dbBact sequence annotation

term enrichment score

Term	Score
mesocosm	0.400000
central park	0.250000
bank vole	0.250000
myodes glareolus	0.250000
ukraine	0.250000
no human contact	0.250000
chernobyl exclusion zone	0.250000
minas gerais state	0.250000
campos rupestres	0.250000
barbacenia macrantha	0.250000
cherokia georgiana georgiana	0.250000
millipede	0.250000
park	0.222222
ph<6	0.222222
LOWER IN ph>6	0.222222
LOWER IN amerindian	0.222222
LOWER IN venezuela	0.222222
LOWER IN human contact	0.222222
urban biome	0.200000
root endosphere	0.200000
state of georgia	0.181818
LOWER IN hunter gatherer	0.181818
new york city	0.153846
skin	0.100000
root	0.095238
brazil	0.080000
city	0.071429
soil	0.037383
ph	0.033333
united states of america	0.015209
homo sapiens	0.006780
feces	0.005698

Fraction of dbbact annotations with this term covered by the query

Term	Score
central park	0.500000
bank vole	0.500000
myodes glareolus	0.500000
ukraine	0.500000
no human contact	0.500000
chernobyl exclusion zone	0.500000
minas gerais state	0.500000
campos rupestres	0.500000
barbacenia macrantha	0.500000
cherokia georgiana georgiana	0.500000
millipede	0.500000
mesocosm	0.500000
park	0.333333
ph<6	0.333333
LOWER IN ph>6	0.333333
LOWER IN amerindian	0.333333
LOWER IN venezuela	0.333333
LOWER IN human contact	0.333333
urban biome	0.250000
root endosphere	0.250000
LOWER IN hunter gatherer	0.200000
new york city	0.142857
state of georgia	0.125000
root	0.066667
skin	0.058824
brazil	0.052632
city	0.045455
soil	0.019802
ph	0.018519
united states of america	0.007722
homo sapiens	0.003460
feces	0.002899

Fraction of annotations for the query sequences containing the term

Term	Score
united states of america	0.500000
soil	0.333333
skin	0.333333
mesocosm	0.333333
state of georgia	0.333333
urban biome	0.166667
park	0.166667
new york city	0.166667
central park	0.166667
ph	0.166667
ph<6	0.166667
LOWER IN ph>6	0.166667
homo sapiens	0.166667
city	0.166667
LOWER IN amerindian	0.166667
LOWER IN hunter gatherer	0.166667
LOWER IN venezuela	0.166667
bank vole	0.166667
myodes glareolus	0.166667
ukraine	0.166667
no human contact	0.166667
chernobyl exclusion zone	0.166667
LOWER IN human contact	0.166667
minas gerais state	0.166667
campos rupestres	0.166667
brazil	0.166667
barbacenia macrantha	0.166667
root endosphere	0.166667
root	0.166667
cherokia georgiana georgiana	0.166667
millipede	0.166667
feces	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
371	amnon	lower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )	2018-09-06	v4	No	1 / 195
548	amnon	common minas gerais state, campos rupestres, brazil, barbacenia macrantha, root endosphere, root	2019-08-17	v4	No	1 / 575
788	amnon	common cherokia georgiana georgiana, millipede, feces, mesocosm, state of georgia, united states of america	2021-05-31	v4	No	1 / 607
788	amnon	common soil, mesocosm, state of georgia, united states of america	2021-05-31	v4	No	1 / 897
423	amnon	high in no human contact chernobyl exclusion zone compared to human contact in bank vole myodes glareolus ukraine skin	2018-12-05	v4	No	1 / 1229
100	amnon	high in ph ph<6 compared to ph>6 in soil urban biome park new york city central park	2017-04-03	v4	No	1 / 5770

Taxonomy: d__Bacteria;p__"Actinobacteria";c__Actinobacteria;o__Actinomycetales