Summary for ontology term: rumen

Number of annotations with term: 75

Annotations:

common ontology terms
term enrichment score
TermScore
rumen0.958671
rumen liquid0.414815
ovis aries0.390244
bos taurus0.346154
bos grunniens0.281588
sheep0.278261
shandong province0.271845
ruminal fluid0.263736
ireland0.242424
yak0.240437
alpine meadow0.175824
lamb0.175824
holstein-friesian bull0.175824
capra hircus0.161538
goat0.161538
ruminant reticulum0.142857
omasum0.142857
tibetan plateau0.130081
nanjing city prefecture0.129032
china0.126761
cow0.114286
digesta0.114286
diet0.108108
female organism0.108108
restricted feed0.098765
dairy0.096386
chinese bohai black beef cattle0.096386
chinese luxi yellow beef cattle0.096386
holstein dairy cow0.096386
mongolian sheep0.096386
age 100 days0.096386
camel0.096386
camelus dromedarius0.096386
age 30 days0.091954
qinghai province0.091954
state of nebraska0.087912
pregnancy0.085106
research facility0.084507
age < 1 year0.080808
egypt0.080808
farm0.077778
LOWER IN ruminant reticulum0.075949
LOWER IN omasum0.075949
chinese laoshan milk goat0.074074
obsolete_juvenile stage0.069565
italy0.057554
age0.056338
LOWER IN colon0.051282
colon0.051282
LOWER IN rumen0.051282
LOWER IN caecum0.050633
green stage diet0.050633
LOWER IN grass growth diet0.050633
grass growth diet0.050633
LOWER IN green stage diet0.050633
LOWER IN withered grass diet0.050633
withered grass diet0.050633
LOWER IN chinese luxi yellow beef cattle0.050633
LOWER IN chinese bohai black beef cattle0.050633
hainan black goat0.050633
creole goat0.050633
municipality of beijing0.049383
age 2 years0.049383
argentina0.049383
LOWER IN rectum0.048780
spring0.048193
caecum0.048193
LOWER IN spring0.048193
hainan autonomous prefecture0.048193
age 5 years0.048193
rectum0.047059
age 2 months0.045977
male organism0.044944
kingdom of norway0.043956
male0.043011
sweden0.041237
child0.039409
LOWER IN winter0.038095
winter0.037383
LOWER IN summer0.034783
summer0.034783
female0.028777
abomasum0.025974
LOWER IN older age0.025974
younger age0.025974
LOWER IN high milk yield0.025974
low milk yield0.025974
LOWER IN low milk yield0.025974
high milk yield0.025974
LOWER IN chinese laoshan milk goat0.025974
LOWER IN goat0.025974
LOWER IN capra hircus0.025974
linseed oil food product0.025974
LOWER IN linseed oil food product0.025974
LOWER IN normal feed0.025974
LOWER IN restricted diet0.025974
660 days0.025974
LOWER IN 605 days0.025974
605 days0.025974
LOWER IN 660 days0.025974
Fraction of dbbact annotations with this term covered by the query
TermScore
rumen0.944444
rumen liquid0.800000
bos grunniens0.750000
ruminal fluid0.750000
LOWER IN ruminant reticulum0.750000
LOWER IN omasum0.750000
ruminant reticulum0.666667
omasum0.666667
yak0.666667
LOWER IN colon0.666667
colon0.666667
LOWER IN rumen0.666667
restricted feed0.666667
capra hircus0.600000
goat0.600000
ovis aries0.500000
dairy0.500000
alpine meadow0.500000
LOWER IN caecum0.500000
green stage diet0.500000
LOWER IN grass growth diet0.500000
grass growth diet0.500000
LOWER IN green stage diet0.500000
LOWER IN withered grass diet0.500000
withered grass diet0.500000
abomasum0.500000
lamb0.500000
LOWER IN older age0.500000
younger age0.500000
shandong province0.500000
chinese bohai black beef cattle0.500000
chinese laoshan milk goat0.500000
chinese luxi yellow beef cattle0.500000
holstein dairy cow0.500000
LOWER IN high milk yield0.500000
low milk yield0.500000
LOWER IN low milk yield0.500000
high milk yield0.500000
LOWER IN chinese luxi yellow beef cattle0.500000
LOWER IN chinese bohai black beef cattle0.500000
LOWER IN chinese laoshan milk goat0.500000
LOWER IN goat0.500000
LOWER IN capra hircus0.500000
mongolian sheep0.500000
ireland0.500000
age 100 days0.500000
linseed oil food product0.500000
LOWER IN linseed oil food product0.500000
holstein-friesian bull0.500000
LOWER IN normal feed0.500000
LOWER IN restricted diet0.500000
660 days0.500000
LOWER IN 605 days0.500000
605 days0.500000
LOWER IN 660 days0.500000
LOWER IN rumen solids0.500000
rumen solids0.500000
LOWER IN rumen liquid0.500000
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
camel0.500000
camelus dromedarius0.500000
LOWER IN fresh clover diet0.500000
clover hay diet0.500000
fresh clover diet0.500000
LOWER IN clover hay diet0.500000
LOWER IN restricted feed0.500000
hainan black goat0.500000
creole goat0.500000
sheep0.400000
age 30 days0.333333
qinghai province0.333333
LOWER IN younger age0.333333
older age0.333333
bos taurus0.333333
LOWER IN bos taurus0.333333
municipality of beijing0.333333
age 2 years0.333333
nanjing city prefecture0.333333
argentina0.333333
LOWER IN rectum0.285714
spring0.250000
caecum0.250000
LOWER IN spring0.250000
state of nebraska0.250000
hainan autonomous prefecture0.250000
age 5 years0.250000
rectum0.200000
normal diet0.200000
cow0.200000
digesta0.200000
tibetan plateau0.166667
age < 1 year0.166667
diet0.166667
Fraction of annotations for the query sequences containing the term
TermScore
rumen0.973333
china0.600000
research facility0.400000
bos taurus0.360000
ovis aries0.320000
rumen liquid0.280000
sheep0.213333
shandong province0.186667
bos grunniens0.173333
ruminal fluid0.160000
ireland0.160000
yak0.146667
tibetan plateau0.106667
alpine meadow0.106667
lamb0.106667
holstein-friesian bull0.106667
farm0.093333
capra hircus0.093333
goat0.093333
ruminant reticulum0.080000
omasum0.080000
diet0.080000
cow0.080000
nanjing city prefecture0.080000
pregnancy0.080000
digesta0.080000
female organism0.080000
female0.080000
age 30 days0.053333
obsolete_juvenile stage0.053333
italy0.053333
dairy0.053333
qinghai province0.053333
age < 1 year0.053333
chinese bohai black beef cattle0.053333
chinese luxi yellow beef cattle0.053333
holstein dairy cow0.053333
mongolian sheep0.053333
child0.053333
age 100 days0.053333
restricted feed0.053333
control0.053333
united states of america0.053333
state of nebraska0.053333
egypt0.053333
camel0.053333
camelus dromedarius0.053333
adult0.053333
LOWER IN ruminant reticulum0.040000
LOWER IN omasum0.040000
age0.040000
chinese laoshan milk goat0.040000
LOWER IN caecum0.026667
LOWER IN colon0.026667
LOWER IN rectum0.026667
green stage diet0.026667
spring0.026667
LOWER IN summer0.026667
LOWER IN grass growth diet0.026667
caecum0.026667
colon0.026667
rectum0.026667
LOWER IN rumen0.026667
grass growth diet0.026667
summer0.026667
LOWER IN green stage diet0.026667
LOWER IN spring0.026667
LOWER IN withered grass diet0.026667
LOWER IN winter0.026667
winter0.026667
withered grass diet0.026667
LOWER IN chinese luxi yellow beef cattle0.026667
LOWER IN chinese bohai black beef cattle0.026667
sweden0.026667
LOWER IN control0.026667
kingdom of norway0.026667
municipality of beijing0.026667
male0.026667
male organism0.026667
age 2 years0.026667
hainan autonomous prefecture0.026667
age 2 months0.026667
hainan black goat0.026667
age 5 years0.026667
creole goat0.026667
argentina0.026667
abomasum0.013333
LOWER IN younger age0.013333
older age0.013333
LOWER IN age0.013333
LOWER IN older age0.013333
younger age0.013333
LOWER IN high milk yield0.013333
low milk yield0.013333
LOWER IN low milk yield0.013333
high milk yield0.013333
LOWER IN chinese laoshan milk goat0.013333
LOWER IN goat0.013333
LOWER IN capra hircus0.013333
LOWER IN bos taurus0.013333
Exp. ID User ID Description Date Region Flag Sequences
491amnonlower in lambs fed linseed oil supplemented diet compared to control diet ( high in control diet compared to linseed oil food product in ovis aries sheep lamb child rumen ireland farm age 100 days )2019-02-26v4No1 / -7
439amnonpresent only in abomasum in yak rumen ( high in abomasum compared to omasum ruminant reticulum in bos grunniens yak rumen farm china )2018-12-31v4No1 / -6
561amnondominant bos grunniens, yak, china, tibetan plateau, alpine meadow, rumen, ruminal fluid2019-11-05v3No1 / -5
491amnonhigher in lambs fed linseed oil supplemented diet compared to control diet ( high in diet linseed oil food product compared to control diet in ovis aries sheep lamb child rumen ireland farm age 100 days )2019-02-26v4No1 / -4
329amnondominant ovis aries, sheep, kingdom of norway, rumen2018-05-13v4No1 / -4
551amnondominant egypt, camel, camelus dromedarius, rumen, adult2019-08-27v3No1 / -1
687amnondominant shandong province, bos taurus, chinese bohai black beef cattle, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 1
701amnondominant municipality of beijing, research facility, china, male, male organism, age 2 years, rumen liquid, rumen, bos taurus, cow2028-04-01v3No1 / 1
687amnondominant chinese luxi yellow beef cattle, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 2
687amnon high in chinese bohai black beef cattle compared to chinese luxi yellow beef cattle in bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 3
657amnondominant research facility, china, qinghai province, rumen liquid, rumen, age < 1 year, lamb, sheep, ovis aries2020-09-13v4No1 / 4
27amnondominant bos grunniens, rumen, china2016-12-05v4No1 / 4
82amnonhigh freq. in dairy cow rumen fluid (dominant bos taurus, sweden, rumen)2017-03-05v4No1 / 4
657amnonnegatively correlated with age ( high in younger age compared to age older age in research facility china qinghai province rumen liquid rumen age < 1 year lamb sheep ovis aries )2020-09-13v4No1 / 6
687amnondominant holstein dairy cow, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 7
687amnondominant chinese laoshan milk goat, capra hircus, goat, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 8
491amnondominant ovis aries, sheep, lamb, child, rumen, ireland, farm, age 100 days2019-02-26v4No1 / 8
83amnondominant bos taurus, rumen, holstein-friesian bull, ireland2017-03-05v4No1 / 8
735amnondominant control, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 8
363amnondominant ovis aries, age 30 days, obsolete_juvenile stage, italy, dairy, rumen, ruminant reticulum, omasum2018-08-29v4No1 / 10
561amnon high in winter withered grass diet compared to spring green stage diet in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 10
111amnondominant rumen, ruminant reticulum, omasum, mongolian sheep, ovis aries, china2017-04-09v4No1 / 10
735amnondominant restricted feed, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 10
261amnondominant bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 11
737amnondominant ruminal fluid, rumen, hainan autonomous prefecture, age 2 months, research facility, hainan black goat, china, goat, capra hircus2021-01-27v3No1 / 11
439amnondominant bos grunniens, yak, rumen, farm, china2018-12-31v4No1 / 12
739amnondominant age 5 years, goat, capra hircus, creole goat, research facility, ruminal fluid, rumen, argentina2021-01-30v4No1 / 18
561amnon high in green stage diet spring compared to withered grass diet winter in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 27
687amnon high in chinese luxi yellow beef cattle compared to chinese bohai black beef cattle in bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 27
83amnonhigher in rumen liquids compared to solids in normal diet cows ( high in rumen liquid compared to rumen solids in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 32
687amnon high in high milk yield compared to low milk yield in holstein dairy cow bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 33
439amnoncommon bos grunniens, yak, rumen, farm, china2018-12-31v4No1 / 44
657amnonpostively correlated with age ( high in older age age compared to younger age in research facility china qinghai province rumen liquid rumen age < 1 year lamb sheep ovis aries )2020-09-13v4No1 / 57
83amnonhigher in rumen solids compared to liquid in normal diet cows ( high in rumen solids compared to rumen liquid in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 59
735amnon high in restricted feed compared to control in research facility nanjing city prefecture china pregnancy digesta rumen female organism female sheep ovis aries 2021-01-22v3No1 / 65
83amnonhigher in earlier timepoint (yonger age) in cow rumen normal diet ( high in 605 days age compared to 660 days in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 72
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 75
363amnon high in caecum colon rectum compared to rumen ruminant reticulum omasum in ovis aries age 30 days obsolete_juvenile stage italy dairy 2018-08-29v4No1 / 93
491amnoncommon ovis aries, sheep, lamb, child, rumen, ireland, farm, age 100 days2019-02-26v4No1 / 97
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 105
735amnon high in control compared to restricted feed in research facility nanjing city prefecture china pregnancy digesta rumen female organism female sheep ovis aries 2021-01-22v3No1 / 112
551amnon high in fresh clover diet compared to clover hay diet in egypt camel camelus dromedarius rumen adult 2019-08-27v3No1 / 128
83amnonhigher in later timepoint (older age) in cow rumen normal diet ( high in age 660 days compared to 605 days in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 240
111amnoncommon rumen, ruminant reticulum, omasum, mongolian sheep, ovis aries, china2017-04-09v4No1 / 245
561amnon high in grass growth diet summer compared to green stage diet spring in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 248
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 258
551amnon high in diet clover hay diet compared to fresh clover diet in egypt camel camelus dromedarius rumen adult 2019-08-27v3No1 / 283
561amnon high in grass growth diet summer compared to withered grass diet winter in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 286
111amnon high in rumen ruminant reticulum omasum compared to rectum ileum caecum colon in mongolian sheep ovis aries china 2017-04-09v4No1 / 286
363amnoncommon ovis aries, age 30 days, obsolete_juvenile stage, italy, dairy, rumen, ruminant reticulum, omasum2018-08-29v4No1 / 294
737amnoncommon ruminal fluid, rumen, hainan autonomous prefecture, age 2 months, research facility, hainan black goat, china, goat, capra hircus2021-01-27v3No1 / 295
687amnon high in chinese laoshan milk goat goat capra hircus compared to chinese bohai black beef cattle chinese luxi yellow beef cattle bos taurus in shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 311
561amnon high in winter withered grass diet compared to grass growth diet summer in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 349
363amnon high in rumen ruminant reticulum omasum compared to caecum colon rectum in ovis aries age 30 days obsolete_juvenile stage italy dairy 2018-08-29v4No1 / 352
551amnoncommon egypt, camel, camelus dromedarius, rumen, adult2019-08-27v3No1 / 362
687amnon high in low milk yield compared to high milk yield in holstein dairy cow bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 368
561amnon high in green stage diet spring compared to summer grass growth diet in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 389
739amnoncommon age 5 years, goat, capra hircus, creole goat, research facility, ruminal fluid, rumen, argentina2021-01-30v4No1 / 392
687amnoncommon chinese laoshan milk goat, capra hircus, goat, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 422
111amnon high in rectum caecum ileum colon compared to rumen ruminant reticulum omasum in mongolian sheep ovis aries china 2017-04-09v4No1 / 456
329amnoncommon ovis aries, sheep, kingdom of norway, rumen2018-05-13v4No1 / 498
657amnoncommon research facility, china, qinghai province, rumen liquid, rumen, age < 1 year, lamb, sheep, ovis aries2020-09-13v4No1 / 509
27amnoncommon bos grunniens, rumen, china2016-12-05v4No1 / 524
687amnoncommon holstein dairy cow, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 586
561amnoncommon bos grunniens, yak, china, tibetan plateau, alpine meadow, rumen, ruminal fluid2019-11-05v3No1 / 662
735amnoncommon restricted feed, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 744
83amnoncommon bos taurus, rumen, holstein-friesian bull, ireland2017-03-05v4No1 / 749
735amnoncommon control, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 761
701amnoncommon municipality of beijing, research facility, china, male, male organism, age 2 years, rumen liquid, rumen, bos taurus, cow2028-04-01v3No1 / 946
687amnon high in chinese bohai black beef cattle chinese luxi yellow beef cattle bos taurus compared to chinese laoshan milk goat goat capra hircus in shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 1015
83amnon high in diet control normal diet compared to restricted diet in bos taurus rumen holstein-friesian bull ireland 2017-03-05v4No1 / 1015
687amnoncommon chinese luxi yellow beef cattle, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 1032
687amnoncommon shandong province, bos taurus, chinese bohai black beef cattle, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 1140
82amnoncommon in dairy cow rumen fluid (common bos taurus, sweden, rumen)2017-03-05v4No1 / 1314
83amnon high in restricted feed diet compared to control normal feed in bos taurus rumen holstein-friesian bull ireland 2017-03-05v4No1 / 1727

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