Summary for ontology term: sus scrofa

Number of annotations with term: 49

Annotations:

common ontology terms
term enrichment score
TermScore
sus scrofa0.932039
pig0.932039
tonsil0.438356
farm0.397790
state of michigan0.336134
jiangxi province0.179104
united kingdom0.148649
jinhua city prefecture0.140351
jinhua pig0.140351
cecal content0.140351
tibet autonomous region0.131148
caecum0.121622
age 6-10 weeks0.109091
age 12-19 weeks0.109091
age 1-3 weeks0.109091
suckling0.109091
preweaned0.109091
age 2-4 weeks0.109091
weaned0.109091
age 4-7 weeks0.109091
corn and soybean diet0.109091
jejunum0.103448
ileum0.098765
left colon0.098361
right colon0.093750
age 4 weeks0.093750
duodenum0.078947
age 8 hours0.075472
province of quebec0.072727
LOWER IN jejunum0.072727
nipple0.072727
LOWER IN left colon0.070175
gastrointestinal system0.070175
state of tennessee0.067797
LOWER IN right colon0.067797
pregnancy0.065574
vagina0.065574
zoological garden0.063492
china0.062176
LOWER IN duodenum0.061538
LOWER IN caecum0.057971
canada0.051948
adult0.042857
diet0.041237
skin0.041237
intestinal contents0.039216
LOWER IN intestinal contents0.039216
LOWER IN sucram0.039216
standard feed0.039216
sucram0.039216
LOWER IN standard feed0.039216
LOWER IN age 12-19 weeks0.039216
LOWER IN age 6-10 weeks0.039216
LOWER IN age 1-3 weeks0.039216
farm 10.039216
LOWER IN farm 20.039216
farm 20.039216
LOWER IN farm 10.039216
LOWER IN tibetan pig0.039216
LOWER IN tibetan swine0.039216
tibetan pig0.039216
tibetan swine0.039216
LOWER IN sus scrofa0.039216
LOWER IN pig0.039216
LOWER IN weaned0.039216
LOWER IN corn and soybean diet0.039216
LOWER IN age 4-7 weeks0.039216
LOWER IN preweaned0.039216
LOWER IN suckling0.039216
LOWER IN age 2-4 weeks0.039216
LOWER IN mucosa0.038462
LOWER IN age 4 weeks0.038462
mucosa0.037736
feces0.037209
LOWER IN ileum0.035088
female0.034783
united states of america0.031139
Fraction of dbbact annotations with this term covered by the query
TermScore
sus scrofa0.888889
pig0.888889
tonsil0.666667
intestinal contents0.500000
LOWER IN intestinal contents0.500000
LOWER IN sucram0.500000
standard feed0.500000
sucram0.500000
LOWER IN standard feed0.500000
age 6-10 weeks0.500000
LOWER IN age 12-19 weeks0.500000
age 12-19 weeks0.500000
LOWER IN age 6-10 weeks0.500000
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
jinhua city prefecture0.500000
jinhua pig0.500000
farm 10.500000
LOWER IN farm 20.500000
farm 20.500000
LOWER IN farm 10.500000
cecal content0.500000
LOWER IN tibetan pig0.500000
LOWER IN tibetan swine0.500000
tibetan pig0.500000
tibetan swine0.500000
LOWER IN sus scrofa0.500000
LOWER IN pig0.500000
suckling0.500000
preweaned0.500000
age 2-4 weeks0.500000
LOWER IN weaned0.500000
LOWER IN corn and soybean diet0.500000
LOWER IN age 4-7 weeks0.500000
LOWER IN preweaned0.500000
LOWER IN suckling0.500000
LOWER IN age 2-4 weeks0.500000
weaned0.500000
age 4-7 weeks0.500000
corn and soybean diet0.500000
province of quebec0.333333
LOWER IN mucosa0.333333
LOWER IN jejunum0.333333
jejunum0.333333
nipple0.333333
LOWER IN age 4 weeks0.333333
tibet autonomous region0.333333
jiangxi province0.333333
state of michigan0.285714
farm0.272727
mucosa0.250000
LOWER IN left colon0.250000
left colon0.250000
gastrointestinal system0.250000
state of tennessee0.200000
LOWER IN right colon0.200000
right colon0.200000
age 4 weeks0.200000
pregnancy0.166667
vagina0.166667
zoological garden0.142857
ileum0.125000
LOWER IN duodenum0.125000
LOWER IN ileum0.125000
united kingdom0.111111
duodenum0.111111
LOWER IN caecum0.100000
caecum0.090909
canada0.071429
diet0.041667
skin0.041667
china0.034884
female0.030303
adult0.025974
feces0.019900
united states of america0.016129
Fraction of annotations for the query sequences containing the term
TermScore
sus scrofa0.979592
pig0.979592
farm0.734694
united states of america0.448980
state of michigan0.408163
tonsil0.326531
feces0.285714
china0.285714
united kingdom0.224490
caecum0.183673
adult0.122449
jiangxi province0.122449
ileum0.081633
jinhua city prefecture0.081633
jinhua pig0.081633
cecal content0.081633
tibet autonomous region0.081633
right colon0.061224
left colon0.061224
duodenum0.061224
jejunum0.061224
age 6-10 weeks0.061224
age 12-19 weeks0.061224
age 1-3 weeks0.061224
age 4 weeks0.061224
suckling0.061224
preweaned0.061224
age 2-4 weeks0.061224
weaned0.061224
age 4-7 weeks0.061224
corn and soybean diet0.061224
canada0.040816
province of quebec0.040816
female0.040816
pregnancy0.040816
zoological garden0.040816
state of tennessee0.040816
LOWER IN duodenum0.040816
LOWER IN jejunum0.040816
LOWER IN caecum0.040816
LOWER IN right colon0.040816
LOWER IN left colon0.040816
diet0.040816
gastrointestinal system0.040816
vagina0.040816
skin0.040816
nipple0.040816
age 8 hours0.040816
LOWER IN mucosa0.020408
intestinal contents0.020408
mucosa0.020408
LOWER IN intestinal contents0.020408
LOWER IN ileum0.020408
LOWER IN sucram0.020408
standard feed0.020408
sucram0.020408
LOWER IN standard feed0.020408
LOWER IN age 12-19 weeks0.020408
LOWER IN age 6-10 weeks0.020408
LOWER IN age 4 weeks0.020408
LOWER IN age 1-3 weeks0.020408
farm 10.020408
LOWER IN farm 20.020408
farm 20.020408
LOWER IN farm 10.020408
LOWER IN tibetan pig0.020408
LOWER IN tibetan swine0.020408
tibetan pig0.020408
tibetan swine0.020408
LOWER IN sus scrofa0.020408
LOWER IN pig0.020408
LOWER IN weaned0.020408
LOWER IN corn and soybean diet0.020408
LOWER IN age 4-7 weeks0.020408
LOWER IN preweaned0.020408
LOWER IN suckling0.020408
LOWER IN age 2-4 weeks0.020408
Exp. ID User ID Description Date Region Flag Sequences
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 1
521amnonhigh freq. in weaned pigs (highfreq pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 9
256amnonhighfreq sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 10
388amnonhighfreq pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 11
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 11
424amnonhighfreq sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 12
399amnonhighfreq feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 13
389amnonhighfreq pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 13
388amnonhighfreq pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 14
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 14
470amnonhighfreq sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 15
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 17
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 17
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 17
256amnonhighfreq sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 19
521amnonhigh freq. in pre-weaned pigs (highfreq pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 20
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 22
314amnonhighfreq caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 23
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 41
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 43
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 50
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 71
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 72
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 80
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 103
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 109
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 112
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 114
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 2 compared to farm 1 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 136
314amnon high in sus scrofa pig compared to tibetan pig tibetan swine in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 136
314amnon high in tibetan pig tibetan swine compared to sus scrofa pig in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 157
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 168
521amnoncommon in pre-weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 169
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 1 compared to farm 2 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 171
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 189
388amnon high in age 6-10 weeks compared to age 12-19 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 210
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v4No1 / 227
388amnon high in age 12-19 weeks compared to age 6-10 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 231
521amnonhigh freq. in weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 288
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 319
521amnonhigher in pre-weaned pigs compared to weaned older timepoints ( high in suckling preweaned age 2-4 weeks compared to weaned corn and soybean diet age 4-7 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 347
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 380
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 387
314amnoncommon caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 402
424amnoncommon sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 452
470amnoncommon sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 457
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 490
521amnonlower in pre-weaned pigs compared to weaned older timepoints ( high in weaned age 4-7 weeks corn and soybean diet compared to preweaned suckling age 2-4 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 681
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v4No1 / 740

Problems / suggestions? Please email info AT dbbact DOT org