Summary for ontology term: surface

Number of annotations with term: 14

Top positive-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__RhizobialesTACGAAGGGGGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACTCTTAAGTCAGGGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTTTGATACTGTGAGTCTCGAGACCGGAAGAGGTGAGTGGAATTCCTAG0.076923
d__Bacteria;p__"Acidobacteria";c__Acidobacteria_Gp1TGGGGAATTTTGCGCAATGGGGGAAACCCTGACGCAGCAACGCCGCGTGGAGGATGAAGCCCCTTGGGGTGTAAACTCCTTTCGATCGGGAAGATAATGACGGTACCGATATAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTA0.076923
d__Bacteria;p__"Bacteroidetes";c__Cytophagia;o__CytophagalesTACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTATTAAGTCAGTGGTGAAAGACGATAGCTCAACTATCGAGGTGCCATTGATACTGATGAACTTGAGTGCACACGAGGTAAGCGGAATGGACGG0.076923
d__Bacteria;p__"Proteobacteria";c__Betaproteobacteria;o__BurkholderialesTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGCGGGAAGAAGGCCTTCGGGTTGTAAACCGCTTTTGTCAGGGAAGAAAAGCTCCGGGCTAATACCTTGGAGTCATGACGGTACCTGAAGAATAAGCACCGGC0.076923
d__BacteriaTACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCGCCTAAGTCAGTTGTGAAATACCCCGGCTCAACCGGGGGGGTGCGATTGATACTGGGCGGCTCGAGTAACAGCGAGGTTGGCGGAATTGACGG0.076923
d__Bacteria;p__"Actinobacteria";c__ActinobacteriaTGGGGAATCTTGCACAATGGGCGAAAGCCTGATGCAGCAACGCCGCGTGAGGGACGAAGGCTTTCTGAGTTGTAAACCTCTTTCAGCAGGGACGATTGTGACGGTACCTGCAGAAGAAGCCCCGGCCAACTACGTGCCAGCAGCCGCGGT0.076923
d__Bacteria;p__"Gemmatimonadetes";c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__GemmatimonasTACGGAGGGTGCGAGCGTTGTCCGGAATCACTGGGCGTAAAGGGCGCGTAGGCGGTCTGCTAAGCGTGTGGTGAAAGCTCGGGGCTCAACCCCGAGTCTGCCATGCGAACTGGTGGACTTGAGCACTGTAGAGGCAGGTGGAATTCCGGG0.076923
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Actinomycetales;f__Pseudonocardiaceae;g__PseudonocardiaTGGGGAATATTGCGCAATGGGCGGAAGCCTGACGCAGCGACGCCGCGTGGGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCGACCTTGACGAAGCCTTCGGGTGACGGTAGGGGTAGAAGAAGCACCGGCCAACTACGTGCCAGCAGC0.076923
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Rhodospirillales;f__Acetobacteraceae;g__StellaTACGAAGGGGGCTAGCGTTGTTCGGAATGACTGGGCGTAAAGGGCGCGTAGGCGGCGCATCAAGTCGGGCGTGAAAGCCCCGGGCTCAACCTGGGAACGGCGTCCGGGACTGATGTGCTGGAGTTCGGGAGAGGAGAGTGGAATTCCCAG0.076923
d__Bacteria;p__"Acidobacteria";c__Acidobacteria_Gp6;g__Gp6TACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCAACTAAGTCAGACGTGAAATCCCTCAGCTCAACTGGGGAACTGCGTCTGATACTGGTTGGCTTGAGTGCAGGAGAGGAACGCGGAATTCCAGG0.076923

Top negative-associated sequence

Taxonomy Sequence Recall
d__Bacteria;p__"Acidobacteria";c__Acidobacteria_Gp4TACGTAGGGAGCAAGCGTTGTTCGGATTTACTGGGCGTAAAGGGCGCGTAGGCGGCGCGACAAGTCACTTGTGAAATCTCCGGGCTTAACTCGGAACGGCCAAGTGAAACTGTCATGCTAGAGTGCAGAAGGGGCAATCGGAATTCTTGG0.333333
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__EnhydrobacterTGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGCCTTTTGGTTGTAAAGCACTTTAAGCAGGGAGGAGAGGCTAATGGTTAATACCCATTAGATTAGACGTTACCTGCAGAATAAGCACCGGC0.333333
d__Bacteria;p__"Proteobacteria";c__Betaproteobacteria;o__Neisseriales;f__NeisseriaceaeTGGGGAATTTTGGACAATGGGGGAAACCCTGATCCAGCCATGCCGCGTGTATGAAGAAGGCCTTAGGGTTGTAAAGTACTTTTGTTAGGGAAGAAAAGCTAGTTTTTAATAAAAATTAGTGATGACGGTACCTAAAGAATAAGCACCGGC0.333333
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Actinomycetales;f__Propionibacteriaceae;g__PropionibacteriumTGGGGAATATTGCACAATGGGCGGAAGCCTGATGCAGCAACGCCGCGTGCGGGATGACGGCCTTCGGGTTGTAAACCGCTTTCGCCTGTGACGAAGCGTGAGTGACGGTAATGGGTAAAGAAGCACCGGCTAACTACGTGCCAGCAGCCG0.333333
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Actinomycetales;f__Corynebacteriaceae;g__CorynebacteriumTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCGTGGGGGATGACGGCCTTCGGGTTGTAAACTCCTTTCGCTAGGGACGAAGCTTTTTGTGACGGTACCTAGATAAGAAGCACCGGCTAACTACGTGCCAGCAGCC0.333333
d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__StaphylococcusTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGTGATGAAGGTCTTCGGATCGTAAAACTCTGTTATTAGGGAAGAACAAATGTGTAAGTAACTATGCACGTCTTGACGGTACCTAATCAGAAAGCCACGGC0.333333
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Enterobacteriales";f__Enterobacteriaceae;g__Escherichia/ShigellaTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGC0.333333
d__Bacteria;p__"Proteobacteria";c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__DelftiaTGGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGCAGGATGAAGGCCTTCGGGTTGTAAACTGCTTTTGTACGGAACGAAAAAGCTTCTCCTAATACGAGAGGCCCATGACGGTACCGTAAGAATAAGCACCGGC0.333333
d__Bacteria;p__"Proteobacteria";c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__PelomonasTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGCGGGAAGAAGGCCTTCGGGTTGTAAACCGCTTTTGTCAGGGAAGAAAAGGTTCTGGCTAATACCTGGGACTCATGACGGTACCTGAAGAATAAGCACCGGC0.333333
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Rhizobiales;f__Bradyrhizobiaceae;g__BradyrhizobiumTGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTA0.333333

Top COMMON/DOMINANT/HIGH sequence

Taxonomy Sequence F-Score
d__BacteriaTACAGAGGTCCCAAGCGTTGTTCGGATTCATTGGGCGTAAAGGGTGCGTAGGTGGCATGGTAAGTCGGGTGTGAAATCCCGGGGCTCAACCCCGGAACTGCACTCGATACTACCGTGCTTGAGTACTAGAGAGGAGACTGGAATTTACGG0.352941
d__BacteriaTACGGAGGGGGCCAGCGTTGTTCGGAATCATTGGGCGTAAAGGGCGCCTAGGTGGCCAAGCAAGTCGGACGTGAAAGCCCCCGGCTCAACCGGGGAATTGCATCCGAAACTGCTAGGCTTGAGTCCTGGAGAGGGTAGCGGAATTCCCAG0.352941
d__Bacteria;p__"Proteobacteria";c__DeltaproteobacteriaTACGGAGGGTGCAAACGTTGCTCGGAATCATTGGGCGTAAAGCGCACGTAGGCGGCGCGAAAAGTCAGGTGTGAAAGCCCTCGGCTTAACCGAGGAAGTGCACTTGAAACTTTCGGGCTTGAGTACAGAAGAGGGTCTCGGAATTCCCGG0.352941
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Sphingomonadales;f__SphingomonadaceaeTACGGAGGGGGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGCTTTGTAAGTTAGAGGTGAAAGCCCGGAGCTCAACTCCGGAACTGCCCTTAAAACTGCATCGCTAGAATTGTGGAGAGGTGAGTGGAATTCCGAG0.352941
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Actinomycetales;f__Nocardioidaceae;g__NocardioidesTACGTAGGGTGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTCTGTCGCGTCGGGAGTGAAAACACCGGGCTTAACTCGGTGCTTGCTTTCGATACGGGTGGACTGGAGGCATGCAGGGGAGAACGGAATTCCTGG0.333333
d__BacteriaTACAGAGAGTGCAAACGTTGTTCGGAATTACTGGGCTTAAAGCGCACGTAGGCGGCGCCGCAAGTGAGGGGTGAAAGCCCACGGCTTACCCGTGGAATTGCCTTTCAGACTGCGGTGCTAGAGTGTGGTAGGGGAGAGCGGAACTCCTGG0.333333
d__Bacteria;p__"Gemmatimonadetes";c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__GemmatimonasTACGGAGGGTGCGAGCGTTGTCCGGAATCATTGGGCGTAAAGGGCGCGTAGGTGGCCCGGCAAGCGTGCGGTGAAAGCTCGGGGCTCAACCCCGAGTCGGCCGTGCGAACTGCTGGGCTCGAGCACTGTAGAGGCAGGCGGAATTCCGGG0.333333
d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__ActinomycetalesTACGTAGGGTGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGTTTGTCGCGTCGGCTGTGAAATCTCGGGGCTCAACCCCGAGCCTGCAGTCGATACGGGCAGACTAGAGTGCTGTAGGGGAGACTGGAATTCCTGG0.315789
d__BacteriaTACGTAGGGGGCAAGCGTTGTCCGGATTTACTGGGCGTAAAGAGCGCGTAGGCGGAACGATAAGCGGGGCCGGAAAGCCCCCGGCTCAACCGGGGAAGGGGCCGCGAACTGTCGTTCTTGAGGGGGAGAGAGGAGAGCGGAATTCCTGGT0.285714
d__BacteriaTGGGGAATATTGGGCAATGGACGCAAGTCTGACCCAGCGACGCCGCGTGCGGGATGAAGGCCTTCGGGTTGTAAACCGCTTTCAGCAGGGAAGAAGCGAAAGTGACGGTACCTGCAAAAGAAGCACCGGCTAACTATGTGCCAGCAGCCG0.272727

Annotations:

common ontology terms
term enrichment score
TermScore
surface0.827586
glacier0.470588
denali national park and preserve0.363636
alaska0.307692
debris0.307692
biofilter0.307692
state of wisconsin0.266667
depth 0-20cm0.260870
fish farm0.235294
fruit0.222222
neve yaar0.222222
filtered 0.2um0.210526
LOWER IN surface0.210526
cucumis sativus0.200000
sand0.190476
cucumber0.181818
ice0.129032
top of glacier0.125000
LOWER IN terminus of glacier0.125000
terminus of glacier0.125000
LOWER IN top of glacier0.125000
LOWER IN middle0.125000
LOWER IN bottom0.125000
middle0.125000
bottom0.125000
LOWER IN depth 20-100cm0.125000
LOWER IN subsurface0.125000
depth 20-100cm0.125000
subsurface0.125000
LOWER IN depth 0-20cm0.117647
sweden0.102564
israel0.083333
fresh water0.059701
water0.034188
united states of america0.015238
Fraction of dbbact annotations with this term covered by the query
TermScore
surface0.800000
denali national park and preserve0.500000
top of glacier0.500000
LOWER IN terminus of glacier0.500000
terminus of glacier0.500000
LOWER IN top of glacier0.500000
fruit0.500000
neve yaar0.500000
LOWER IN middle0.500000
LOWER IN bottom0.500000
middle0.500000
bottom0.500000
LOWER IN depth 20-100cm0.500000
LOWER IN subsurface0.500000
depth 20-100cm0.500000
subsurface0.500000
glacier0.400000
LOWER IN surface0.400000
alaska0.333333
debris0.333333
cucumis sativus0.333333
biofilter0.333333
depth 0-20cm0.333333
LOWER IN depth 0-20cm0.333333
cucumber0.250000
state of wisconsin0.250000
fish farm0.200000
filtered 0.2um0.166667
sand0.142857
ice0.083333
sweden0.062500
israel0.058824
fresh water0.033333
water0.018182
united states of america0.007722
Fraction of annotations for the query sequences containing the term
TermScore
surface0.857143
united states of america0.571429
glacier0.571429
alaska0.285714
denali national park and preserve0.285714
debris0.285714
water0.285714
fresh water0.285714
fish farm0.285714
biofilter0.285714
sand0.285714
state of wisconsin0.285714
filtered 0.2um0.285714
ice0.285714
sweden0.285714
depth 0-20cm0.214286
fruit0.142857
israel0.142857
neve yaar0.142857
cucumis sativus0.142857
cucumber0.142857
LOWER IN surface0.142857
top of glacier0.071429
LOWER IN terminus of glacier0.071429
terminus of glacier0.071429
LOWER IN top of glacier0.071429
LOWER IN middle0.071429
LOWER IN bottom0.071429
middle0.071429
bottom0.071429
LOWER IN depth 20-100cm0.071429
LOWER IN subsurface0.071429
LOWER IN depth 0-20cm0.071429
depth 20-100cm0.071429
subsurface0.071429
Number of experiments associating the term to the sequence
TermScore
surface4.000000
united states of america2.000000
glacier2.000000
LOWER IN surface2.000000
alaska1.000000
denali national park and preserve1.000000
debris1.000000
top of glacier1.000000
LOWER IN terminus of glacier1.000000
terminus of glacier1.000000
LOWER IN top of glacier1.000000
fruit1.000000
israel1.000000
neve yaar1.000000
cucumis sativus1.000000
cucumber1.000000
water1.000000
fresh water1.000000
fish farm1.000000
biofilter1.000000
sand1.000000
state of wisconsin1.000000
LOWER IN middle1.000000
LOWER IN bottom1.000000
middle1.000000
bottom1.000000
depth 0-20cm1.000000
filtered 0.2um1.000000
ice1.000000
sweden1.000000
LOWER IN depth 20-100cm1.000000
LOWER IN subsurface1.000000
LOWER IN depth 0-20cm1.000000
depth 20-100cm1.000000
subsurface1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
459amnonhigh freq. in surface in aquaculture biofilter sand (dominant water, fresh water, fish farm, biofilter, sand, united states of america, state of wisconsin, surface)2019-01-12v41 / 13approvedNo
174amnonhigh freq. in debris covered glacier (dominant alaska, united states of america, denali national park and preserve, glacier, surface, debris)2017-07-27v41 / 19approvedNo
662amnondominant in cucumber surface (dominant fruit, surface, cucumber, cucumis sativus, neve yaar, israel)2020-09-22v31 / 19approvedNo
763amnondominant depth 0-20cm, surface, filtered 0.2um, ice, glacier, sweden2021-04-10v31 / 19approvedNo
763amnon high in depth 20-100cm subsurface compared to depth 0-20cm surface in filtered 0.2um ice glacier sweden 2021-04-10v31 / 42approvedNo
763amnon high in depth 0-20cm surface compared to depth 20-100cm subsurface in filtered 0.2um ice glacier sweden 2021-04-10v31 / 43approvedNo
662amnoncommon in cucumber surface (common fruit, israel, neve yaar, cucumis sativus, cucumber, surface)2020-09-22v31 / 49approvedNo
459amnonlower in surface compared to middle and bottom in aquaculture biofilter sand ( high in middle bottom compared to surface in water fresh water fish farm biofilter sand united states of america state of wisconsin )2019-01-12v41 / 89approvedNo
763amnoncommon depth 0-20cm, surface, filtered 0.2um, ice, glacier, sweden2021-04-10v31 / 98approvedNo
174amnoncommon in debris covered glacier (common alaska, united states of america, denali national park and preserve, glacier, surface, debris)2017-07-27v41 / 294approvedNo
174amnonlower farther away from glacier terminus ( high in terminus of glacier compared to top of glacier in alaska united states of america denali national park and preserve glacier surface debris )2017-07-27v41 / 310approvedNo
174amnonhigher farther away from glacier terminus ( high in top of glacier compared to terminus of glacier in alaska united states of america denali national park and preserve glacier surface debris )2017-07-27v41 / 369approvedNo
459amnonhigher in surface compared to middle and bottom in aquaculture biofilter sand ( high in surface compared to middle bottom in water fresh water fish farm biofilter sand united states of america state of wisconsin )2019-01-12v41 / 448approvedNo
459amnoncommon in surface in aquaculture biofilter sand (common water, fresh water, fish farm, biofilter, sand, united states of america, state of wisconsin, surface)2019-01-12v41 / 622approvedNo

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