Summary for ontology term: rumen

Number of annotations with term: 91

Annotations:

common ontology terms
term enrichment score
TermScore
rumen0.958441
ruminal fluid0.437601
bos taurus0.368098
rumen liquid0.358209
ovis aries0.345324
capra hircus0.264317
goat0.264317
sheep0.244275
bos grunniens0.240000
shandong province0.210526
ireland0.208696
yak0.204651
cow0.196721
female organism0.160000
alpine meadow0.149533
state of mississippi0.149533
lamb0.149533
dairy goat0.149533
holstein-friesian bull0.149533
shanxi province0.139130
holstein dairy cow0.137931
ruminant reticulum0.120000
omasum0.120000
china0.116164
tibetan plateau0.115108
nanjing city prefecture0.110092
research facility0.100739
diet0.094488
digesta0.090226
restricted feed0.082474
dairy0.080808
chinese bohai black beef cattle0.080808
chinese luxi yellow beef cattle0.080808
mongolian sheep0.080808
age 100 days0.080808
camel0.080808
camelus dromedarius0.080808
age 30 days0.077670
qinghai province0.077670
state of nebraska0.074766
pregnancy0.073620
egypt0.069565
age < 1 year0.067227
farm0.065574
LOWER IN rumen0.063158
LOWER IN ruminant reticulum0.063158
LOWER IN omasum0.063158
jersey cow0.061856
chinese laoshan milk goat0.061856
subacute rumen acidosis0.061856
acidosis0.061856
obsolete_juvenile stage0.061069
italy0.049080
age0.048980
green stage diet0.042105
LOWER IN grass growth diet0.042105
grass growth diet0.042105
LOWER IN green stage diet0.042105
withered grass diet0.042105
LOWER IN withered grass diet0.042105
LOWER IN chinese luxi yellow beef cattle0.042105
LOWER IN chinese bohai black beef cattle0.042105
hainan black goat0.042105
creole goat0.042105
municipality of beijing0.041237
LOWER IN rectum0.040816
age 2 years0.040404
hainan autonomous prefecture0.040404
argentina0.040404
rectum0.039604
age 5 years0.039604
age 2 months0.038835
LOWER IN colon0.037383
kingdom of norway0.037383
male organism0.037383
LOWER IN caecum0.037037
LOWER IN spring0.036697
colon0.035714
spring0.034783
sweden0.034188
child0.034043
LOWER IN winter0.033058
caecum0.032000
winter0.032000
LOWER IN summer0.029630
summer0.029630
control0.028436
female0.026258
male0.023392
LOWER IN control0.022989
abomasum0.021505
LOWER IN jersey cow0.021505
LOWER IN holstein dairy cow0.021505
LOWER IN ruminal fluid0.021505
LOWER IN older age0.021505
younger age0.021505
LOWER IN high milk yield0.021505
low milk yield0.021505
LOWER IN low milk yield0.021505
high milk yield0.021505
Fraction of dbbact annotations with this term covered by the query
TermScore
rumen0.950000
ruminal fluid0.833333
rumen liquid0.800000
bos grunniens0.750000
LOWER IN rumen0.750000
LOWER IN ruminant reticulum0.750000
LOWER IN omasum0.750000
ruminant reticulum0.666667
omasum0.666667
yak0.666667
holstein dairy cow0.666667
capra hircus0.666667
goat0.666667
restricted feed0.666667
ovis aries0.500000
dairy0.500000
alpine meadow0.500000
green stage diet0.500000
LOWER IN grass growth diet0.500000
grass growth diet0.500000
LOWER IN green stage diet0.500000
withered grass diet0.500000
LOWER IN withered grass diet0.500000
abomasum0.500000
LOWER IN jersey cow0.500000
state of mississippi0.500000
LOWER IN holstein dairy cow0.500000
jersey cow0.500000
LOWER IN ruminal fluid0.500000
lamb0.500000
LOWER IN older age0.500000
younger age0.500000
chinese bohai black beef cattle0.500000
chinese laoshan milk goat0.500000
chinese luxi yellow beef cattle0.500000
LOWER IN high milk yield0.500000
low milk yield0.500000
LOWER IN low milk yield0.500000
high milk yield0.500000
LOWER IN chinese luxi yellow beef cattle0.500000
LOWER IN chinese bohai black beef cattle0.500000
LOWER IN chinese laoshan milk goat0.500000
LOWER IN goat0.500000
LOWER IN capra hircus0.500000
LOWER IN acidosis0.500000
LOWER IN subacute rumen acidosis0.500000
dairy goat0.500000
subacute rumen acidosis0.500000
acidosis0.500000
LOWER IN 5-6 hours0.500000
1-2 hours0.500000
5-6 hours0.500000
LOWER IN 1-2 hours0.500000
mongolian sheep0.500000
ireland0.500000
age 100 days0.500000
linseed oil food product0.500000
LOWER IN linseed oil food product0.500000
holstein-friesian bull0.500000
LOWER IN normal feed0.500000
LOWER IN restricted diet0.500000
660 days0.500000
LOWER IN 605 days0.500000
605 days0.500000
LOWER IN 660 days0.500000
LOWER IN rumen solids0.500000
rumen solids0.500000
LOWER IN rumen liquid0.500000
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
camel0.500000
camelus dromedarius0.500000
LOWER IN fresh clover diet0.500000
clover hay diet0.500000
fresh clover diet0.500000
LOWER IN clover hay diet0.500000
LOWER IN restricted feed0.500000
hainan black goat0.500000
creole goat0.500000
sheep0.400000
bos taurus0.352941
age 30 days0.333333
qinghai province0.333333
LOWER IN younger age0.333333
older age0.333333
shandong province0.333333
shanxi province0.333333
municipality of beijing0.333333
nanjing city prefecture0.333333
LOWER IN rectum0.285714
cow0.272727
LOWER IN bos taurus0.250000
age 2 years0.250000
state of nebraska0.250000
Fraction of annotations for the query sequences containing the term
TermScore
rumen0.967033
china0.582418
research facility0.505495
bos taurus0.384615
ruminal fluid0.296703
ovis aries0.263736
rumen liquid0.230769
sheep0.175824
capra hircus0.164835
goat0.164835
female organism0.153846
cow0.153846
shandong province0.153846
bos grunniens0.142857
united states of america0.131868
ireland0.131868
yak0.120879
tibetan plateau0.087912
alpine meadow0.087912
state of mississippi0.087912
lamb0.087912
dairy goat0.087912
shanxi province0.087912
holstein-friesian bull0.087912
farm0.076923
holstein dairy cow0.076923
control0.076923
ruminant reticulum0.065934
omasum0.065934
diet0.065934
nanjing city prefecture0.065934
pregnancy0.065934
digesta0.065934
female0.065934
age 30 days0.043956
obsolete_juvenile stage0.043956
italy0.043956
dairy0.043956
qinghai province0.043956
age < 1 year0.043956
chinese bohai black beef cattle0.043956
chinese luxi yellow beef cattle0.043956
mongolian sheep0.043956
child0.043956
age 100 days0.043956
restricted feed0.043956
state of nebraska0.043956
egypt0.043956
camel0.043956
camelus dromedarius0.043956
adult0.043956
LOWER IN rumen0.032967
LOWER IN ruminant reticulum0.032967
LOWER IN omasum0.032967
jersey cow0.032967
age0.032967
chinese laoshan milk goat0.032967
LOWER IN control0.032967
subacute rumen acidosis0.032967
acidosis0.032967
LOWER IN caecum0.021978
LOWER IN colon0.021978
LOWER IN rectum0.021978
spring0.021978
green stage diet0.021978
LOWER IN summer0.021978
LOWER IN grass growth diet0.021978
caecum0.021978
colon0.021978
rectum0.021978
LOWER IN spring0.021978
grass growth diet0.021978
summer0.021978
LOWER IN green stage diet0.021978
winter0.021978
withered grass diet0.021978
LOWER IN withered grass diet0.021978
LOWER IN winter0.021978
LOWER IN chinese luxi yellow beef cattle0.021978
LOWER IN chinese bohai black beef cattle0.021978
sweden0.021978
kingdom of norway0.021978
municipality of beijing0.021978
male0.021978
male organism0.021978
age 2 years0.021978
hainan autonomous prefecture0.021978
age 2 months0.021978
hainan black goat0.021978
age 5 years0.021978
creole goat0.021978
argentina0.021978
abomasum0.010989
LOWER IN jersey cow0.010989
LOWER IN holstein dairy cow0.010989
LOWER IN feces0.010989
LOWER IN ruminal fluid0.010989
feces0.010989
LOWER IN younger age0.010989
older age0.010989
Exp. ID User ID Description Date Region Flag Sequences
491amnonlower in lambs fed linseed oil supplemented diet compared to control diet ( high in control diet compared to linseed oil food product in ovis aries sheep lamb child rumen ireland farm age 100 days )2019-02-26v4No1 / 1
439amnonpresent only in abomasum in yak rumen ( high in abomasum compared to omasum ruminant reticulum in bos grunniens yak rumen farm china )2018-12-31v4No1 / 2
561amnondominant bos grunniens, yak, china, tibetan plateau, alpine meadow, rumen, ruminal fluid2019-11-05v3No1 / 3
491amnonhigher in lambs fed linseed oil supplemented diet compared to control diet ( high in diet linseed oil food product compared to control diet in ovis aries sheep lamb child rumen ireland farm age 100 days )2019-02-26v4No1 / 4
329amnondominant ovis aries, sheep, kingdom of norway, rumen2018-05-13v4No1 / 4
551amnondominant egypt, camel, camelus dromedarius, rumen, adult2019-08-27v3No1 / 7
687amnondominant shandong province, bos taurus, chinese bohai black beef cattle, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 8
701amnondominant municipality of beijing, research facility, china, male, male organism, age 2 years, rumen liquid, rumen, bos taurus, cow2028-04-01v3No1 / 8
735amnondominant control, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 8
687amnondominant chinese luxi yellow beef cattle, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 9
687amnon high in chinese bohai black beef cattle compared to chinese luxi yellow beef cattle in bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 10
735amnondominant restricted feed, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 10
787amnondominant control, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat2021-05-23v3No1 / 11
737amnondominant ruminal fluid, rumen, hainan autonomous prefecture, age 2 months, research facility, hainan black goat, china, goat, capra hircus2021-01-27v3No1 / 11
657amnondominant research facility, china, qinghai province, rumen liquid, rumen, age < 1 year, lamb, sheep, ovis aries2020-09-13v4No1 / 12
27amnondominant bos grunniens, rumen, china2016-12-05v4No1 / 12
82amnonhigh freq. in dairy cow rumen fluid (dominant bos taurus, sweden, rumen)2017-03-05v4No1 / 12
748amnondominant jersey cow, ruminal fluid, rumen, united states of america, state of mississippi, research facility, female organism, bos taurus, cow2021-03-10v4No1 / 14
657amnonnegatively correlated with age ( high in younger age compared to age older age in research facility china qinghai province rumen liquid rumen age < 1 year lamb sheep ovis aries )2020-09-13v4No1 / 14
687amnondominant holstein dairy cow, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 14
687amnondominant chinese laoshan milk goat, capra hircus, goat, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 15
787amnoncommon in high grain diet induced subacute acidosis (dominant acidosis, subacute rumen acidosis, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat)2021-05-23v3No1 / 15
748amnondominant holstein dairy cow, ruminal fluid, rumen, united states of america, state of mississippi, research facility, female organism, bos taurus, cow2021-03-10v4No1 / 16
491amnondominant ovis aries, sheep, lamb, child, rumen, ireland, farm, age 100 days2019-02-26v4No1 / 16
83amnondominant bos taurus, rumen, holstein-friesian bull, ireland2017-03-05v4No1 / 16
363amnondominant ovis aries, age 30 days, obsolete_juvenile stage, italy, dairy, rumen, ruminant reticulum, omasum2018-08-29v4No1 / 18
561amnon high in winter withered grass diet compared to spring green stage diet in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 18
111amnondominant rumen, ruminant reticulum, omasum, mongolian sheep, ovis aries, china2017-04-09v4No1 / 18
739amnondominant age 5 years, goat, capra hircus, creole goat, research facility, ruminal fluid, rumen, argentina2021-01-30v4No1 / 18
261amnondominant bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 19
439amnondominant bos grunniens, yak, rumen, farm, china2018-12-31v4No1 / 20
687amnon high in chinese luxi yellow beef cattle compared to chinese bohai black beef cattle in bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 34
561amnon high in spring green stage diet compared to withered grass diet winter in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 35
687amnon high in high milk yield compared to low milk yield in holstein dairy cow bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 40
83amnonhigher in rumen liquids compared to solids in normal diet cows ( high in rumen liquid compared to rumen solids in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 40
439amnoncommon bos grunniens, yak, rumen, farm, china2018-12-31v4No1 / 52
657amnonpostively correlated with age ( high in older age age compared to younger age in research facility china qinghai province rumen liquid rumen age < 1 year lamb sheep ovis aries )2020-09-13v4No1 / 65
735amnon high in restricted feed compared to control in research facility nanjing city prefecture china pregnancy digesta rumen female organism female sheep ovis aries 2021-01-22v3No1 / 65
83amnonhigher in rumen solids compared to liquid in normal diet cows ( high in rumen solids compared to rumen liquid in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 67
83amnonhigher in earlier timepoint (yonger age) in cow rumen normal diet ( high in 605 days age compared to 660 days in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 80
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 83
787amnonhigher in first 2 hours compared to 5-6 hours following eating ( high in 1-2 hours compared to 5-6 hours in capra hircus goat china research facility ruminal fluid rumen shanxi province dairy goat )2021-05-23v3No1 / 96
363amnon high in caecum colon rectum compared to rumen ruminant reticulum omasum in ovis aries age 30 days obsolete_juvenile stage italy dairy 2018-08-29v4No1 / 101
787amnonlower in first 2 hours compared to 5-6 hours following eating ( high in 5-6 hours compared to 1-2 hours in dairy goat shanxi province rumen ruminal fluid research facility china goat capra hircus )2021-05-23v3No1 / 101
491amnoncommon ovis aries, sheep, lamb, child, rumen, ireland, farm, age 100 days2019-02-26v4No1 / 105
735amnon high in control compared to restricted feed in research facility nanjing city prefecture china pregnancy digesta rumen female organism female sheep ovis aries 2021-01-22v3No1 / 112
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 113
551amnon high in fresh clover diet compared to clover hay diet in egypt camel camelus dromedarius rumen adult 2019-08-27v3No1 / 136
787amnonhigher in excess grain induced rumen acidosis compared to healthy controls ( high in subacute rumen acidosis acidosis compared to control in dairy goat shanxi province rumen ruminal fluid research facility china goat capra hircus )2021-05-23v3No1 / 207
83amnonhigher in later timepoint (older age) in cow rumen normal diet ( high in age 660 days compared to 605 days in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 248
111amnoncommon rumen, ruminant reticulum, omasum, mongolian sheep, ovis aries, china2017-04-09v4No1 / 253
561amnon high in grass growth diet summer compared to spring green stage diet in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 256
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 266
551amnon high in diet clover hay diet compared to fresh clover diet in egypt camel camelus dromedarius rumen adult 2019-08-27v3No1 / 291
561amnon high in grass growth diet summer compared to withered grass diet winter in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 294
111amnon high in rumen ruminant reticulum omasum compared to rectum ileum caecum colon in mongolian sheep ovis aries china 2017-04-09v4No1 / 294
737amnoncommon ruminal fluid, rumen, hainan autonomous prefecture, age 2 months, research facility, hainan black goat, china, goat, capra hircus2021-01-27v3No1 / 295
363amnoncommon ovis aries, age 30 days, obsolete_juvenile stage, italy, dairy, rumen, ruminant reticulum, omasum2018-08-29v4No1 / 302
687amnon high in chinese laoshan milk goat goat capra hircus compared to chinese bohai black beef cattle chinese luxi yellow beef cattle bos taurus in shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 318
561amnon high in winter withered grass diet compared to grass growth diet summer in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 357
363amnon high in rumen ruminant reticulum omasum compared to caecum colon rectum in ovis aries age 30 days obsolete_juvenile stage italy dairy 2018-08-29v4No1 / 360
551amnoncommon egypt, camel, camelus dromedarius, rumen, adult2019-08-27v3No1 / 370
687amnon high in low milk yield compared to high milk yield in holstein dairy cow bos taurus shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 375
739amnoncommon age 5 years, goat, capra hircus, creole goat, research facility, ruminal fluid, rumen, argentina2021-01-30v4No1 / 392
561amnon high in spring green stage diet compared to summer grass growth diet in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 397
687amnoncommon chinese laoshan milk goat, capra hircus, goat, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 429
787amnoncommon in high grain diet induced subacute acidosis (common acidosis, subacute rumen acidosis, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat)2021-05-23v3No1 / 463
111amnon high in rectum caecum ileum colon compared to rumen ruminant reticulum omasum in mongolian sheep ovis aries china 2017-04-09v4No1 / 464
787amnonlower in excess grain induced rumen acidosis compared to healthy controls ( high in control compared to acidosis subacute rumen acidosis in dairy goat shanxi province rumen ruminal fluid research facility china goat capra hircus )2021-05-23v3No1 / 504
329amnoncommon ovis aries, sheep, kingdom of norway, rumen2018-05-13v4No1 / 506
657amnoncommon research facility, china, qinghai province, rumen liquid, rumen, age < 1 year, lamb, sheep, ovis aries2020-09-13v4No1 / 517
27amnoncommon bos grunniens, rumen, china2016-12-05v4No1 / 532
687amnoncommon holstein dairy cow, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 593
748amnon high in jersey cow compared to holstein dairy cow in ruminal fluid rumen united states of america state of mississippi research facility female organism bos taurus cow 2021-03-10v4No1 / 603
748amnoncommon holstein dairy cow, ruminal fluid, rumen, united states of america, state of mississippi, research facility, female organism, bos taurus, cow2021-03-10v4No1 / 614
748amnoncommon jersey cow, ruminal fluid, rumen, united states of america, state of mississippi, research facility, female organism, bos taurus, cow2021-03-10v4No1 / 632
748amnon high in holstein dairy cow compared to jersey cow in ruminal fluid rumen united states of america state of mississippi research facility female organism bos taurus cow 2021-03-10v4No1 / 638
561amnoncommon bos grunniens, yak, china, tibetan plateau, alpine meadow, rumen, ruminal fluid2019-11-05v3No1 / 670
787amnoncommon control, capra hircus, goat, china, research facility, ruminal fluid, rumen, shanxi province, dairy goat2021-05-23v3No1 / 700
735amnoncommon restricted feed, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 744
83amnoncommon bos taurus, rumen, holstein-friesian bull, ireland2017-03-05v4No1 / 757
735amnoncommon control, research facility, nanjing city prefecture, china, pregnancy, digesta, rumen, female organism, female, sheep, ovis aries2021-01-22v3No1 / 761
701amnoncommon municipality of beijing, research facility, china, male, male organism, age 2 years, rumen liquid, rumen, bos taurus, cow2028-04-01v3No1 / 953
687amnon high in chinese bohai black beef cattle chinese luxi yellow beef cattle bos taurus compared to chinese laoshan milk goat goat capra hircus in shandong province research facility china rumen liquid rumen 2028-03-09v4No1 / 1022
83amnon high in diet control normal diet compared to restricted diet in bos taurus rumen holstein-friesian bull ireland 2017-03-05v4No1 / 1023
687amnoncommon chinese luxi yellow beef cattle, bos taurus, shandong province, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 1039
687amnoncommon shandong province, bos taurus, chinese bohai black beef cattle, research facility, china, rumen liquid, rumen2028-03-09v4No1 / 1147
82amnoncommon in dairy cow rumen fluid (common bos taurus, sweden, rumen)2017-03-05v4No1 / 1322
83amnon high in restricted feed diet compared to control normal feed in bos taurus rumen holstein-friesian bull ireland 2017-03-05v4No1 / 1735
748amnon high in feces compared to ruminal fluid rumen in united states of america state of mississippi research facility female organism bos taurus cow 2021-03-10v4No1 / 2467
748amnon high in ruminal fluid rumen compared to feces in united states of america state of mississippi research facility female organism bos taurus cow 2021-03-10v4No1 / 2716

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