.114286
vellozia epidendroides0.112676
guanajuato0.112676
wheat0.106667
triticum aestivum0.101266
soybean0.083333
brazil0.081633
depth 0-20cm0.080000
glycine max0.080000
soil0.072727
quincy, fl0.059701
immokalee, fl0.059701
gainesville, fl0.059701
root structure0.059701
rhizome0.059701
agave deserti0.059701
agave salmiana0.059701
agave tequiliana0.059701
vero beach, fl0.059701
LOWER IN leaf0.057971
leaf0.049383
united states of america0.041867
china0.039216
pierce, fl0.030769
LOWER IN root structure0.030769
root nodule0.030769
populus deltoides0.030769
LOWER IN populus trichocarpa x deltoides0.030769
populus trichocarpa x deltoides0.030769
LOWER IN populus deltoides0.030769
LOWER IN bulk soil0.030769
bulk soil0.030769
myrtillocactus geometrizans0.030769
opuntia robusta0.030769
root interior0.030769
ft. pierce, fl0.030769
drought environment0.030303
LOWER IN drought environment0.030303
cactus0.030303
semi-arid0.030303
LOWER IN marine sediment0.029851
LOWER IN sediment0.029412
LOWER IN soil0.027027
marine sediment0.026316
sediment0.023256
LOWER IN control0.011111
control0.011050
Fraction of dbbact annotations with this term covered by the query
TermScore
root endosphere1.000000
root0.923077
LOWER IN root0.888889
marine eelgrass0.666667
zostera marina0.666667
quincy, fl0.500000
immokalee, fl0.500000
pierce, fl0.500000
gainesville, fl0.500000
LOWER IN root structure0.500000
root structure0.500000
root nodule0.500000
merlot0.500000
grapevine0.500000
new york0.500000
vellozia epidendroides0.500000
campos rupestres0.500000
minas gerais state0.500000
rhizome0.500000
populus0.500000
populus deltoides0.500000
LOWER IN populus trichocarpa x deltoides0.500000
bodega bay0.500000
populus trichocarpa x deltoides0.500000
LOWER IN populus deltoides0.500000
agave0.500000
agave deserti0.500000
agave salmiana0.500000
guanajuato0.500000
agave tequiliana0.500000
brassicaceae0.500000
boechera stricta0.500000
state of idaho0.500000
LOWER IN bulk soil0.500000
bulk soil0.500000
vero beach, fl0.500000
myrtillocactus geometrizans0.500000
opuntia robusta0.500000
root interior0.500000
ft. pierce, fl0.500000
LOWER IN rhizosphere0.416667
mexico0.400000
citrus0.333333
soybean0.333333
vitis vinifera0.333333
LOWER IN leaf0.333333
drought environment0.333333
LOWER IN drought environment0.333333
wheat0.333333
cactus0.333333
semi-arid0.333333
depth 0-20cm0.250000
glycine max0.250000
plant0.250000
cultivated habitat0.250000
LOWER IN marine sediment0.250000
rice0.250000
triticum aestivum0.250000
rhizosphere0.222222
state of tennessee0.200000
tree0.200000
LOWER IN sediment0.200000
oryza sativa0.200000
florida0.166667
state of california0.157895
desert0.142857
ocean0.125000
leaf0.111111
LOWER IN soil0.090909
marine sediment0.076923
brazil0.071429
soil0.058824
sediment0.043478
china0.023810
united states of america0.022099
LOWER IN control0.008547
control0.008475
Fraction of annotations for the query sequences containing the term
TermScore
root0.841270
united states of america0.396825
rhizosphere0.253968
state of california0.222222
plant0.174603
citrus0.158730
florida0.158730
LOWER IN root0.158730
root endosphere0.126984
marine eelgrass0.126984
zostera marina0.126984
ocean0.126984
cultivated habitat0.126984
brassicaceae0.126984
boechera stricta0.126984
state of idaho0.126984
china0.111111
soil0.095238
brazil0.095238
campos rupestres0.095238
minas gerais state0.095238
state of tennessee0.095238
populus0.095238
tree0.095238
bodega bay0.095238
agave0.095238
desert0.095238
oryza sativa0.095238
rice0.095238
LOWER IN rhizosphere0.079365
merlot0.079365
vitis vinifera0.079365
grapevine0.079365
new york0.079365
mexico0.079365
vellozia epidendroides0.063492
guanajuato0.063492
triticum aestivum0.063492
wheat0.063492
depth 0-20cm0.047619
glycine max0.047619
soybean0.047619
quincy, fl0.031746
immokalee, fl0.031746
gainesville, fl0.031746
root structure0.031746
barbacenia macrantha0.031746
rhizome0.031746
leaf0.031746
LOWER IN leaf0.031746
agave deserti0.031746
agave salmiana0.031746
agave tequiliana0.031746
vero beach, fl0.031746
pierce, fl0.015873
LOWER IN root structure0.015873
LOWER IN soil0.015873
root nodule0.015873
populus deltoides0.015873
LOWER IN populus trichocarpa x deltoides0.015873
populus trichocarpa x deltoides0.015873
LOWER IN populus deltoides0.015873
LOWER IN sediment0.015873
LOWER IN marine sediment0.015873
sediment0.015873
marine sediment0.015873
drought environment0.015873
LOWER IN control0.015873
control0.015873
LOWER IN drought environment0.015873
LOWER IN bulk soil0.015873
bulk soil0.015873
myrtillocactus geometrizans0.015873
opuntia robusta0.015873
cactus0.015873
semi-arid0.015873
root interior0.015873
ft. pierce, fl0.015873
Exp. ID User ID Description Date Region Flag Sequences
101amnonhighfreq root, merlot, vitis vinifera, grapevine, new york, united states of america2017-04-03v4No1 / 1
171amnonhighfreq united states of america, state of california, oryza sativa, rice, root2017-07-25v4No1 / 2
155amnonhigh freq in soil tightly bound to wheat root (highfreq triticum aestivum, wheat, china, soil, root)2017-07-02v4No1 / 2
548amnonhighfreq root endosphere, barbacenia macrantha, root, brazil, campos rupestres, minas gerais state2019-08-17v4No1 / 6
266amnonhigh freq. in roots in SIL garden (highfreq brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v4No1 / 6
98amnonhighfreq citrus, rhizosphere, florida, root, pierce, fl2017-04-01v4No1 / 7
98amnonhighfreq citrus, rhizosphere, florida, root, quincy, fl2017-04-01v4No1 / 8
236amnonhighfreq state of california, bodega bay, ocean, zostera marina, marine eelgrass, root2017-11-07v4No1 / 8
98amnonhighfreq citrus, rhizosphere, florida, root, immokalee, fl2017-04-01v4No1 / 9
98amnonhighfreq citrus, rhizosphere, florida, root, gainesville, fl2017-04-01v4No1 / 9
462amnonhighfreq united states of america, state of tennessee, cultivated habitat, populus, tree, root2019-01-13v4No1 / 9
548amnonhigh freq. in endopytic roots of Vellozia epidendroides (highfreq plant, root, vellozia epidendroides, brazil, campos rupestres, minas gerais state)2019-08-15v4No1 / 11
235amnonhigh freq. in eelgrass roots (highfreq root, ocean, rhizome, zostera marina, marine eelgrass)2017-11-07v4No1 / 12
266amnonhigh freq. in roots in JAM garden (highfreq brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v4No1 / 12
266amnonhigh freq. in roots in MAH garden (highfreq brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v4No1 / 12
360amnonhighfreq agave, desert, root, root endosphere, agave deserti, state of california2018-08-21v4No1 / 13
360amnonhighfreq agave, desert, root, root endosphere, agave salmiana, mexico, guanajuato2018-08-21v4No1 / 13
98amnonhighfreq citrus, rhizosphere, florida, root, vero beach, fl2017-04-01v4No1 / 13
360amnonhighfreq agave, desert, root, root endosphere, mexico, guanajuato, agave tequiliana, cultivated habitat2018-08-21v4No1 / 17
271amnoncommon china, depth 0-20cm, glycine max, soybean, root, root nodule, root structure2018-01-09v4No1 / 20
129amnonfound INSIDE roots of cactus (common mexico, myrtillocactus geometrizans, opuntia robusta, cactus, semi-arid, root, root interior)2017-04-15v4No1 / 29
462amnoncommon united states of america, state of tennessee, cultivated habitat, populus, tree, root2019-01-13v4No1 / 51
360amnoncommon agave, desert, root, root endosphere, agave deserti, state of california2018-08-21v4No1 / 52
462amnon high in root compared to rhizosphere in united states of america state of tennessee cultivated habitat populus tree 2019-01-13v4No1 / 57
360amnoncommon agave, desert, root, root endosphere, mexico, guanajuato, agave tequiliana, cultivated habitat2018-08-21v4No1 / 62
360amnoncommon agave, desert, root, root endosphere, agave salmiana, mexico, guanajuato2018-08-21v4No1 / 87
548amnon high in plant root compared to rhizosphere in vellozia epidendroides brazil campos rupestres minas gerais state 2019-08-15v4No1 / 100
271amnon high in root root structure compared to soil rhizosphere in china depth 0-20cm glycine max soybean 2018-01-09v4No1 / 110
235amnoncommon in eelgrass roots (common marine eelgrass, zostera marina, ocean, root, rhizome)2017-11-07v4No1 / 116
171amnoncommon united states of america, state of california, oryza sativa, rice, root2017-07-25v4No1 / 156
548amnon high in rhizosphere compared to root in vellozia epidendroides brazil campos rupestres minas gerais state 2019-08-15v4No1 / 197
171amnonhigher in roots compared to rhizosphere soil in rice ( high in root compared to rhizosphere in united states of america state of california oryza sativa rice )2017-07-25v4No1 / 213
462amnon high in populus deltoides compared to populus trichocarpa x deltoides in united states of america state of tennessee cultivated habitat populus tree root 2019-01-13v4No1 / 254
171amnonhigher in roots of drought irrigated rice compared to irrigated conrols ( high in drought environment compared to control in united states of america state of california oryza sativa rice root )2017-07-25v4No1 / 282
236amnon high in leaf compared to root in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 287
171amnonlower in roots of drought irrigated rice compared to irrigated conrols ( high in control compared to drought environment in united states of america state of california oryza sativa rice root )2017-07-25v4No1 / 288
462amnon high in populus trichocarpa x deltoides compared to populus deltoides in united states of america state of tennessee cultivated habitat populus tree root 2019-01-13v4No1 / 300
236amnoncommon state of california, bodega bay, ocean, zostera marina, marine eelgrass, root2017-11-07v4No1 / 483
98amnoncommon citrus, rhizosphere, florida, root, immokalee, fl2017-04-01v4No1 / 543
98amnoncommon citrus, rhizosphere, florida, vero beach, fl, root2017-04-01v4No1 / 544
548amnoncommon root endosphere, barbacenia macrantha, root, brazil, campos rupestres, minas gerais state2019-08-17v4No1 / 575
236amnon high in root compared to sediment marine sediment in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 674
548amnoncommon in endopytic roots of Vellozia epidendroides (common plant, root, vellozia epidendroides, brazil, campos rupestres, minas gerais state)2019-08-15v4No1 / 800
236amnon high in root compared to leaf in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 819
266amnoncommon in roots in JAM garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v4No1 / 843
98amnoncommon citrus, rhizosphere, florida, root, quincy, fl2017-04-01v4No1 / 950
101amnoncommon root, merlot, vitis vinifera, grapevine, new york, united states of america2017-04-03v4No1 / 1106
266amnoncommon in roots in MAH garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v4No1 / 1110
266amnon high in leaf compared to root in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-19v4No1 / 1175
101amnon high in rhizosphere compared to root in vitis vinifera united states of america merlot grapevine new york 2017-04-03v4No1 / 1315
98amnoncommon citrus, rhizosphere, florida, root, ft. pierce, fl2017-04-01v4No1 / 1340
98amnoncommon citrus, rhizosphere, florida, root, gainesville, fl2017-04-01v4No1 / 1371
266amnoncoomon in roots in SIL garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v4No1 / 1399
101amnon high in rhizosphere compared to root in vitis vinifera united states of america merlot grapevine new york 2017-04-03v4No1 / 1588
155amnonhigher in tightly bound root soil compared to loose soil and bulk soil ( high in root compared to bulk soil in triticum aestivum wheat china soil )2017-07-02v4No1 / 1714
155amnoncommon in soil tightly bound to wheat root (common triticum aestivum, wheat, china, soil, root)2017-07-02v4No1 / 1977
101amnon high in root compared to rhizosphere in vitis vinifera united states of america merlot grapevine new york 2017-04-03v4No1 / 2075
236amnon high in sediment marine sediment compared to root in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 2745
155amnonlower in tightly bound root soil compared to loose soil and bulk soil ( high in bulk soil compared to root in triticum aestivum wheat china soil )2017-07-02v4No1 / 2933
462amnon high in rhizosphere compared to root in united states of america state of tennessee cultivated habitat populus tree 2019-01-13v4No1 / 4630
266amnon high in root compared to leaf in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-19v4No1 / 5886
171amnonlower in roots compared to rhizosphere soil in rice ( high in rhizosphere soil compared to root in united states of america state of california oryza sativa rice )2017-07-25v4No1 / 7628
271amnon high in soil rhizosphere compared to root root structure in china depth 0-20cm glycine max soybean 2018-01-09v4No1 / 7954

Problems / suggestions? Please email info AT dbbact DOT org