Summary for ontology term: san diego

Number of annotations with term: 32

Annotations:

common ontology terms
Fraction of dbbact annotations with this term covered by the query
TermScore
san diego1.000000
periodontal pocket0.500000
chub mackerel0.500000
scomber japonicus0.500000
epidermis0.500000
alimentary part of gastrointestinal system0.500000
actinopterygian pyloric caecum0.500000
LOWER IN epidermis0.500000
LOWER IN alimentary part of gastrointestinal system0.500000
LOWER IN gastrointestinal system0.500000
LOWER IN digesta0.500000
LOWER IN chub mackerel0.500000
LOWER IN scomber japonicus0.500000
LOWER IN gill0.333333
digesta0.250000
gill0.250000
LOWER IN saline water0.250000
LOWER IN marine sediment0.200000
gastrointestinal system0.166667
LOWER IN sediment0.166667
supragingival plaque0.142857
LOWER IN skin0.125000
LOWER IN sea water0.125000
LOWER IN periodontitis0.111111
periodontitis0.111111
saline water0.111111
subgingival plaque0.100000
surface water0.100000
LOWER IN water0.076923
fish0.071429
marine sediment0.066667
LOWER IN winter0.066667
winter0.062500
pacific ocean0.055556
LOWER IN feces0.055556
LOWER IN summer0.055556
dentition0.052632
summer0.052632
mouth0.045455
sediment0.041667
skin0.034483
sea water0.032258
water0.018868
LOWER IN control0.006944
control0.006897
homo sapiens0.005025
united states of america0.004739
feces0.004049
Fraction of annotations for the query sequences containing the term
TermScore
san diego1.000000
pacific ocean0.812500
chub mackerel0.593750
scomber japonicus0.593750
fish0.562500
homo sapiens0.187500
united states of america0.187500
dentition0.187500
mouth0.187500
gill0.187500
periodontal pocket0.125000
subgingival plaque0.125000
skin0.125000
gastrointestinal system0.125000
alimentary part of gastrointestinal system0.125000
saline water0.125000
water0.125000
sea water0.125000
feces0.093750
digesta0.093750
epidermis0.093750
marine sediment0.093750
sediment0.093750
supragingival plaque0.062500
actinopterygian pyloric caecum0.062500
surface water0.062500
LOWER IN skin0.062500
LOWER IN gill0.062500
LOWER IN alimentary part of gastrointestinal system0.062500
LOWER IN gastrointestinal system0.062500
LOWER IN saline water0.062500
LOWER IN sea water0.062500
LOWER IN water0.062500
control0.031250
LOWER IN periodontitis0.031250
LOWER IN control0.031250
periodontitis0.031250
LOWER IN epidermis0.031250
LOWER IN feces0.031250
LOWER IN digesta0.031250
LOWER IN chub mackerel0.031250
LOWER IN scomber japonicus0.031250
LOWER IN marine sediment0.031250
LOWER IN sediment0.031250
LOWER IN winter0.031250
summer0.031250
LOWER IN summer0.031250
winter0.031250
Exp. ID User ID Description Date Region Flag Sequences
642amnoncommon epidermis, skin, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 5
642amnondominant marine sediment, sediment, san diego, pacific ocean2020-08-28v4No1 / 5
642amnoncommon gastrointestinal system, alimentary part of gastrointestinal system, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 6
642amnoncommon actinopterygian pyloric caecum, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 6
642amnondominant epidermis, skin, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 7
642amnoncommon saline water, surface water, water, sea water, san diego, pacific ocean2020-08-28v4No1 / 9
642amnondominant gill, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 11
642amnondominant gastrointestinal system, alimentary part of gastrointestinal system, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 11
642amnondominant san diego, pacific ocean, chub mackerel, scomber japonicus, feces, digesta, fish2020-08-28v4No1 / 12
642amnondominant saline water, surface water, water, sea water, san diego, pacific ocean2020-08-28v4No1 / 12
642amnoncommon gill, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 13
642amnondominant actinopterygian pyloric caecum, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 13
162amnon high in control compared to periodontitis in homo sapiens united states of america san diego dentition subgingival plaque periodontal pocket mouth 2017-07-13v4No1 / 15
642amnoncommon san diego, pacific ocean, chub mackerel, scomber japonicus, feces, digesta, fish2020-08-28v4No1 / 17
162amnonhigh freq. in periodontal pocket in humans (dominant homo sapiens, united states of america, san diego, dentition, subgingival plaque, periodontal pocket, mouth)2017-07-13v4No1 / 19
162amnonhigh freq. in supragingival plaque in humans (dominant homo sapiens, united states of america, san diego, dentition, supragingival plaque, mouth)2017-07-13v4No1 / 20
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to feces digesta in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 20
642amnon high in winter compared to summer in gill fish scomber japonicus chub mackerel san diego pacific ocean 2020-08-28v4No1 / 36
162amnon high in periodontitis compared to control in homo sapiens united states of america san diego dentition subgingival plaque periodontal pocket mouth 2017-07-13v4No1 / 52
642amnon high in water saline water sea water compared to marine sediment sediment in san diego pacific ocean 2020-08-28v4No1 / 55
642amnon high in summer compared to winter in gill fish scomber japonicus chub mackerel san diego pacific ocean 2020-08-28v4No1 / 61
162amnoncommon in periodontal pocket in humans (common homo sapiens, united states of america, dentition, san diego, periodontal pocket, subgingival plaque, mouth)2017-07-13v4No1 / 66
642amnon high in chub mackerel scomber japonicus skin compared to saline water sea water water in san diego pacific ocean 2020-08-28v4No1 / 66
162amnoncommon in supragingival plaque in humans (common homo sapiens, united states of america, san diego, dentition, supragingival plaque, mouth)2017-07-13v4No1 / 85
642amnon high in skin epidermis compared to gill in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 99
642amnon high in saline water water sea water compared to chub mackerel scomber japonicus skin in san diego pacific ocean 2020-08-28v4No1 / 102
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to gill in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 110
642amnon high in gill compared to epidermis skin in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 279
642amnoncommon marine sediment, sediment, san diego, pacific ocean2020-08-28v4No1 / 403
642amnon high in gill compared to alimentary part of gastrointestinal system gastrointestinal system in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 433
642amnon high in feces digesta compared to gastrointestinal system alimentary part of gastrointestinal system in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 627
642amnon high in marine sediment sediment compared to saline water sea water water in san diego pacific ocean 2020-08-28v4No1 / 3216

Problems / suggestions? Please email info AT dbbact DOT org