Summary for ontology term: sus scrofa

Number of annotations with term: 79

Annotations:

common ontology terms
term enrichment score
TermScore
pig0.942149
sus scrofa0.942149
caecum0.324786
canada0.310680
farm0.277992
tonsil0.268908
province of alberta0.261682
state of michigan0.251572
male organism0.228137
male0.204778
age 6 weeks0.187919
ascending colon0.185567
ileum0.135338
salmonellosis0.131868
salmonella enterica subsp. enterica serovar typhimurium0.131868
jiangxi province0.116505
belgium0.111888
united kingdom0.110000
colon0.106383
age 2 months0.104348
LOWER IN caecum0.094862
age 140 days0.091954
duroc pig0.091954
jinhua city prefecture0.091954
jinhua pig0.091954
tibet autonomous region0.087912
nanchang city prefecture0.087912
cecal content0.080808
age 6-10 weeks0.070588
age 12-19 weeks0.070588
age 1-3 weeks0.070588
suckling0.070588
preweaned0.070588
age 2-4 weeks0.070588
weaned0.070588
age 4-7 weeks0.070588
corn and soybean diet0.070588
left colon0.065934
jejunum0.065934
right colon0.063830
age 4 weeks0.063830
italy0.055944
china0.055728
duodenum0.055046
LOWER IN salmonellosis0.048193
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.048193
tylosin phosphate0.048193
LOWER IN tylosin phosphate0.048193
age 8 hours0.048193
wild boar0.048193
sus scrofa domesticus0.048193
feces0.047291
province of quebec0.047059
nipple0.047059
age 1 month0.045977
LOWER IN jejunum0.045977
LOWER IN left colon0.045977
state of tennessee0.044944
LOWER IN right colon0.044944
research facility0.044080
LOWER IN ileum0.043956
gastrointestinal system0.043011
vagina0.042105
LOWER IN duodenum0.041237
pregnancy0.039604
zoological garden0.038095
LOWER IN antibiotic0.038095
antibiotic0.037383
female0.036474
diet0.031496
skin0.028777
united states of america0.025448
LOWER IN ascending colon0.024691
LOWER IN tibetan pig0.024691
LOWER IN tibetan swine0.024691
tibetan pig0.024691
tibetan swine0.024691
LOWER IN sus scrofa0.024691
LOWER IN pig0.024691
intestinal contents0.024691
LOWER IN intestinal contents0.024691
LOWER IN sucram0.024691
sucram0.024691
LOWER IN age 12-19 weeks0.024691
LOWER IN age 6-10 weeks0.024691
LOWER IN age 1-3 weeks0.024691
farm 10.024691
LOWER IN farm 20.024691
farm 20.024691
LOWER IN farm 10.024691
LOWER IN weaned0.024691
LOWER IN corn and soybean diet0.024691
LOWER IN age 4-7 weeks0.024691
LOWER IN preweaned0.024691
LOWER IN suckling0.024691
LOWER IN age 2-4 weeks0.024691
LOWER IN colon0.024390
LOWER IN male0.024390
LOWER IN mucosa0.024390
standard feed0.024390
Fraction of dbbact annotations with this term covered by the query
TermScore
pig0.923077
sus scrofa0.923077
LOWER IN caecum0.750000
canada0.666667
LOWER IN salmonellosis0.500000
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
ascending colon0.500000
caecum0.500000
province of alberta0.500000
salmonellosis0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
LOWER IN ascending colon0.500000
tylosin phosphate0.500000
LOWER IN tylosin phosphate0.500000
LOWER IN tibetan pig0.500000
LOWER IN tibetan swine0.500000
tibetan pig0.500000
tibetan swine0.500000
LOWER IN sus scrofa0.500000
LOWER IN pig0.500000
age 140 days0.500000
duroc pig0.500000
intestinal contents0.500000
LOWER IN intestinal contents0.500000
LOWER IN sucram0.500000
sucram0.500000
age 6-10 weeks0.500000
LOWER IN age 12-19 weeks0.500000
age 12-19 weeks0.500000
LOWER IN age 6-10 weeks0.500000
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
jinhua city prefecture0.500000
jinhua pig0.500000
wild boar0.500000
sus scrofa domesticus0.500000
farm 10.500000
LOWER IN farm 20.500000
farm 20.500000
LOWER IN farm 10.500000
suckling0.500000
preweaned0.500000
age 2-4 weeks0.500000
LOWER IN weaned0.500000
LOWER IN corn and soybean diet0.500000
LOWER IN age 4-7 weeks0.500000
LOWER IN preweaned0.500000
LOWER IN suckling0.500000
LOWER IN age 2-4 weeks0.500000
weaned0.500000
age 4-7 weeks0.500000
corn and soybean diet0.500000
tonsil0.400000
province of quebec0.333333
LOWER IN colon0.333333
colon0.333333
tibet autonomous region0.333333
nanchang city prefecture0.333333
LOWER IN male0.333333
LOWER IN mucosa0.333333
standard feed0.333333
LOWER IN standard feed0.333333
nipple0.333333
LOWER IN age 4 weeks0.333333
male organism0.285714
age 1 month0.250000
LOWER IN female organism0.250000
LOWER IN male organism0.250000
mucosa0.250000
LOWER IN jejunum0.250000
LOWER IN left colon0.250000
left colon0.250000
jejunum0.250000
state of michigan0.250000
jiangxi province0.250000
male0.222222
age 6 weeks0.200000
farm0.200000
state of tennessee0.200000
cecal content0.200000
LOWER IN right colon0.200000
right colon0.200000
age 4 weeks0.200000
ileum0.166667
LOWER IN ileum0.166667
age 2 months0.166667
female organism0.166667
gastrointestinal system0.142857
belgium0.125000
vagina0.125000
LOWER IN duodenum0.111111
duodenum0.100000
pregnancy0.090909
united kingdom0.090909
zoological garden0.076923
LOWER IN antibiotic0.076923
antibiotic0.071429
italy0.062500
LOWER IN female0.045455
Fraction of annotations for the query sequences containing the term
TermScore
pig0.962025
sus scrofa0.962025
farm0.455696
research facility0.329114
feces0.303797
united states of america0.278481
state of michigan0.253165
caecum0.240506
china0.227848
canada0.202532
tonsil0.202532
male0.189873
male organism0.189873
age 6 weeks0.177215
province of alberta0.177215
control0.151899
united kingdom0.139241
ascending colon0.113924
ileum0.113924
belgium0.101266
salmonellosis0.075949
salmonella enterica subsp. enterica serovar typhimurium0.075949
adult0.075949
age 2 months0.075949
jiangxi province0.075949
colon0.063291
LOWER IN control0.050633
LOWER IN caecum0.050633
cecal content0.050633
tibet autonomous region0.050633
nanchang city prefecture0.050633
age 140 days0.050633
duroc pig0.050633
jinhua city prefecture0.050633
jinhua pig0.050633
italy0.050633
female0.037975
right colon0.037975
left colon0.037975
duodenum0.037975
jejunum0.037975
age 6-10 weeks0.037975
age 12-19 weeks0.037975
age 1-3 weeks0.037975
age 4 weeks0.037975
suckling0.037975
preweaned0.037975
age 2-4 weeks0.037975
weaned0.037975
age 4-7 weeks0.037975
corn and soybean diet0.037975
LOWER IN salmonellosis0.025316
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.025316
LOWER IN ileum0.025316
province of quebec0.025316
pregnancy0.025316
zoological garden0.025316
state of tennessee0.025316
age 1 month0.025316
tylosin phosphate0.025316
antibiotic0.025316
LOWER IN tylosin phosphate0.025316
LOWER IN antibiotic0.025316
LOWER IN duodenum0.025316
LOWER IN jejunum0.025316
LOWER IN right colon0.025316
LOWER IN left colon0.025316
diet0.025316
gastrointestinal system0.025316
vagina0.025316
skin0.025316
nipple0.025316
age 8 hours0.025316
wild boar0.025316
sus scrofa domesticus0.025316
LOWER IN ascending colon0.012658
LOWER IN colon0.012658
LOWER IN tibetan pig0.012658
LOWER IN tibetan swine0.012658
tibetan pig0.012658
tibetan swine0.012658
LOWER IN sus scrofa0.012658
LOWER IN pig0.012658
LOWER IN female0.012658
LOWER IN female organism0.012658
LOWER IN male organism0.012658
LOWER IN male0.012658
female organism0.012658
LOWER IN mucosa0.012658
intestinal contents0.012658
mucosa0.012658
LOWER IN intestinal contents0.012658
LOWER IN sucram0.012658
standard feed0.012658
sucram0.012658
LOWER IN standard feed0.012658
LOWER IN age 12-19 weeks0.012658
LOWER IN age 6-10 weeks0.012658
LOWER IN age 4 weeks0.012658
LOWER IN age 1-3 weeks0.012658
Exp. ID User ID Description Date Region Flag Sequences
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / -7
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / -1
521amnonhigh freq. in weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 1
256amnondominant sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 2
700amnon high in caecum compared to colon in control age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 3
700amnon high in tylosin phosphate antibiotic compared to control in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 3
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 3
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 3
424amnondominant sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 4
399amnondominant feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 5
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 5
673amnondominant salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 6
388amnondominant pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 6
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 6
673amnondominant control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 7
470amnondominant sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 7
673amnoncommon salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 8
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 9
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 9
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 9
666amnondominant pig, sus scrofa domesticus, italy, feces2020-09-25v3No1 / 9
673amnondominant ascending colon, caecum, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 10
688amnondominant nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v4No1 / 10
700amnondominant belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v3No1 / 11
256amnondominant sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 11
666amnondominant wild boar, sus scrofa, italy, feces2020-09-25v3No1 / 11
521amnonhigh freq. in pre-weaned pigs (dominant pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 12
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 14
673amnondominant control, ascending colon, caecum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 15
314amnondominant caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 15
673amnoncommon control, ileum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 18
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 18
700amnon high in control compared to antibiotic tylosin phosphate in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 18
673amnon high in salmonellosis salmonella enterica subsp. enterica serovar typhimurium compared to control in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 22
673amnon high in ileum compared to ascending colon caecum in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 24
688amnon high in male organism male compared to female female organism in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v4No1 / 32
700amnon high in control compared to tylosin phosphate antibiotic in colon age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 33
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 33
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 35
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 42
700amnon high in colon compared to caecum in control age 2 months belgium research facility sus scrofa pig 2028-04-01v3No1 / 52
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 63
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 64
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 72
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 81
673amnoncommon ascending colon, caecum, salmonellosis, salmonella enterica subsp. enterica serovar typhimurium, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 92
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 95
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in ascending colon caecum research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 97
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 101
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 6-10 weeks2018-11-03v4No1 / 104
388amnoncommon pig, sus scrofa, tonsil, farm, united states of america, state of michigan, age 12-19 weeks2018-11-03v4No1 / 106
314amnon high in sus scrofa pig compared to tibetan pig tibetan swine in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 128
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 2 compared to farm 1 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 128
673amnoncommon control, ascending colon, caecum, research facility, age 6 weeks, male, male organism, province of alberta, canada, pig, sus scrofa2020-09-28v4No1 / 147
314amnon high in tibetan pig tibetan swine compared to sus scrofa pig in caecum cecal content tibet autonomous region farm china 2018-04-10v4No1 / 149
700amnoncommon belgium, age 1 month, research facility, sus scrofa, pig, feces2028-04-01v3No1 / 157
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 160
521amnoncommon in pre-weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, preweaned, age 2-4 weeks, suckling, china)2019-07-02v3No1 / 161
424amnonfarm dependent in feces of pigs with same genetic background ( high in farm 1 compared to farm 2 in sus scrofa pig jinhua city prefecture jinhua pig feces farm china )2018-12-06v4No1 / 163
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 181
388amnon high in age 6-10 weeks compared to age 12-19 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 202
666amnoncommon pig, sus scrofa domesticus, italy, feces2020-09-25v3No1 / 216
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v4No1 / 219
673amnon high in ascending colon caecum compared to ileum in control research facility age 6 weeks male male organism province of alberta canada pig sus scrofa 2020-09-28v4No1 / 221
388amnon high in age 12-19 weeks compared to age 6-10 weeks in pig sus scrofa tonsil farm united states of america state of michigan 2018-11-03v4No1 / 223
688amnon high in female female organism compared to male organism male in nanchang city prefecture feces age 140 days research facility duroc pig china pig sus scrofa 2028-03-09v4No1 / 232
688amnoncommon nanchang city prefecture, feces, age 140 days, research facility, duroc pig, china, pig, sus scrofa2028-03-09v4No1 / 271
521amnonhigh freq. in weaned pigs (common pig, sus scrofa, feces, farm, jiangxi province, weaned, age 4-7 weeks, corn and soybean diet, china)2019-07-02v3No1 / 280
666amnoncommon wild boar, sus scrofa, italy, feces2020-09-25v3No1 / 298
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 311
521amnonhigher in pre-weaned pigs compared to weaned older timepoints ( high in suckling preweaned age 2-4 weeks compared to weaned corn and soybean diet age 4-7 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 339
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 372
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 379
314amnoncommon caecum, cecal content, tibet autonomous region, farm, sus scrofa, pig, china2018-04-10v4No1 / 394
424amnoncommon sus scrofa, pig, jinhua city prefecture, jinhua pig, feces, farm, china2018-12-06v4No1 / 444
470amnoncommon sus scrofa, pig, canada, farm, province of quebec, feces, female, adult, pregnancy2019-01-14v4No1 / 449
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 482
521amnonlower in pre-weaned pigs compared to weaned older timepoints ( high in weaned age 4-7 weeks corn and soybean diet compared to preweaned suckling age 2-4 weeks in pig sus scrofa feces farm jiangxi province china )2019-07-02v3No1 / 673
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v4No1 / 732

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