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Summary for ontology term: thailand
Number of annotations with term: 28
Positive-associated sequences
Negative-associated sequences
common sequences
Top positive-associated sequence
Taxonomy
Sequence
Recall
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae
TACGGAGGGTGCGAGCGTTAATCGGAATAACTGGGCGTAAAGGGCACGCAGGCGGCTATTTAAGTGAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTCAGACTGGGTAGCTAGAGTACTTTAGGGAGGGGTAGAATTCCACG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae
TACGTAGGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGACTGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTAGTTCTTGAGTGGTGGAGAGGCAAATGGAATTCCTAG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCAAGCAAGTCAGAAGTGAAAGGCTGGGGCTCAACCCCGGGACTGCTTTTGAAACTGTTTGACTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAG
0.037037
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Veillonellaceae;g__Veillonella
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATCAGTCAGTCTGTCTTAAAAGTTCGGGGCTTAACCCCGTGATGGGATGGAAACTGCTGATCTAGAGTATCGGAGAGGAAAGTGGAATTCCTAGT
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae
TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGTGTAGGTGGCCATGCAAGTCAGAAGTGAAAATCCGGGGCTCAACCCCGGAACTGCTTTTGAAACTGTGAGGCTAGAGTGCAGGAGGGGTGAGTGGAATTCCTAG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales
TACGTAGGATGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGGACTGCAAGTTGGATGTGAAATACCGTGGCTTAACCACGGAACTGCATCCAAAACTGTAGTTCTTGAGTGAAGTAGAGGCAAGCGGAATTCCGAG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae
TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAAGCAAGTTGGAAGTGAAATGCATGGGCTCAACCCATGAGCTGCTTTCAAAACTGTTTTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae
AACGTAGGGTGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGCAGGCGGACCGGCAAGTTGGAAGTGAAATCCATGGGCTCAACCCGTGAATTGCTTTCAAAACTGCTGGCCTTGAGTAGTGCAGAGGTAGGTGGAATTCCCGG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGAATGGCAAGTCTGATGTGAAAGGCCGGGGCTCAACCCCGGGACTGCATTGGAAACTGCCAATCTAGAGTACCGGAGGGGTAAGTGGAATTCCTAG
0.037037
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCAGAAGTGAAAGGCTGGGGCTCAACCCCGGGACTGCTTTTGAAACTGTTTGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAG
0.037037
Top negative-associated sequence
Taxonomy
Sequence
Recall
d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Veillonellaceae;g__Dialister
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGCTTCCCAAGTCCCTCTTAAAAGTGCGGGGCTTAACCCCGTGATGGGAAGGAAACTGGGAAGCTGGAGTATCGGAGAGGAAAGTGGAATTCCTAGT
0.333333
d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus
TACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTGATAAGTCTGAAGTTAAAGGCTGTGGCTCAACCATAGTTCGCTTTGGAAACTGTCAAACTTGAGTGCAGAAGGGGAGAGTGGAATTCCATGT
0.333333
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae
TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGATAGGCAAGTCTGGAGTGAAAACCCAGGGCTCAACCCTGGGACTGCTTTGGAAACTGCAGATCTGGAGTGCCGGAGAGGTAAGCGGAATTCCTAG
0.333333
d__Bacteria;p__Firmicutes
TACGTAGGTGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGTGCGTAGGTGGCGTACTAAGTCTGTAGTAAAAGGCAATGGCTCAACCATTGTAAGCTATGGAAACTGGTAGGCTAGAGTGCAGAAGAGGGCGATGGAATTCCATGT
0.333333
d__Bacteria
TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGCGAGATAAGTCTGAGGTAAAAGCCCGTGGCTCAACCACGGTAAGCCTTGGAAACTGTCTGGCTGGAGTGCAGGAGAGGACAATGGAATTCCATGT
0.333333
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae
TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGATAGGCAAGTCTGGAGTGAAAACCCAGGGCTCAACCTTGGGACTGCTTTGGAAACTGCAGATCTGGAGTGCCGGAGAGGTAAGCGGAATTCCTAG
0.333333
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCTGTTTTTTAAGTTAGAGGTGAAAGCTCGACGCTCAACGTCGAAATTGCCTCTGATACTGAGAGACTAGAGTGTAGTTGCGGAAGGCGGAATGTGTGG
0.333333
d__Bacteria;p__"Verrucomicrobia";c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Akkermansia
TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCGGTTTCGTAAGTCGTGTGTGAAAGGCGGGGGCTCAACCCCCGGACTGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGG
0.333333
d__Bacteria;p__Firmicutes;c__Clostridia
TACGTAGGGAGCGAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGGCTGTCAAGTCAGATGTGAAATACCGGGGCTCAACTCCGGGGCTGCATTTGAAACTGATGGTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAG
0.333333
d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales
TACGTAGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGAGTGCGTAGGTGGTAACTTAAGCGCGGGGTTTAAGGCAATGGCTTAACCATTGTTCGCCCTGCGAACTGGGATACTTGAGTGCAGGAGAGGAAAGCGGAATTCCTAGT
0.333333
Top COMMON/DOMINANT/HIGH sequence
Taxonomy
Sequence
F-Score
d__Bacteria;p__"Proteobacteria";c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia
TACGGAGGGGGCAAGCGTTGTTCGGAATTATTGGGCGTAAAGGGCACGTAGGTGGACTAGTAAGTTAAAAGTGAAATACCAAAGCTTAACTTTGGAGCGGCTTTTAATACTGCTAGACTAGAGGTCGAAAGAGGATAGCGGAATTCCTAG
0.193548
d__Bacteria
TACATAGGTCGCAAGCATTATTCGGATTTATTGGGCGTAAAGCAAGCGCAGGCGGATGTGTAAGTTCTGTGTTAAATGCAGCTACTCAATAGTTGTATGCACCGAATACTACATGTCTAGATTGTGGTAGGGAGTTTCGGAATTAAGCAT
0.193548
d__Bacteria;p__"Bacteroidetes";c__Flavobacteriia;o__"Flavobacteriales";f__Flavobacteriaceae;g__Spongiimonas
TGAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATCCCGCGTGTAGGAAGACGGCCTTATGGGTTGTAAACTACTTTTATACAGGAAGAAACGTACCCTCGTGAGGGTGCCTGACGGTACTGTAGGAATAAGCACCGGCTAACT
0.193548
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__Alteromonadales;f__Pseudoalteromonadaceae;g__Pseudoalteromonas
TGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTCAGTAAGGAGGAAAGGTTAGTAGTTAATACCTGCTAGCTGTGACGTTACTTACAGAAGAAGCACCGGC
0.193548
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales"
TGAGGAATATTGGTCAATGGGCGATAGCCTGAACCAGCCAAGTCGCGTGAGGGAAGACTGCCCTATGGGTTGTAAACCTCTTTTGTAAGTGGAGAATAAGCGTTACGTGTAGCGCGATGACTGTAACTTACGAATAAGCATCGGCTAACT
0.193548
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Vibrionales";f__Vibrionaceae;g__Vibrio
TGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTCAGTTGTGAGGAAGGTGGTGTCGTTAATAGCGGCATCATTTGACGTTAGCAACAGAAGAAGCACCGGC
0.187500
d__Bacteria;p__"Proteobacteria";c__Gammaproteobacteria;o__"Vibrionales";f__Vibrionaceae
TGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCAGTGAGGAAGGCGGAGTCGTTAATAGCGGCCTCGTTTGACGTTAGCTGCAGAAGAAGCACCGGC
0.181818
d__Bacteria
TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGAGAGTAGGCGGTTTAGAAAGTGTAAAGTAAAAGGCTAGTGCTCAACGCTGGTATGCTTTACAAACTAATAGACTAGAGTACAGGAGAGGTTAACGGAATTCCATGT
0.166667
d__Bacteria;p__"Bacteroidetes";c__"Bacteroidia";o__"Bacteroidales";f__"Porphyromonadaceae";g__Parabacteroides
TGAGGAATATTGGTCAATGGCCGAGAGGCTGAACCAGCCAAGTCGCGTGAAGGATGAAGGATCTATGGTTTGTAAACTTCTTTTATAGGGGAATAAAGTGTGGGACGTGTTCCATTTTGTATGTACCCTATGAATAAGCATCGGCTAACT
0.162162
d__Bacteria
TACGTAGGTGGCAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGTGCGTAGGTGGCTATTCAAGTTAGCGGTGAAATCCCGGGGCTCAACTCCGGTGCTACCACTAATACTGTTTAGCTTGAGTACGGGAGAGGTAACTGGAATTCCTAG
0.153846
Annotations:
Annotations
F-Scores
Recall
Precision
term enrichment score
Term
Score
thailand
0.962963
blood
0.300000
bangkok
0.300000
semi domestic dog
0.300000
penaeus monodon
0.222222
black tiger shrimp
0.222222
rural community
0.180180
hmong
0.176471
myanmar
0.176471
karen
0.176471
broiler chicken
0.142857
saen thong subdistrict
0.133333
elephas maximus
0.117647
asian elephant
0.117647
village
0.117647
LOWER IN thailand
0.117647
pathogen
0.089552
chicken
0.086957
human late adulthood stage
0.083333
gallus gallus
0.083333
dog
0.072289
ehrlichiosis
0.066667
ehrlichia canis
0.066667
mycoplasma haemocanis
0.066667
anaplasmosis
0.066667
anaplasma platys
0.066667
increased weight
0.066667
top weight group
0.066667
LOWER IN decreased weight
0.066667
LOWER IN bottom weight group
0.066667
decreased weight
0.066667
bottom weight group
0.066667
LOWER IN increased weight
0.066667
LOWER IN top weight group
0.066667
LOWER IN myanmar
0.066667
LOWER IN karen
0.066667
LOWER IN hmong
0.066667
canis lupus familiaris
0.065217
viet nam
0.064516
LOWER IN viet nam
0.064516
intestine
0.062500
captive
0.062500
low bmi
0.054054
LOWER IN low bmi
0.054054
LOWER IN rural community
0.051282
LOWER IN high bmi
0.048780
high bmi
0.048780
farm
0.046512
female
0.028571
feces
0.024983
adult
0.022222
homo sapiens
0.014510
china
0.011029
LOWER IN china
0.010000
LOWER IN united states of america
0.007273
united states of america
0.007273
Fraction of dbbact annotations with this term covered by the query
Term
Score
thailand
1.000000
saen thong subdistrict
1.000000
blood
0.500000
ehrlichiosis
0.500000
bangkok
0.500000
semi domestic dog
0.500000
ehrlichia canis
0.500000
mycoplasma haemocanis
0.500000
anaplasmosis
0.500000
anaplasma platys
0.500000
increased weight
0.500000
top weight group
0.500000
LOWER IN decreased weight
0.500000
LOWER IN bottom weight group
0.500000
penaeus monodon
0.500000
black tiger shrimp
0.500000
decreased weight
0.500000
bottom weight group
0.500000
LOWER IN increased weight
0.500000
LOWER IN top weight group
0.500000
hmong
0.500000
LOWER IN myanmar
0.500000
LOWER IN karen
0.500000
myanmar
0.500000
karen
0.500000
LOWER IN hmong
0.500000
elephas maximus
0.333333
asian elephant
0.333333
village
0.333333
viet nam
0.333333
LOWER IN thailand
0.333333
LOWER IN viet nam
0.333333
rural community
0.181818
broiler chicken
0.142857
low bmi
0.111111
LOWER IN low bmi
0.111111
human late adulthood stage
0.100000
LOWER IN rural community
0.090909
pathogen
0.076923
LOWER IN high bmi
0.076923
high bmi
0.076923
chicken
0.062500
gallus gallus
0.058824
captive
0.055556
dog
0.043478
intestine
0.040000
canis lupus familiaris
0.038462
farm
0.027778
female
0.015873
feces
0.012739
adult
0.011561
homo sapiens
0.007380
china
0.005814
LOWER IN china
0.005814
LOWER IN united states of america
0.004049
united states of america
0.004049
Fraction of annotations for the query sequences containing the term
Term
Score
thailand
0.928571
feces
0.642857
homo sapiens
0.428571
adult
0.285714
canis lupus familiaris
0.214286
dog
0.214286
blood
0.214286
bangkok
0.214286
semi domestic dog
0.214286
rural community
0.178571
farm
0.142857
intestine
0.142857
penaeus monodon
0.142857
black tiger shrimp
0.142857
gallus gallus
0.142857
chicken
0.142857
broiler chicken
0.142857
female
0.142857
pathogen
0.107143
hmong
0.107143
china
0.107143
myanmar
0.107143
karen
0.107143
captive
0.071429
elephas maximus
0.071429
asian elephant
0.071429
village
0.071429
saen thong subdistrict
0.071429
human late adulthood stage
0.071429
LOWER IN thailand
0.071429
ehrlichiosis
0.035714
ehrlichia canis
0.035714
mycoplasma haemocanis
0.035714
anaplasmosis
0.035714
anaplasma platys
0.035714
contamination
0.035714
increased weight
0.035714
top weight group
0.035714
LOWER IN decreased weight
0.035714
LOWER IN bottom weight group
0.035714
decreased weight
0.035714
bottom weight group
0.035714
LOWER IN increased weight
0.035714
LOWER IN top weight group
0.035714
viet nam
0.035714
LOWER IN viet nam
0.035714
low bmi
0.035714
LOWER IN high bmi
0.035714
high bmi
0.035714
LOWER IN low bmi
0.035714
LOWER IN united states of america
0.035714
united states of america
0.035714
LOWER IN rural community
0.035714
LOWER IN myanmar
0.035714
LOWER IN karen
0.035714
LOWER IN hmong
0.035714
LOWER IN china
0.035714
Exp. ID
User ID
Description
Date
Region
Flag
Sequences
664
amnon
causitive bacteria for ehrlichiosis (other pathogen, canis lupus familiaris, thailand, dog, blood, ehrlichiosis, bangkok, semi domestic dog, ehrlichia canis)
2020-09-22
v4
No
1 / 1
664
amnon
dog blood mycoplasma (other pathogen, canis lupus familiaris, thailand, dog, blood, bangkok, semi domestic dog, mycoplasma haemocanis)
2020-09-22
v4
No
1 / 1
664
amnon
anaplasmosis causing pathogen (other pathogen, canis lupus familiaris, thailand, dog, blood, anaplasmosis, bangkok, semi domestic dog, anaplasma platys)
2020-09-22
v4
No
1 / 1
664
amnon
candidate contaminant in low biomass blood samples (contamination)
2020-09-23
v4
No
1 / 2
664
amnon
dominant canis lupus familiaris, thailand, dog, blood, bangkok, semi domestic dog
2020-09-22
v4
No
1 / 6
400
amnon
positively correlated with bmi ( high in high bmi compared to low bmi in feces homo sapiens adult thailand )
2018-11-18
v4
No
1 / 6
778
amnon
high in increased weight top weight group compared to decreased weight bottom weight group in farm intestine thailand penaeus monodon black tiger shrimp
2021-04-28
v3
No
1 / 9
664
amnon
common canis lupus familiaris, thailand, dog, blood, bangkok, semi domestic dog
2020-09-22
v4
No
1 / 11
633
amnon
dominant feces, thailand, captive, elephas maximus, asian elephant
2020-06-16
v4
No
1 / 11
400
amnon
high freq. in hmong (chinese) females from thailand (dominant feces, homo sapiens, female, adult, thailand, hmong, china)
2018-11-18
v4
No
1 / 13
400
amnon
high freq. in karen (burma) females from thailand (dominant feces, homo sapiens, female, adult, myanmar, thailand, karen)
2018-11-18
v4
No
1 / 14
778
amnon
dominant farm, intestine, thailand, penaeus monodon, black tiger shrimp
2021-04-28
v3
No
1 / 15
875
amnon
dominant feces, homo sapiens, adult, thailand, rural community, village, saen thong subdistrict, human late adulthood stage
2022-03-04
v3
No
1 / 18
568
amnon
dominant feces, gallus gallus, thailand, chicken, broiler chicken
2019-12-08
v3
No
1 / 23
778
amnon
common farm, intestine, thailand, penaeus monodon, black tiger shrimp
2021-04-28
v3
No
1 / 25
778
amnon
high in decreased weight bottom weight group compared to increased weight top weight group in farm intestine thailand penaeus monodon black tiger shrimp
2021-04-28
v3
No
1 / 40
875
amnon
common feces, homo sapiens, adult, thailand, rural community, village, saen thong subdistrict, human late adulthood stage
2022-03-04
v3
No
1 / 65
400
amnon
negatively correlated with bmi ( high in low bmi compared to high bmi in feces homo sapiens adult thailand )
2018-11-18
v4
No
1 / 70
400
amnon
common in hmong (chinese) females from thailand (common feces, homo sapiens, female, adult, thailand, hmong, china)
2018-11-18
v4
No
1 / 95
568
amnon
high in viet nam compared to thailand in feces gallus gallus chicken broiler chicken
2019-12-08
v3
No
1 / 119
400
amnon
common in karen (burma) females from thailand (common feces, homo sapiens, female, adult, myanmar, thailand, karen)
2018-11-18
v4
No
1 / 132
400
amnon
higher in hmong ethnic group (from china) compared to karen ethnic group (from burma) ( high in hmong china compared to myanmar karen in feces homo sapiens thailand rural community )
2018-11-18
v4
No
1 / 135
568
amnon
high in thailand compared to viet nam in feces gallus gallus chicken broiler chicken
2019-12-08
v3
No
1 / 206
568
amnon
common feces, gallus gallus, thailand, chicken, broiler chicken
2019-12-08
v3
No
1 / 320
400
amnon
lower in hmong ethnic group (from china) compared to karen ethnic group (from burma) ( high in myanmar karen compared to hmong china in feces homo sapiens thailand rural community )
2018-11-18
v4
No
1 / 329
400
amnon
lower in people from thailand compared to 2nd generation immigrants to usa ( high in united states of america compared to thailand rural community in feces homo sapiens )
2018-11-18
v4
No
1 / 343
400
amnon
higher in people from thailand compared to 2nd generation immigrants to usa ( high in thailand rural community compared to united states of america in feces homo sapiens )
2018-11-18
v4
No
1 / 378
633
amnon
common feces, thailand, captive, elephas maximus, asian elephant
2020-06-16
v4
No
1 / 591
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