Summary for ontology term: rumen

Number of annotations with term: 45

Annotations:

common ontology terms
term enrichment score
TermScore
rumen0.935707
ovis aries0.424242
bos grunniens0.417112
yak0.357724
ireland0.347826
bos taurus0.305455
ruminal fluid0.262295
alpine meadow0.262295
holstein-friesian bull0.262295
ruminant reticulum0.222222
omasum0.222222
sheep0.210526
tibetan plateau0.172043
age 30 days0.150943
dairy0.150943
mongolian sheep0.150943
lamb0.150943
age 100 days0.150943
camel0.150943
camelus dromedarius0.150943
diet0.148148
state of nebraska0.140351
egypt0.123077
LOWER IN ruminant reticulum0.122449
LOWER IN omasum0.122449
cow0.115942
farm0.114754
italy0.098765
obsolete_juvenile stage0.094118
LOWER IN rumen0.083333
china0.082826
LOWER IN grass growth diet0.081633
green stage diet0.081633
LOWER IN green stage diet0.081633
grass growth diet0.081633
LOWER IN withered grass diet0.081633
withered grass diet0.081633
LOWER IN rectum0.078431
rectum0.074074
LOWER IN caecum0.072727
LOWER IN spring0.072727
LOWER IN colon0.067797
spring0.067797
child0.066116
sweden0.065574
kingdom of norway0.065574
colon0.062500
caecum0.059701
LOWER IN winter0.054795
winter0.053333
LOWER IN summer0.050633
summer0.050633
age0.048193
abomasum0.042553
linseed oil food product0.042553
LOWER IN linseed oil food product0.042553
restricted feed0.042553
LOWER IN normal feed0.042553
LOWER IN restricted diet0.042553
660 days0.042553
LOWER IN 605 days0.042553
605 days0.042553
LOWER IN 660 days0.042553
rumen liquid0.042553
LOWER IN rumen solids0.042553
rumen solids0.042553
LOWER IN rumen liquid0.042553
corn diet0.042553
40mdgs diet0.042553
LOWER IN 27cds diet0.042553
LOWER IN 55cs diet0.042553
27cds diet0.042553
55cs diet0.042553
LOWER IN corn diet0.042553
LOWER IN 40mdgs diet0.042553
LOWER IN fresh clover diet0.042553
clover hay diet0.042553
fresh clover diet0.042553
LOWER IN clover hay diet0.042553
normal diet0.040000
LOWER IN control diet0.038462
control diet0.038462
LOWER IN ileum0.037736
ileum0.037736
adult0.022663
LOWER IN control0.012195
control0.012121
united states of america0.010191
Fraction of dbbact annotations with this term covered by the query
TermScore
rumen0.916667
bos grunniens0.750000
LOWER IN ruminant reticulum0.750000
LOWER IN omasum0.750000
ovis aries0.666667
ruminant reticulum0.666667
omasum0.666667
yak0.666667
LOWER IN rumen0.666667
age 30 days0.500000
dairy0.500000
ruminal fluid0.500000
alpine meadow0.500000
LOWER IN grass growth diet0.500000
green stage diet0.500000
mongolian sheep0.500000
LOWER IN green stage diet0.500000
grass growth diet0.500000
LOWER IN withered grass diet0.500000
abomasum0.500000
sheep0.500000
lamb0.500000
ireland0.500000
age 100 days0.500000
linseed oil food product0.500000
LOWER IN linseed oil food product0.500000
holstein-friesian bull0.500000
restricted feed0.500000
LOWER IN normal feed0.500000
LOWER IN restricted diet0.500000
660 days0.500000
LOWER IN 605 days0.500000
605 days0.500000
LOWER IN 660 days0.500000
rumen liquid0.500000
LOWER IN rumen solids0.500000
rumen solids0.500000
LOWER IN rumen liquid0.500000
corn diet0.500000
40mdgs diet0.500000
LOWER IN 27cds diet0.500000
LOWER IN 55cs diet0.500000
27cds diet0.500000
55cs diet0.500000
LOWER IN corn diet0.500000
LOWER IN 40mdgs diet0.500000
camel0.500000
camelus dromedarius0.500000
LOWER IN fresh clover diet0.500000
clover hay diet0.500000
fresh clover diet0.500000
LOWER IN clover hay diet0.500000
withered grass diet0.500000
LOWER IN rectum0.333333
state of nebraska0.333333
bos taurus0.300000
rectum0.222222
LOWER IN caecum0.200000
LOWER IN spring0.200000
normal diet0.200000
egypt0.200000
tibetan plateau0.166667
diet0.166667
cow0.166667
LOWER IN colon0.142857
spring0.142857
LOWER IN control diet0.142857
control diet0.142857
LOWER IN ileum0.125000
ileum0.125000
sweden0.125000
kingdom of norway0.125000
italy0.111111
colon0.105263
obsolete_juvenile stage0.100000
caecum0.090909
farm0.090909
LOWER IN winter0.071429
winter0.066667
LOWER IN summer0.058824
summer0.058824
child0.052632
age0.052632
china0.046512
adult0.012987
LOWER IN control0.008403
control0.008333
united states of america0.005405
Fraction of annotations for the query sequences containing the term
TermScore
rumen0.955556
china0.377778
ovis aries0.311111
bos taurus0.311111
bos grunniens0.288889
ireland0.266667
yak0.244444
ruminal fluid0.177778
alpine meadow0.177778
tibetan plateau0.177778
holstein-friesian bull0.177778
farm0.155556
ruminant reticulum0.133333
omasum0.133333
sheep0.133333
diet0.133333
age 30 days0.088889
obsolete_juvenile stage0.088889
italy0.088889
dairy0.088889
mongolian sheep0.088889
lamb0.088889
child0.088889
age 100 days0.088889
cow0.088889
united states of america0.088889
state of nebraska0.088889
egypt0.088889
camel0.088889
camelus dromedarius0.088889
adult0.088889
LOWER IN ruminant reticulum0.066667
LOWER IN omasum0.066667
LOWER IN caecum0.044444
LOWER IN colon0.044444
LOWER IN rectum0.044444
LOWER IN grass growth diet0.044444
LOWER IN summer0.044444
spring0.044444
green stage diet0.044444
caecum0.044444
colon0.044444
rectum0.044444
LOWER IN rumen0.044444
LOWER IN spring0.044444
LOWER IN green stage diet0.044444
summer0.044444
grass growth diet0.044444
LOWER IN winter0.044444
LOWER IN withered grass diet0.044444
sweden0.044444
age0.044444
kingdom of norway0.044444
withered grass diet0.044444
winter0.044444
LOWER IN ileum0.022222
ileum0.022222
abomasum0.022222
LOWER IN control diet0.022222
linseed oil food product0.022222
control diet0.022222
LOWER IN linseed oil food product0.022222
restricted feed0.022222
LOWER IN control0.022222
LOWER IN normal feed0.022222
control0.022222
LOWER IN restricted diet0.022222
normal diet0.022222
660 days0.022222
LOWER IN 605 days0.022222
605 days0.022222
LOWER IN 660 days0.022222
rumen liquid0.022222
LOWER IN rumen solids0.022222
rumen solids0.022222
LOWER IN rumen liquid0.022222
corn diet0.022222
40mdgs diet0.022222
LOWER IN 27cds diet0.022222
LOWER IN 55cs diet0.022222
27cds diet0.022222
55cs diet0.022222
LOWER IN corn diet0.022222
LOWER IN 40mdgs diet0.022222
LOWER IN fresh clover diet0.022222
clover hay diet0.022222
fresh clover diet0.022222
LOWER IN clover hay diet0.022222
Exp. ID User ID Description Date Region Flag Sequences
491amnonlower in lambs fed linseed oil supplemented diet compared to control diet ( high in control diet compared to linseed oil food product in ovis aries sheep lamb child rumen ireland farm age 100 days )2019-02-26v4No1 / 1
439amnonpresent only in abomasum in yak rumen ( high in abomasum compared to omasum ruminant reticulum in bos grunniens yak rumen farm china )2018-12-31v4No1 / 2
561amnonhighfreq ruminal fluid, rumen, alpine meadow, tibetan plateau, china, yak, bos grunniens2019-11-05v3No1 / 3
491amnonhigher in lambs fed linseed oil supplemented diet compared to control diet ( high in diet linseed oil food product compared to control diet in ovis aries sheep lamb child rumen ireland farm age 100 days )2019-02-26v4No1 / 4
329amnonhighfreq ovis aries, sheep, kingdom of norway, rumen2018-05-13v4No1 / 4
551amnonhighfreq egypt, camel, camelus dromedarius, rumen, adult2019-08-27v3No1 / 7
82amnonhigh freq. in dairy cow rumen fluid (highfreq bos taurus, sweden, rumen)2017-03-05v4No1 / 12
27amnonhighfreq bos grunniens, rumen, china2016-12-05v4No1 / 12
491amnonhighfreq ovis aries, sheep, lamb, child, rumen, ireland, farm, age 100 days2019-02-26v4No1 / 16
83amnonhighfreq bos taurus, rumen, holstein-friesian bull, ireland2017-03-05v4No1 / 16
363amnonhighfreq ovis aries, age 30 days, obsolete_juvenile stage, italy, dairy, rumen, ruminant reticulum, omasum2018-08-29v4No1 / 18
111amnonhighfreq rumen, ruminant reticulum, omasum, mongolian sheep, ovis aries, china2017-04-09v4No1 / 18
561amnon high in withered grass diet winter compared to green stage diet spring in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 18
261amnonhighfreq bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 19
439amnonhighfreq bos grunniens, yak, rumen, farm, china2018-12-31v4No1 / 20
561amnon high in spring green stage diet compared to winter withered grass diet in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 35
83amnonhigher in rumen liquids compared to solids in normal diet cows ( high in rumen liquid compared to rumen solids in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 40
439amnoncommon bos grunniens, yak, rumen, farm, china2018-12-31v4No1 / 52
83amnonhigher in rumen solids compared to liquid in normal diet cows ( high in rumen solids compared to rumen liquid in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 67
83amnonhigher in earlier timepoint (yonger age) in cow rumen normal diet ( high in 605 days age compared to 660 days in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 80
261amnondiet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 83
363amnon high in caecum colon rectum compared to rumen ruminant reticulum omasum in ovis aries age 30 days obsolete_juvenile stage italy dairy 2018-08-29v4No1 / 101
491amnoncommon ovis aries, sheep, lamb, child, rumen, ireland, farm, age 100 days2019-02-26v4No1 / 105
261amnondiet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in bos taurus cow rumen united states of america state of nebraska )2017-12-10v4No1 / 113
551amnon high in fresh clover diet compared to clover hay diet in egypt camel camelus dromedarius rumen adult 2019-08-27v3No1 / 136
83amnonhigher in later timepoint (older age) in cow rumen normal diet ( high in age 660 days compared to 605 days in bos taurus rumen holstein-friesian bull ireland )2017-03-05v4No1 / 248
111amnoncommon rumen, ruminant reticulum, omasum, mongolian sheep, ovis aries, china2017-04-09v4No1 / 253
561amnon high in summer grass growth diet compared to spring green stage diet in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 256
261amnoncommon bos taurus, cow, rumen, united states of america, state of nebraska2017-12-10v4No1 / 266
551amnon high in diet clover hay diet compared to fresh clover diet in egypt camel camelus dromedarius rumen adult 2019-08-27v3No1 / 291
111amnon high in rumen ruminant reticulum omasum compared to rectum ileum caecum colon in mongolian sheep ovis aries china 2017-04-09v4No1 / 294
561amnon high in summer grass growth diet compared to winter withered grass diet in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 294
363amnoncommon ovis aries, age 30 days, obsolete_juvenile stage, italy, dairy, rumen, ruminant reticulum, omasum2018-08-29v4No1 / 302
561amnon high in withered grass diet winter compared to summer grass growth diet in bos grunniens yak china tibetan plateau alpine meadow rumen ruminal fluid 2019-11-05v3No1 / 357
363amnon high in rumen ruminant reticulum omasum compared to caecum colon rectum in ovis aries age 30 days obsolete_juvenile stage italy dairy 2018-08-29v4No1 / 360
551amnoncommon egypt, camel, camelus dromedarius, rumen, adult2019-08-27v3No1 / 370
561amnon high in spring green stage diet compared to grass growth diet summer in ruminal fluid rumen alpine meadow tibetan plateau china yak bos grunniens 2019-11-05v3No1 / 397
111amnon high in rectum caecum ileum colon compared to rumen ruminant reticulum omasum in mongolian sheep ovis aries china 2017-04-09v4No1 / 464
329amnoncommon ovis aries, sheep, kingdom of norway, rumen2018-05-13v4No1 / 506
27amnoncommon bos grunniens, rumen, china2016-12-05v4No1 / 532
561amnoncommon ruminal fluid, rumen, alpine meadow, tibetan plateau, china, yak, bos grunniens2019-11-05v3No1 / 670
83amnoncommon bos taurus, rumen, holstein-friesian bull, ireland2017-03-05v4No1 / 757
83amnon high in diet control normal diet compared to restricted diet in bos taurus rumen holstein-friesian bull ireland 2017-03-05v4No1 / 1023
82amnoncommon in dairy cow rumen fluid (common bos taurus, sweden, rumen)2017-03-05v4No1 / 1322
83amnon high in restricted feed diet compared to control normal feed in bos taurus rumen holstein-friesian bull ireland 2017-03-05v4No1 / 1735

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