×
Search result for sequence:
TACGTAGGCAGCAAGCGTTGTTCGGAGTTACTGGGCGTAAAGGGTGTGTAGGCGGTTGCTTAAGTTTGGTGTGAAATCTCCCGGCTCAACTGGGAGGGTGCGCCGAATACTGAGTGACTCGAGTGCGGGAGAGGAAAGTGGAATTCCTGG
Annotations
F-Scores
Recall
Precision
term enrichment score
Term
Score
minas gerais state
0.352941
campos rupestres
0.352941
soil
0.205957
paddy field soil
0.193548
rhizosphere
0.159453
arachis hypogaea
0.153846
peanut
0.153846
vellozia epidendroides
0.153846
barbacenia macrantha
0.153846
topsoil
0.129032
forest ecosystem
0.129032
ph 5
0.125000
woodland area
0.121212
depth (soil) 0-10cm
0.114286
zhejiang province
0.103448
brazil
0.088235
temperate grassland biome
0.083333
central park
0.083333
kakadu national park
0.083333
LOWER IN uranium
0.083333
LOWER IN high uranium
0.083333
LOWER IN non-manured
0.083333
north china plain
0.083333
ph>4, ph<5
0.083333
savanna
0.083333
subtropical broadleaf forest biome
0.083333
LOWER IN mediterranean
0.083333
LOWER IN copper
0.083333
ph 3.5
0.083333
sphagnum bog
0.080000
depth 20cm
0.080000
park
0.080000
ph 5.6
0.080000
LOWER IN soybean
0.080000
soybean
0.080000
subtropical
0.080000
LOWER IN semi-arid
0.080000
peat soil
0.076923
urban biome
0.076923
ph<5
0.076923
LOWER IN ph>5
0.076923
rice
0.076923
depth (soil) 0-20cm
0.076923
LOWER IN root structure
0.076923
orchard
0.076923
root endosphere
0.076923
root
0.076923
fertilized soil
0.074074
wheat
0.074074
citrus
0.074074
peatland
0.071429
manured soil
0.071429
wetland area
0.068966
new york city
0.068966
oryza sativa
0.068966
LOWER IN glycine max
0.068966
glycine max
0.068966
cultivated environment
0.066667
rock
0.066667
guangdong province
0.064516
agricultural feature
0.055556
LOWER IN root
0.054054
china
0.051020
winter
0.048780
australia
0.040816
sediment
0.035714
plant
0.030303
LOWER IN rhizosphere
0.028986
ph
0.026316
control
0.018868
research facility
0.011561
united states of america
0.007117
Fraction of dbbact annotations with this term covered by the query
Term
Score
temperate grassland biome
0.500000
central park
0.500000
kakadu national park
0.500000
LOWER IN uranium
0.500000
LOWER IN high uranium
0.500000
arachis hypogaea
0.500000
peanut
0.500000
LOWER IN non-manured
0.500000
north china plain
0.500000
ph>4, ph<5
0.500000
savanna
0.500000
subtropical broadleaf forest biome
0.500000
LOWER IN mediterranean
0.500000
LOWER IN copper
0.500000
minas gerais state
0.500000
campos rupestres
0.500000
ph 3.5
0.500000
vellozia epidendroides
0.500000
barbacenia macrantha
0.500000
sphagnum bog
0.333333
depth 20cm
0.333333
park
0.333333
ph 5.6
0.333333
LOWER IN soybean
0.333333
soybean
0.333333
subtropical
0.333333
LOWER IN semi-arid
0.333333
paddy field soil
0.333333
peat soil
0.250000
urban biome
0.250000
ph<5
0.250000
LOWER IN ph>5
0.250000
rice
0.250000
LOWER IN root structure
0.250000
orchard
0.250000
root endosphere
0.250000
topsoil
0.222222
forest ecosystem
0.222222
ph 5
0.200000
fertilized soil
0.200000
wheat
0.200000
citrus
0.200000
woodland area
0.181818
peatland
0.166667
manured soil
0.166667
depth (soil) 0-10cm
0.153846
wetland area
0.142857
new york city
0.142857
oryza sativa
0.142857
LOWER IN glycine max
0.142857
glycine max
0.142857
cultivated environment
0.125000
rock
0.125000
soil
0.118812
guangdong province
0.111111
rhizosphere
0.106383
zhejiang province
0.083333
agricultural feature
0.071429
LOWER IN root
0.066667
root
0.066667
winter
0.052632
brazil
0.052632
depth (soil) 0-20cm
0.048780
australia
0.037037
sediment
0.029412
china
0.027027
plant
0.022727
LOWER IN rhizosphere
0.021277
ph
0.018519
control
0.010526
research facility
0.006173
united states of america
0.003861
Fraction of annotations for the query sequences containing the term
Term
Score
soil
0.772727
china
0.454545
rhizosphere
0.318182
minas gerais state
0.272727
campos rupestres
0.272727
brazil
0.272727
depth (soil) 0-20cm
0.181818
zhejiang province
0.136364
paddy field soil
0.136364
control
0.090909
ph 5
0.090909
arachis hypogaea
0.090909
peanut
0.090909
topsoil
0.090909
depth (soil) 0-10cm
0.090909
forest ecosystem
0.090909
woodland area
0.090909
research facility
0.090909
vellozia epidendroides
0.090909
root
0.090909
barbacenia macrantha
0.090909
peatland
0.045455
peat soil
0.045455
sphagnum bog
0.045455
temperate grassland biome
0.045455
depth 20cm
0.045455
wetland area
0.045455
urban biome
0.045455
park
0.045455
new york city
0.045455
central park
0.045455
ph
0.045455
ph<5
0.045455
LOWER IN ph>5
0.045455
oryza sativa
0.045455
rice
0.045455
united states of america
0.045455
ph 5.6
0.045455
australia
0.045455
kakadu national park
0.045455
sediment
0.045455
LOWER IN uranium
0.045455
LOWER IN high uranium
0.045455
manured soil
0.045455
fertilized soil
0.045455
LOWER IN non-manured
0.045455
LOWER IN rhizosphere
0.045455
LOWER IN glycine max
0.045455
LOWER IN soybean
0.045455
LOWER IN root structure
0.045455
glycine max
0.045455
soybean
0.045455
LOWER IN root
0.045455
north china plain
0.045455
agricultural feature
0.045455
wheat
0.045455
winter
0.045455
ph>4, ph<5
0.045455
savanna
0.045455
guangdong province
0.045455
subtropical broadleaf forest biome
0.045455
citrus
0.045455
orchard
0.045455
subtropical
0.045455
LOWER IN mediterranean
0.045455
LOWER IN semi-arid
0.045455
cultivated environment
0.045455
LOWER IN copper
0.045455
ph 3.5
0.045455
plant
0.045455
rock
0.045455
root endosphere
0.045455
Exp. ID
User ID
Description
Date
Region
Flag
Sequences
421
amnon
lower in paddy field soil incubated with copper compared to controls ( high in control compared to copper in soil research facility zhejiang province paddy field soil china )
2018-12-02
v4
No
1 / 212
415
amnon
higher in citrus from humid subtropical compared to mediterranean and semi-arid climate ( high in subtropical compared to mediterranean semi-arid in rhizosphere soil citrus orchard cultivated environment )
2018-11-27
v4
No
1 / 458
259
amnon
higher in manured soil compared to non-manured ( high in manured soil compared to non-manured in soil rhizosphere ph 5 arachis hypogaea peanut fertilized soil china )
2017-12-02
v4
No
1 / 497
548
amnon
common minas gerais state, campos rupestres, brazil, barbacenia macrantha, root endosphere, root
2019-08-17
v4
No
1 / 575
84
amnon
common soil, peatland, peat soil, sphagnum bog, temperate grassland biome, depth 20cm, wetland area
2017-03-06
v4
No
1 / 590
357
amnon
common soil, topsoil, depth (soil) 0-10cm, savanna, forest ecosystem, woodland area
2018-08-19
v4
No
1 / 614
548
amnon
common minas gerais state, campos rupestres, brazil, barbacenia macrantha, rhizosphere
2019-08-17
v4
No
1 / 651
548
amnon
common in endopytic roots of Vellozia epidendroides (common minas gerais state, campos rupestres, brazil, vellozia epidendroides, plant, root)
2019-08-15
v4
No
1 / 800
421
amnon
common in paddy field soil incubated without copper (common research facility, soil, paddy field soil, zhejiang province, china)
2018-12-02
v4
No
1 / 824
548
amnon
common minas gerais state, campos rupestres, brazil, rock
2019-08-17
v4
No
1 / 924
359
amnon
common soil, topsoil, depth (soil) 0-10cm, guangdong province, subtropical broadleaf forest biome, china, forest ecosystem, woodland area
2018-08-19
v4
No
1 / 935
548
amnon
common minas gerais state, campos rupestres, brazil, rhizosphere, vellozia epidendroides
2019-08-15
v4
No
1 / 1040
421
amnon
common soil, paddy field soil, zhejiang province, china
2018-12-04
v4
No
1 / 1194
259
amnon
common in soil and rhizpsphere of peanut plants (common soil, rhizosphere, ph 5, arachis hypogaea, peanut, china)
2017-12-02
v4
No
1 / 1334
100
amnon
high in ph ph<5 compared to ph>5 in soil urban biome park new york city central park
2017-04-03
v4
No
1 / 1451
548
amnon
common in phosphorus impoverished soil (common soil, minas gerais state, campos rupestres, brazil, ph 3.5)
2019-08-15
v4
No
1 / 1483
145
amnon
common soil, rhizosphere, oryza sativa, rice, united states of america, ph 5.6
2017-04-19
v4
No
1 / 1515
154
amnon
high in control compared to uranium high uranium in soil australia kakadu national park sediment
2017-06-29
v4
No
1 / 1663
296
amnon
common depth (soil) 0-20cm, soil, north china plain, agricultural feature, wheat, winter, ph>4, ph<5, china
2018-02-11
v4
No
1 / 1886
271
amnon
common depth (soil) 0-20cm, soil, china
2018-01-09
v4
No
1 / 2856
271
amnon
high in soil compared to rhizosphere glycine max soybean in depth (soil) 0-20cm china
2018-01-09
v4
No
1 / 4853
271
amnon
high in soil rhizosphere compared to root structure root in depth (soil) 0-20cm glycine max soybean china
2018-01-09
v4
No
1 / 7954
Problems / suggestions? Please email info AT dbbact DOT org